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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0006700 |
| Transcript ID | LotjaGi4g1v0006700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Potassium channel; TAIR: AT5G55630.1 Outward rectifying potassium channel protein; Swiss-Prot: sp|Q8LBL1|KCO1_ARATH Two-pore potassium channel 1; TrEMBL-Plants: tr|I1MQY9|I1MQY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0006700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:991937..995639) extracted from Lotus japonicus Gifu genome v1.2.
CTGGTTAATTTATCCAAATCTGAAGATGTGTGTGTCATCATCAATTACTTTTCTGATCAAGTAGGAACAACATTCTCATC AGGTGGCTGTAGTTTATCTACTATGCTCTTATTCCTGTGGTAGTTACACTATTTGTTTATTTGTCTTAAAAACTTGAATG ATTCTCTCACCGAAGTTCATAGGACCCCAGAAAGATTATTTAGCATCTGCATGCCATATCTAATTATGTAACATTAGAGG GGAAAAGAGAAACTGACGTTAGTGTTTTCTTGGACTTAATTAATAAGAGGGACAGTACAACATTGGTAGAAACAAAACAA ATAACCTTAGTGTGTTTTTTCAGTTAGTCCAACTGAATGCATTGGTTAGCCTCTGTTCAGACTTTATATTCATGCATTTC CACCTTTGATTTTCTTCATATTAATCTGTTAACAACACGTTAACTTCTATAATGAACGCCAGCTGTTTGTGAATTTGATC TACTAATTTTAATACAATACAATTCATTGAATTTCTTTTGTTCTATGGAACAACATTCAGGAACAAAAAATTGTCAGGTA ATTGGAGGGGAATTAAGAAAACTGGTTTGCAGGAAAAACTTTTAATACATAATAATGTTGTCATTGGAAGAGTTCCTACT TCCTACTACTACTACTTGTTTCATAAATCGATTCAAGGAAGCTTCCTATTAGCCTTCAAACTTGAGATAGGAACATGACT GGAGCAAATAGCATGTTTGAATTAGCTTATTTTGACTTATATTCAATTCTCACACTCAAAAGCTACTGAACAGGCTTCTT CGTAGAATTAATTTTGGTTTTAGAATAAATTAGAGAAAAATTTCCAAACATGCACCAAGTCTCTCACAATTTCATCCTTT CAGGTGTCCTGCTATTACATATGAAGCTTTTTCAGTAAGTTGATGGGCAGTAGTGATGATGAAGCTGAAAAATCATTACT TTCAGAATCAAGAGATCATCCTCATCTTCATGTCCAGAGAAGACGACCCCGGCGAGGTAGTGTTTCAGAGACAGAGATCA ATCTCCTAGAACAAAATGTAGTCCAAAACCCTTCACACTCTCGTACAGCTGCAGAACCACAAGCAGAATTTGATTTCAAG CCAGTGTTTTTGTGGTTAGCTACCTATCTTGGTGCAGGTACCTAGTGAGGGAACTAGGAATATGTAAAATGCGGAAAAAA CATTCCTTAATAGAATAGTATTCAAATATTTTATTTATCACCTTAAAGTTTTTACTGCCTTCTCCAATCAGCCATAATTG ATTTTGCATAATGTGTTAAATTTTCGCCCCGTTTTACCTATATTTTCTGGTTCGGACCTGCAGGTACCCTATGTTTCTTT CTCACTAGTTATCAGATCACAGGTATAAAAACCAATGGATTTCTTGATGCTCTTTACTTTTGTGTTGTGACAATGACCAC TGTTGGATATGGAGATCTTGTGCCGAATAGCCCATTGGCGAAACTTCTTGCCTGCATTTATGTCTTCACAGGCATGGCTC TTGTTGGGTTAATTCTAAGCAAAGCAGCTGATTACATTGTTGAGAAGCAAGAACTGATACTAGTAAGAGCTATGTGCAAA GGTGGAAAACTTAGACCAGAAGAGCTTTTCAAAGAGGTTGAAACTAACAAAAGCAAGTACAAATTTGTGCTTGCAGCAGC AATTTTTTGTGTGCTCATGATTGCAGGAACTGCTTTTCTGTATTTTGTTGAAAATCTAGATTTTGTGGATGCACTCTATT GTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCAACTACTATTGGTCGCGTTTTTGCTATGTTC TGGATATTGAGCAGCACTATTTGCTTAGCACAGTCTTTTGCCTATCTTGCTGAGCTATATACTGAAAATAGACAAAGATC ATTGGCGAAATTGGTTCTTACGCGAAAATTGTCACTCCTTGATCTTGAGACAGCGGATCTTGATCAAGACAAAGCTGTTA GGTTTGTTCCAATTTCAAACTTTGCTCTTTTAATATCCTCTCTTTTCTTGTAAGTCTGTTGCCTGCATTTTCTGTGTTTT TCCCTGCGTTATTCTGTTTTTCTAACAAGGTAGGTCAATAGAAGTGTAGAGGTGATGCTAAATGTACTAGAAAAAGATAG TTCTAAGCTCATATGGATTATTTATCTATAATTTGCATTGAGTTAAGCAATGATAGATGGATAGCATGTTTGGAAATCCT TTCTAAAGCCAAAATCAATTCTGGGAAAAAACCTTTGTGAGTAGATTTAAGATGTTAGAATTGATTCTGAGGAAACAGAA GTTGATCCGAACATGCTATTAGTTGAATCACATTATTGAATGCTCACATTCAACATTTTTGTTTTCCCCAGTGCTGCAGA GTTTGTTGTGTACAAGTTGAAGGAAATGGGAAAGATCAATCAAGAAGATATTTCAGCTGTGATGGAGATTTTTAGAAAAC TAGATTGTGATAAATCAGGAACTTTGACAGAAGCTGATCTTAGATAATCTGAATCATCTTAACCCATTACCTGCCTATAC ATAATGAATTCCATTTCACTTTTTGATCCCCTTGTCATTGGTATTACCTTATTGGAAAGTGCTCCCAGATGCAATATAAG TTCACATTTTATCAATTTTACCTTAATTATCAACCTCTATATGTTAAATTTCGGTTCTATTCAAAGCAAGCATGTGACAA AGAGACTGAGTTAAAACAGAGAAATTTTTACACTCATCATTTCTAGAAGTTTATGCTTTATTTTTTTGTTCATATTTCTG TGACATTCATTACACAAACTGGAATCATACAGTTTAATGTGAGCATGAATCTGGATAAAATGAACAAGATATCACTGATG GTTGTTTTGGACCTGAAACTTGAGCACCCTTGTTGCACTTAGAAACTTTGAGGCTCCTCAGAATGTTCTGGCACGCCTGC AGCTAAATAATCCATGAGACCTTCACCAGCTTTTTCACCATGAAACTCAGCTGTAAATTTTGAAACGCCTCCAAAGGCTA TTATTGCAACCAAGAACACAGTGGTGGAAGCAAACAATGGCCAAAAATATGCCAGAATGTTCAGAAACTGTGGGGCTGCA TATAACAGCAAGGAGAAAGATAGTGAAATTGCTATTGCTATGGAGATATGGCATCTATATTGGAGAAGCTTTTCTGGTAC ATCCATGGCCCCTTGGATAATTGGATTGATGAGTGTTATAAAAACAGAGAGAGAGAATTGAGGGGAGAGGGAGGGGGAAG AAAGGGAAAGGGAATAAGAGTATGGTTATGCCTCCACTCTACATTAAGAGTTGCTATTGGCAAATATTATAACTCTTCTG ATAAGATTCTGTGTTGGAAATGATGGTTTCAGTGATTCTCATAGCTTGCTTGGCCCAAATGCATCTTATTCTTCTAAAAG CAACATGTTTCCCAAATTGTCCTCTACTTCTCACTTGAATAGATGTAATCCCATATGGGAGTCTATCTAAAATAGGTGCA TTCTCCTGTCAGACTCCGTGACAAGCACACACAACTTTGCTCTTAGTATTAATGTTAGAGGGAAGATGTCTCTTACCTAG CGTTTTTTTGTCTTTAATATCCATAGAATTATCCTTTGGATTTATTGATCATTTAACATTAGTTATGTAATTATTGACTT GTTAAATGCTATAATGGTTCCGG
CDS sequence (LotjaGi4g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGTAGTGATGATGAAGCTGAAAAATCATTACTTTCAGAATCAAGAGATCATCCTCATCTTCATGTCCAGAGAAG ACGACCCCGGCGAGGTAGTGTTTCAGAGACAGAGATCAATCTCCTAGAACAAAATGTAGTCCAAAACCCTTCACACTCTC GTACAGCTGCAGAACCACAAGCAGAATTTGATTTCAAGCCAGTGTTTTTGTGGTTAGCTACCTATCTTGGTGCAGGTACC CTATGTTTCTTTCTCACTAGTTATCAGATCACAGGTATAAAAACCAATGGATTTCTTGATGCTCTTTACTTTTGTGTTGT GACAATGACCACTGTTGGATATGGAGATCTTGTGCCGAATAGCCCATTGGCGAAACTTCTTGCCTGCATTTATGTCTTCA CAGGCATGGCTCTTGTTGGGTTAATTCTAAGCAAAGCAGCTGATTACATTGTTGAGAAGCAAGAACTGATACTAGTAAGA GCTATGTGCAAAGGTGGAAAACTTAGACCAGAAGAGCTTTTCAAAGAGGTTGAAACTAACAAAAGCAAGTACAAATTTGT GCTTGCAGCAGCAATTTTTTGTGTGCTCATGATTGCAGGAACTGCTTTTCTGTATTTTGTTGAAAATCTAGATTTTGTGG ATGCACTCTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCAACTACTATTGGTCGCGTT TTTGCTATGTTCTGGATATTGAGCAGCACTATTTGCTTAGCACAGTCTTTTGCCTATCTTGCTGAGCTATATACTGAAAA TAGACAAAGATCATTGGCGAAATTGGTTCTTACGCGAAAATTGTCACTCCTTGATCTTGAGACAGCGGATCTTGATCAAG ACAAAGCTGTTAGTGCTGCAGAGTTTGTTGTGTACAAGTTGAAGGAAATGGGAAAGATCAATCAAGAAGATATTTCAGCT GTGATGGAGATTTTTAGAAAACTAGATTGTGATAAATCAGGAACTTTGACAGAAGCTGATCTTAGATAA
Protein sequence (LotjaGi4g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSDDEAEKSLLSESRDHPHLHVQRRRPRRGSVSETEINLLEQNVVQNPSHSRTAAEPQAEFDFKPVFLWLATYLGAGT LCFFLTSYQITGIKTNGFLDALYFCVVTMTTVGYGDLVPNSPLAKLLACIYVFTGMALVGLILSKAADYIVEKQELILVR AMCKGGKLRPEELFKEVETNKSKYKFVLAAAIFCVLMIAGTAFLYFVENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRV FAMFWILSSTICLAQSFAYLAELYTENRQRSLAKLVLTRKLSLLDLETADLDQDKAVSAAEFVVYKLKEMGKINQEDISA VMEIFRKLDCDKSGTLTEADLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 67 | 67 | - | – | |
| PANTHER | 17 | 341 | 325 | 1.9E-163 | – | |
| PANTHER | 17 | 341 | 325 | 1.9E-163 | – | |
| Gene3D | 44 | 164 | 121 | 2.8E-21 | – | |
| SUPERFAMILY | 65 | 152 | 88 | 8.24E-24 | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 68 | 86 | 19 | - | – | |
| Pfam | 72 | 151 | 80 | 1.2E-17 | ||
| Phobius | 87 | 97 | 11 | - | – | |
| TMHMM | 97 | 114 | 18 | - | – | |
| Phobius | 98 | 117 | 20 | - | – | |
| PRINTS | 107 | 135 | 29 | 5.4E-7 | ||
| Phobius | 118 | 122 | 5 | - | – | |
| Phobius | 123 | 143 | 21 | - | – | |
| TMHMM | 124 | 143 | 20 | - | – | |
| Phobius | 144 | 185 | 42 | - | – | |
| Gene3D | 169 | 273 | 105 | 1.2E-17 | – | |
| SUPERFAMILY | 177 | 280 | 104 | 3.66E-22 | – | |
| TMHMM | 185 | 207 | 23 | - | – | |
| Phobius | 186 | 207 | 22 | - | – | |
| Pfam | 192 | 265 | 74 | 7.0E-14 | ||
| Phobius | 208 | 239 | 32 | - | – | |
| PRINTS | 224 | 233 | 10 | 5.4E-7 | ||
| Phobius | 240 | 261 | 22 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 262 | 342 | 81 | - | – | |
| Gene3D | 278 | 342 | 65 | 4.7E-6 | – | |
| SUPERFAMILY | 286 | 342 | 57 | 3.71E-7 | ||
| ProSiteProfiles | 316 | 342 | 27 | 10.748 | ||
| ProSitePatterns | 329 | 341 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Potassium channel activity | Enables the facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Potassium ion transmembrane transport | A process in which a potassium ion is transported from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0006700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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