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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0008400 |
| Transcript ID | LotjaGi4g1v0008400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7JLM2|G7JLM2_MEDTR F-box and associated interaction domain protein; Found in the gene: LotjaGi4g1v0008400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1148344..1154527) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCCATATTCTGCACCGCCATCCATTTTATATACCCACTTGCCAAAATGGGTTCCCATTCATTAGTAAATGACCCTG TGATCCTCAAAACATGATCGTGATGAAAGTTAAATCATTTATGGGAAACAATTGGATCAACATTTTTGGAAGTCTATTTA TGAACACGGTTACAACAACATTTTACCTAACTTTGACGTAAAGAAAAAACATAAAAACACGTATATTAATGTGGAAAAAA CCTCAATGGTCTGTGAAAATAATATGCATTCACATAATAACATTTAGGGCTCGTTTAGCACGCCGTATTAGACATGATAG TATAAGTTTATACAATACATTATGAGTTTATCCATTGTTTGGTGATGACATTGTATTGTATAAGCTTATCCATCCAAGTC TCCTTATACATTAAAATGACGTGTAATTTAATCCATCATGTGAGTGAAGGATAAGACATGATAAGGTTGTGACGTATAAG TCACCATCACCAACACCCTCCATTGCTGCCAACTTACACCACCATTGGCACCACCACCGCCACCGGTGTTGTCGCCACCA TCCGATCACCATCGCCGTCGTCACCATCGCCCTACCGTCACCACTGGTGTTGCCGCCACCACCACCATTGCCTCCACCCT CCACCGTCGCCACCACTCTATTGTCACCACCGCCACCACTAACACCACAACCACCACCCTATCGCCACCACCACCACCAT TGCCTTCACCCTCCACCGTCGCCGCCACCATACTGCAGCCGCCACCGCCACCGTCTTACCACCACCCTATCATCGCCAAC ACCACAACCACCATCGCTGCCACCACCCGATCACCACCACTGCCGCTGCCACCACCGCCCTACCACCACTGACACCACAA CCACCACCATATCGCCACCACAACCATCACCCTATCACTACCACCACCACCATTACCTCCACCATCCACCGTAGCCGCCA CCCTACCGCAGCCGCCACCGCCACCGCCTTACCACCACCACCACCACCCTATCATCGCCACCACCACAACCACCATCGTT GCCACCACCACCACCAACCTATCTCCACTGTCACCGCCACCGCCACCAACACCAACCTACCACCATTGCCACCACCACCA CCAACCTATCACTACTTTCATCGCCACCGCCGCCACCGTTATAATCACCTCCATATTTGATTTTTATTATATATAATTGT TCAATACTTCACTAAACATAAAATTGCATTAATTTAAACGATATGGTAAATTATACAGAGTATGGCCAAACGTTGGATAG TATAAGAAAGTTATCAGGGCTTATACTATCAAACATTATACTATACGTCGCACAAAACGGGCCCTTAATATCAATTGAAA TGCAACACGCTTGGAGACAATAAAAATGGAAACATGTGAAATAAACAAACAATGTCAAAAGAAACAATTGAGATACATAA ATCCCAAAGAGTAGTTTCACATTTTCTAAGCTTTTACACAAACACACTCTTCATTATTTCTCCTTTTATTCTCTTATTCT TTTTTCCTCACCATTTACTAATCAACAAGATAAATTATTAATCTAGTCATCAATTTCAAAGAAAAAAGTAAATTATCCAT GAGATTAAGAGGTATATGAGTTCAATTAGGAATGACAATTTTCACTTGAATATGAAGATTCTGGTGACAACTGCCTAGTT TGAGACCCCGACCTTATGAAATTTTCTTTACGGGATAAAGATCATTCTTTGTGTGTTGCGAAACCTACGCCCCGTATATA TAAATTAAAATACAGTGAGAAACACTTGCAAAAAGGTTAATTAAGTAAGTTGACGTCTCTCCGGGTGTAAGGTGGGAAAG AGGATAATACCGTGAAAAATGCGGCAGGTCTGCTGCACATTGATTTCTGAAAACCCTAACAAACAAATGTAAGAAAGCTC CAACGCCACCATCGGATGCATCGACGCCACCATGGCGGACCATCTTCCGTCGGAAGTAATCACCGACATACTCTGCCGTG TTCCGGCGAACTCCCTCCTCCGCTTCCGCTCCATTTCCAAGTGGTGGCGCTCACTCATCGACAGCACCCACTTCATCTTC CTCCACCTCCACAAAACCACCTACTCCTTCCTCATCCTCCGCCAGCACTCCCATCTCTACCGCATCGACCTCGATTCCCC TAACCAAGCCGTCGAAATCGACCACCCGCTCATGTGCTACAGCAACCGCATCAAGATCCTCGGTTCCTGCAACGGCCTCC TCTGCATCTGCAACATCGCCGATGACATCGCGTTGTGGAACCCTACTCTTCGAAAGCACCGGATTCTCCCCTCTGAGCCC CTCAACCGGAACAAAACCCCGGAGGAAAACATCAACAACAACACCACCTTCTGCGCCGCCCATGTCCACGGATTCGGATA CGATTCCTTCTCCGGCGACTACAAACTGGTAAGCATTTCCTACTTTGTTGACCTTCAGCGGGGCACCTTCGATTCCAAGG TCAAGCTCTTCAGCCTCCGAATGGACTCGTGGAAGAGCCTCCCGAGCTTGCCCTACGCTCTCTGCTGCGCGAGGACCATG GGCGTTTTCGTCGGTGGCGCGTTACACTGGGTTGTGACCCGGAAACTCGAACCGGATCAGCCCGATTTGGTGGTTGCGTT TGACCTGAGATTGGAGAGTTTTAAGGAAGTGGAGCTGCCGGAGACGGTGAAGGGGAATTTCGACATGAATGTTGCGTTGT TGGGAGGGTGTCTTTCCGTGACTGAGAATCGCGGGGTGACGGAAATGGGAATGGGTGGATTTGATGTTTGGGTTTTGAAG GTGTATGGGTCTAGAGATTCATGGTGTAAACTGTTAACGGTGGCGCAACTGTGTGAGGTGAAGAATTTGAGGCCTTTGGC TTATTCTAGAAATGGGGATGGGGATAAGGTGCTGATGGAACAGGATCGTAGCAAGCTTTGTTGGTATGACCTGAAAAATG GAGATGTGAGTTGTGCTAGAATATCAGGATTGCCTAGCCTCATTGAAGGCATCGTTTGTGTGGGGAGCCTTGTCCCACCA AAGTTACTGAGTCCGACGAGTGACGATAGCCGCAGTGAGCTGCATAGATTGGGACATGGAAGTACTAGGAAGAGAAGGTA TTGATTGCCAATTACAAATTTTTGAATATTCCACCTCTCTCTCTTTCTCGCTTTCTGAGAGTGAGTTTGATGGCTTCTTC TTTATTGTACTGTTTGTGTCTTGTTTCAAGTTGACTTTGACTTGAACAAGTCTAGTTTAGTTTATATGACAATGTTTGAC ACGAATGATGAAGACTATTTATTGTTACATACACCCACTTTAGGAAGGGATGTGAGAGGACGAGATGAGAGATAAGTGAT AAGTATAATATGATGTGTGATATTGCGATAGGAATAGGGTGAAAATAGGTGCATGTAGGATATGTAGAGATTGTTTCGAG TTGACCTTGGCTTGAACAAGTCAGTTGACCTTGGCTTAATAGGTCCTGTTTGATTACGTGTTTATTGGAGCTTATCTACT AGAAAATGCACTAAATAAGCTCCAACTAGTGCTCGTTGGGTAGCATCCAAACGAGTTTAATATTGGAGAGAATGATTGAG GAAAATTCTTGTTAGACACCCACTTTGGGTGTCAACACGTATTAGAAAGTGAAAGAAAGAGAGGGTCGAGAATTAATTGA TATGATAGACCATGTCGGGTTCTATTTTTCTCGAAGGCGGTCAACGTGCCAGTCATTCCTCCCCCCTCTGACTTGTAAAT CCTTTGATATGATGTCAAAAGAAGTGATAGATAGAGAGAGAAAAATGAGATGTATGTAGGTGGAGATATGAGATTTCTAT AAAACGGGATGAAATGATTAATGATTGATTGGCAAAAGAAAGTGTAGGTTTCTCATCTTTTTCTTATGAGAAAGTGTTCT GGAGTGATAATTGCATTCTCGTTGCTGGAATGAAGGTAAGAATCTCCTAGTCGTAGCATGCAATGCATCTTATTATATCA GAAAATACTCGGTCTATTCATCGACTGGCCCTAAATTTAATTAAGAATCTCATAGCATTCATGTCATCTTATATAATAAA ACCAGTCTATTCATCGACTTACCCTAAATTTAATCTTATTCCCATCTGAATCAGTGGGCCAAATTTGGATTTTATAACAT ATTTTCTGTGATCTTGTTATGCTTACTTCATTCTTTTAACAGAGATGACTTCCTGTCCAAAGGATTCAAACTAACTTTGT AAACAAGCACAAGGAGAGAGGGCTGAAATTGGTTTATCTTGTGAACGGATGCAGTCATGAGTTATTTCTTGTGCTGAAGT TAGTACCTTTGACTCAAGGGGAGGAGTTTGAAGGATCAGTAACAAAGCCACACTCTTTATTGTCAATTTTGTGTACCCCC CCTCCCGGGGGTTCTTCCTTGATTCTGCACCTTTTGTTTTCTCAGGGTTGAAGGGGAACGAAAGATACTTGAGATCACAT GCATATATTCAAGATCAAGAAACAATGAATGAAAAACAGATACCACACTAGATAAGTCCAGCAATTGGCAGTAGGACCAC CTAGACAGACATCTGTAAGCTCAGCTCCATTAGGAAAAACAGTCTCTTGTGTTGTTGTAATAAATTGAAAATGTTGAAAC TTTTGGTTGGCCTCACCGGGTGTTTTCTTTGGTAATAGCCATCCTTGTACAAGCCACAGTGATACACATAAATCTCAGTT ACATTGTAAATTAATGTTTTTGAGTGTTTGGAAACTTGTTAGGTTTACACCATTACAGCAGCAACGATCCTGCGAGAAGC TACCGGGAGTAGCTTTTGTAAGAGGGAGAAGTGATTATGAAAGGTGTAAACATGCTATTTGTCTGTTGAAAGAAAGTAAG TTTCTTACTGAGGGGACCTTATTTATTTTTTATAGAGGAGGGGCCTTATTTTGTATGTTGGAATGCTCTACTGAATAGGT TTTGGCACTAGGTTTTTCTGCCTGGAAGAAGGCAACAATTTTTCAATTAAAGAAGAAAAGTAGGATTTTAAGTTAAGAAA TGATAGCAACACTCAGGTTGCCACTCTCTTTCGTCTCTTTTAAGCTTTATTACAAGAGTCACATTGTTTACTCATTAAAA TATCCATCACAGATTGAAGTTTTTCTCACTCTTTTCTTTTCTTTTTAACTAAGGTATTCCTAAGCATAATTGTGAAATTA ATTATGGAGCACAAGCAATAATCTTGTTTTTCCTGAAGTGGTAATTTCAAGTTCTAAACTCTTGCATTGCAGTTGTAGTT TGCTGGTGGTTTTTTTTTTTTTGTTTTCCCTGTGTTAATCTTTTGCAGTTTTCCTTTTTATTTGTCTTTTCTGTTTTTCC CATTGCCTCCATAGTGAAGACTGAAGATCAGAAATTGGTTATCTGATATGATTTTAATTTTTTAATTATGAGTACTATAA AGGAGAACTTTGTGCAATGGTTGGAGTTTCTGTAGTAGCTTAGAGAAGTCCATTTAAATTTTCAAGTCCATATGCTTTGG AAATATTTTCTAAGTTCAGCTCACAAAATCTATTCGGAAAATGTGTAATCTATTTTGAGTTCTTATCTTAAATGGAACTG TGTTAGTCTTGTACATGAAAAAATGTTGAATGTTTGCATTCATTTTTTTTTTCAGTCAACAAATGTTTGCACTCTTAAAT GTCGAAACAATTATAGTTTGAAACTCAAGGGCGATTTTATTGGTGCTCCAATCAATTGAACACAGCTCACTTCTCCTGGA GTTATTGGGAGCAGTTTAGTTAGTTTTCCATTGTTATGACTTATGGGTAGATAATGTTCATTGCAATGCACTTCACTTAC TGAATAAAACAAAACAACAACTGAACAAGACAAGAAATATATGTGTAGAAGGATCACCAGTAATAAAACAATTAATCCAA TAGAACAAAATCATCTATGCAAAAAAACTGACATAAGTACAATTACTCTGCCAATAGAAATAATAATACACATACAGCTA GCATCAGACCAGTGTCAGGGACAGGCGACACAGACTAGCATGTTTGCTTGTGGCTCAAGTCGTTATGGAAAAACATTACT CCCCTGCCTTCTGGGGAGATTTTGTTAGGGTAAAGACAACTAGCCCTATTGAGGGGAGGGGGAGACGGCCTAGCTATATG AGAATGCACCTAGTTTCATATCTA
CDS sequence (LotjaGi4g1v0008400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGACCATCTTCCGTCGGAAGTAATCACCGACATACTCTGCCGTGTTCCGGCGAACTCCCTCCTCCGCTTCCGCTC CATTTCCAAGTGGTGGCGCTCACTCATCGACAGCACCCACTTCATCTTCCTCCACCTCCACAAAACCACCTACTCCTTCC TCATCCTCCGCCAGCACTCCCATCTCTACCGCATCGACCTCGATTCCCCTAACCAAGCCGTCGAAATCGACCACCCGCTC ATGTGCTACAGCAACCGCATCAAGATCCTCGGTTCCTGCAACGGCCTCCTCTGCATCTGCAACATCGCCGATGACATCGC GTTGTGGAACCCTACTCTTCGAAAGCACCGGATTCTCCCCTCTGAGCCCCTCAACCGGAACAAAACCCCGGAGGAAAACA TCAACAACAACACCACCTTCTGCGCCGCCCATGTCCACGGATTCGGATACGATTCCTTCTCCGGCGACTACAAACTGGTA AGCATTTCCTACTTTGTTGACCTTCAGCGGGGCACCTTCGATTCCAAGGTCAAGCTCTTCAGCCTCCGAATGGACTCGTG GAAGAGCCTCCCGAGCTTGCCCTACGCTCTCTGCTGCGCGAGGACCATGGGCGTTTTCGTCGGTGGCGCGTTACACTGGG TTGTGACCCGGAAACTCGAACCGGATCAGCCCGATTTGGTGGTTGCGTTTGACCTGAGATTGGAGAGTTTTAAGGAAGTG GAGCTGCCGGAGACGGTGAAGGGGAATTTCGACATGAATGTTGCGTTGTTGGGAGGGTGTCTTTCCGTGACTGAGAATCG CGGGGTGACGGAAATGGGAATGGGTGGATTTGATGTTTGGGTTTTGAAGGTGTATGGGTCTAGAGATTCATGGTGTAAAC TGTTAACGGTGGCGCAACTGTGTGAGGTGAAGAATTTGAGGCCTTTGGCTTATTCTAGAAATGGGGATGGGGATAAGGTG CTGATGGAACAGGATCGTAGCAAGCTTTGTTGGTATGACCTGAAAAATGGAGATGTGAGTTGTGCTAGAATATCAGGATT GCCTAGCCTCATTGAAGGCATCGTTTGTGTGGGGAGCCTTGTCCCACCAAAGTTACTGAGTCCGACGAGTGACGATAGCC GCAGTGAGCTGCATAGATTGGGACATGGAAGTACTAGGAAGAGAAGAGATGACTTCCTGTCCAAAGGATTCAAACTAACT TTGTAA
Protein sequence (LotjaGi4g1v0008400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADHLPSEVITDILCRVPANSLLRFRSISKWWRSLIDSTHFIFLHLHKTTYSFLILRQHSHLYRIDLDSPNQAVEIDHPL MCYSNRIKILGSCNGLLCICNIADDIALWNPTLRKHRILPSEPLNRNKTPEENINNNTTFCAAHVHGFGYDSFSGDYKLV SISYFVDLQRGTFDSKVKLFSLRMDSWKSLPSLPYALCCARTMGVFVGGALHWVVTRKLEPDQPDLVVAFDLRLESFKEV ELPETVKGNFDMNVALLGGCLSVTENRGVTEMGMGGFDVWVLKVYGSRDSWCKLLTVAQLCEVKNLRPLAYSRNGDGDKV LMEQDRSKLCWYDLKNGDVSCARISGLPSLIEGIVCVGSLVPPKLLSPTSDDSRSELHRLGHGSTRKRRDDFLSKGFKLT L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 46 | 46 | 11.723 | ||
| Gene3D | 1 | 51 | 51 | 3.0E-6 | – | |
| SUPERFAMILY | 2 | 71 | 70 | 2.75E-11 | ||
| PANTHER | 4 | 357 | 354 | 4.7E-53 | – | |
| PANTHER | 4 | 357 | 354 | 4.7E-53 | – | |
| Pfam | 4 | 40 | 37 | 8.9E-7 | ||
| SMART | 5 | 45 | 41 | 4.9E-7 | ||
| TIGRFAM | 92 | 335 | 244 | 7.2E-27 | ||
| Pfam | 204 | 301 | 98 | 8.7E-5 | ||
| MobiDBLite | 367 | 388 | 22 | - | – | |
| MobiDBLite | 371 | 388 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0008400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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