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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0001600 |
| Transcript ID | LotjaGi4g1v0001600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein NRT1/ PTR FAMILY 1.2; TAIR: AT1G59740.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q93VV5|PTR16_ARATH Protein NRT1/ PTR FAMILY 4.3; TrEMBL-Plants: tr|A0A0S3RA52|A0A0S3RA52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0001600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:339205..341836) extracted from Lotus japonicus Gifu genome v1.2.
ACCCCATCCGCCGTTGAAACTCTTGATTGGAGAGGCAGACCCTCTCATCCTTACAAACATGGTGGAATAAGACCTGCTGC CTTTCTTCTTGGTATCATTCTTTCTATTCTATGTGTCTGTCTATGACGTGTTCTTCTAATTAATTACACTTATACTCTGT CTCTTCCTCTGTCTCTTTATTCTTAATTTGCTTCACTGCACTACACTGCAGGGTTGCAAGCATTTGAAATAATGGCAATA GCTGCGGTTGGAAACAACCTCATAACTTACGTCTTCAATGAGATGCACTTCTCTCTGTCCCAATCTGCCAACGTTGTCAC CAACTTTGTTGGCACTATCTTTCTCCTTGCCCTCCTTGGTGGCTATCTCTCTGACTCTTTTCTTGGGAGCTTCTGGACCA TCCTTATCTTTGGTTTTGTTGAACTCTCTGTAAGCTACTACTTACTTACTTCTGTTTATTTATTAATTAATGACATTTAA TTTGAATTGATTGTAATAATAATTAATTTAACTGCAGGGTTTCATATTACTCTCAGTCCAAGCTCATCTCCCTCAGTTGA AGCCACCACCGTGCAATATGCTAATTACTGATGATGGAGGAGAACACTGCACAGAAGCAAAAGGTTTCAAGGCCATGATA TTCTTTTTGGCAATATACTTGGTGGCATTGGGGAGTGGCTGTGTCAAGCCCAACATGATTGCTCACGGAGGAGACCAGTT CAATCAGGAAGACCCCAAGCAGCTAAACCAGCTCTCAACTTACTTCAACGCTGCTTACTTTGCATTCTCTTTGGGAGAAC TTGTTGCCCTCACTATTCTTGTTTGGATTCAAACTCATTCTGGAATGGACGTGGGCTTCGGGATCTCAGCAGCTGTCATG GCAATGGGACTGATAAGCTTGATTTCTGGAACCTTTTATTACAGGAACAAGCCCCCACAAGGCAGCATCTTAACCCCTAT TGCTCAAGTACGTACCATTCTTCAACTATCTGTCTATTAATTTCCTACCCTCTCAAGATAAAACTCTATTGTATACATTC TTTAGTGGAACAACACATTGCTAGCTCGGTTCAATTATCCATTTCTAGTTATCTAGAAAAATTCGTACTTTTATAAGTGT CTGTTTAGAATCCTTAGATACTAGCTAGTTGTGTGATATGTGAACTTACTTCCATCTCAACCTTTCTTAAGGGTTCTATT CAGTTTTCCTTTTGCATTGAAATAAGACTTATCTGCTAAATAGGGTTGTGTAAATGAGGTGGATCACATCAACATTTGTG ATTTTGTGATAATCATCAAAACATGTATCATTGTTTATTCTTGGGTTGCACAATAATATTGTTAATTTGTGTTTGCTGAG ACATGTAAGTATCAACTTTAATTTTGTGTGTCTTATGGATATATGCATGCTGGTTTGTATTCCTATTACTCTTACACTAA TTCAATCAAGTTGCCATGATCTCATACCAGGTTCTTGTGGCTGCATTTTTTAAAAGAAAGCATATTTATCCATCTAACCC CCAAATGCTTCATGGAGATCAAAACAATGTCGGTCAGGTTCATACTGATAAGTTTAGGTACTTATATACTATGTTATTTT TACTGCTTGTCTTTTCAAACACCTAGATCAAAAGAAACAGCTGTCTGTTGATAAACTTCATGATCTAGAATAGTCTATAT AGATTAATTAAATTTCTGCCAACATATACATATCTAAAAAAGCTGATGATGAAACTCTATGTTCAGGTTCTTGGACAAAG CTTGTATCAGAGTTGAAGAGGCTGGGAGTAACACAAAGGAAAGCTCATGGAGGTTGTGCAGTGTTGGGCAAGTTGAGCAA GTGAAGATATTGCTATCAGTTATTCCCATTTTTTCTTGCACCATAGTTTTCAACACAATCTTAGCACAACTCCAAACATT CTCAGTACAACAAGGGAGTGCCATGGACACCCATCTCACAAAGTCCTTTCACATTCCTCCTGCGTCGCTACAATCCATTC CTTACATTTTGCTCATCATTGTAGTCCCTCTCTACGACACCTTCTTCGTACCATTTGCCAGAAGAATAACAGGCCATGAA TCTGGAATCTCGCCTTTAAGACGAATAGGCTTTGGCCTTTTTCTGGCTACCTTTTCCATGGTTTCTGCAGCTCTATTGGA GAAGAAGAGAAGGGATGAAGCCTTGAACCATAACAAAACATTGTCCATTTTTTGGATCACCCCACAATTCTTGATCTTTG GGTTGTCAGAGATGTTTACAGCTGTTGGCCTCATTGAGTTCTTCTACAAACAGTCCATGAAAGGGATGCAGGCATTCTTG ACAGCCATCACATATTGCTCCTACTCATTTGGGTTTTATTTGAGTTCAATTTTGGTTTCATTGGTGAATAAGATCACTTC AAATGGTTCTTCAAATGGTGGTTGGCTCCACCACAACAATCTCAACCAAGATAGGCTTGATCTTTTCTATTGGTTAATGG CAGTCTTAAGCTTCCTCAACTTTCTCAGCTATCTATTCTGGTCCAATTGGTATTCTCACGGTTCCACCAAATCCCAAGCT GAATCTAACACCAAGGAAAACAATCCATGCGGCCAGGGCTCTAAATACTTTGAAGATCACAATGTTCCATAG
CDS sequence (LotjaGi4g1v0001600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATAGCTGCGGTTGGAAACAACCTCATAACTTACGTCTTCAATGAGATGCACTTCTCTCTGTCCCAATCTGCCAA CGTTGTCACCAACTTTGTTGGCACTATCTTTCTCCTTGCCCTCCTTGGTGGCTATCTCTCTGACTCTTTTCTTGGGAGCT TCTGGACCATCCTTATCTTTGGTTTTGTTGAACTCTCTGGTTTCATATTACTCTCAGTCCAAGCTCATCTCCCTCAGTTG AAGCCACCACCGTGCAATATGCTAATTACTGATGATGGAGGAGAACACTGCACAGAAGCAAAAGGTTTCAAGGCCATGAT ATTCTTTTTGGCAATATACTTGGTGGCATTGGGGAGTGGCTGTGTCAAGCCCAACATGATTGCTCACGGAGGAGACCAGT TCAATCAGGAAGACCCCAAGCAGCTAAACCAGCTCTCAACTTACTTCAACGCTGCTTACTTTGCATTCTCTTTGGGAGAA CTTGTTGCCCTCACTATTCTTGTTTGGATTCAAACTCATTCTGGAATGGACGTGGGCTTCGGGATCTCAGCAGCTGTCAT GGCAATGGGACTGATAAGCTTGATTTCTGGAACCTTTTATTACAGGAACAAGCCCCCACAAGGCAGCATCTTAACCCCTA TTGCTCAAGTTCTTGTGGCTGCATTTTTTAAAAGAAAGCATATTTATCCATCTAACCCCCAAATGTTGTGCAGTGTTGGG CAAGTTGAGCAAGTGAAGATATTGCTATCAGTTATTCCCATTTTTTCTTGCACCATAGTTTTCAACACAATCTTAGCACA ACTCCAAACATTCTCAGTACAACAAGGGAGTGCCATGGACACCCATCTCACAAAGTCCTTTCACATTCCTCCTGCGTCGC TACAATCCATTCCTTACATTTTGCTCATCATTGTAGTCCCTCTCTACGACACCTTCTTCGTACCATTTGCCAGAAGAATA ACAGGCCATGAATCTGGAATCTCGCCTTTAAGACGAATAGGCTTTGGCCTTTTTCTGGCTACCTTTTCCATGGTTTCTGC AGCTCTATTGGAGAAGAAGAGAAGGGATGAAGCCTTGAACCATAACAAAACATTGTCCATTTTTTGGATCACCCCACAAT TCTTGATCTTTGGGTTGTCAGAGATGTTTACAGCTGTTGGCCTCATTGAGTTCTTCTACAAACAGTCCATGAAAGGGATG CAGGCATTCTTGACAGCCATCACATATTGCTCCTACTCATTTGGGTTTTATTTGAGTTCAATTTTGGTTTCATTGGTGAA TAAGATCACTTCAAATGGTTCTTCAAATGGTGGTTGGCTCCACCACAACAATCTCAACCAAGATAGGCTTGATCTTTTCT ATTGGTTAATGGCAGTCTTAAGCTTCCTCAACTTTCTCAGCTATCTATTCTGGTCCAATTGGTATTCTCACGGTTCCACC AAATCCCAAGCTGAATCTAACACCAAGGAAAACAATCCATGCGGCCAGGGCTCTAAATACTTTGAAGATCACAATGTTCC ATAG
Protein sequence (LotjaGi4g1v0001600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIAAVGNNLITYVFNEMHFSLSQSANVVTNFVGTIFLLALLGGYLSDSFLGSFWTILIFGFVELSGFILLSVQAHLPQL KPPPCNMLITDDGGEHCTEAKGFKAMIFFLAIYLVALGSGCVKPNMIAHGGDQFNQEDPKQLNQLSTYFNAAYFAFSLGE LVALTILVWIQTHSGMDVGFGISAAVMAMGLISLISGTFYYRNKPPQGSILTPIAQVLVAAFFKRKHIYPSNPQMLCSVG QVEQVKILLSVIPIFSCTIVFNTILAQLQTFSVQQGSAMDTHLTKSFHIPPASLQSIPYILLIIVVPLYDTFFVPFARRI TGHESGISPLRRIGFGLFLATFSMVSAALLEKKRRDEALNHNKTLSIFWITPQFLIFGLSEMFTAVGLIEFFYKQSMKGM QAFLTAITYCSYSFGFYLSSILVSLVNKITSNGSSNGGWLHHNNLNQDRLDLFYWLMAVLSFLNFLSYLFWSNWYSHGST KSQAESNTKENNPCGQGSKYFEDHNVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 235 | 235 | 1.1E-257 | – | |
| Gene3D | 1 | 485 | 485 | 2.8E-163 | – | |
| CDD | 1 | 474 | 474 | 0.0 | – | |
| PANTHER | 1 | 235 | 235 | 1.1E-257 | ||
| SUPERFAMILY | 8 | 475 | 468 | 3.49E-20 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| ProSitePatterns | 43 | 67 | 25 | - | ||
| Phobius | 47 | 51 | 5 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 52 | 73 | 22 | - | – | |
| Pfam | 54 | 435 | 382 | 1.1E-86 | ||
| Phobius | 74 | 106 | 33 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 107 | 128 | 22 | - | – | |
| Phobius | 129 | 147 | 19 | - | – | |
| Phobius | 148 | 170 | 23 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 171 | 181 | 11 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 182 | 201 | 20 | - | – | |
| Phobius | 202 | 206 | 5 | - | – | |
| Phobius | 207 | 224 | 18 | - | – | |
| Phobius | 225 | 244 | 20 | - | – | |
| PANTHER | 232 | 493 | 262 | 1.1E-257 | ||
| PANTHER | 232 | 493 | 262 | 1.1E-257 | – | |
| Phobius | 245 | 265 | 21 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 266 | 296 | 31 | - | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 297 | 317 | 21 | - | – | |
| Phobius | 318 | 328 | 11 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| Phobius | 329 | 350 | 22 | - | – | |
| Phobius | 351 | 369 | 19 | - | – | |
| TMHMM | 370 | 392 | 23 | - | – | |
| Phobius | 370 | 393 | 24 | - | – | |
| Phobius | 394 | 401 | 8 | - | – | |
| Phobius | 402 | 426 | 25 | - | – | |
| TMHMM | 404 | 426 | 23 | - | – | |
| Phobius | 427 | 451 | 25 | - | – | |
| TMHMM | 452 | 474 | 23 | - | – | |
| Phobius | 452 | 471 | 20 | - | – | |
| Phobius | 472 | 507 | 36 | - | – | |
| MobiDBLite | 482 | 507 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0001600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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