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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0009000 |
| Transcript ID | LotjaGi4g1v0009000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alkaline ceramidase 3; TAIR: AT4G22330.1 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q9D099|ACER3_MOUSE Alkaline ceramidase 3; TrEMBL-Plants: tr|G7JKI1|G7JKI1_MEDTR Alkaline phytoceramidase; Found in the gene: LotjaGi4g1v0009000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1230472..1237150) extracted from Lotus japonicus Gifu genome v1.2.
CGAGAATCGAGATTGAGCGTAGCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTGTTATACTAC TAGTATCACATCGGTTTTGTCCCATTGCCTTACCTCTGCCGCTCCTCCGGTGCCTGCGTTCACCACCACTCGCATCGCCA TCGCCATCGCCATCGCCATCGCCATCACATTCAGGTTCGATTCACTCTTCTCTCCTCACTTCACCTTCCAATGTCAATGC AATGTTGCTTCTATTTACATTCCAAACTCCAACTTCAATTCCTTCCACTCTCTCATTCTCTCTGTTGCTTCTTTACTTTT TCTCTCTCACTATTTTTCTAACCCTAACCCTAATTGTTCTCTTCCCCTACTCTGACAATTGAATTCCCCCTTTTTCACTT GCCGATTAACAAATCTACCCCCCCTCCGAGATTCGTTGTTCGATTCACTTCACCTTGAATCCATTTTTGCCTCGAGATAA ATGGAAAATAGCACTGGTATTTCATACTTTTCATCCTATTTGCTACTTCACATTGAATCCATATCGCTCCCGTTCAATTA GGGCATGCAGAGTTCAACTTGTTCGCTATTTCATCAATTGCATTGATTCTGCTTTTTTTCCTTTTGGATTTGACATTTGA TCGCGTGCGTGTGCTTTGTTGTGTGTTAATTAAGAATTTAATACCTCTTTAGATTTCGTGCGTGTCTGCGCTTTTAATAT CAGCAAAAAGAAAATTCCAAATCTCAGTAGGTATTTTCAACTTTTTTTTTCTCTTCAGTTTTAGGGATTTGAGATTTTTT CTCTTGCTTTTAGTTTTTGTTATCAGGCAAGGATCCAAATGTAGAGTTCTGTAGGTTTCTACTGTTAATTCTGAATACGT TACGGTTCCGCTGTCATTGAATTGCATCCATGTTTGCACTTGAGCTAGTTTTTTCATTTTATGTTGACTTTATACATTTA TCATGCTTTCATTGCGATACGACATGTTCCCGTATGCGATCTATGTGTACTGCTTGCCTTAATTGCTTTGTCTCTATCCC TTAAAAAAAATTTGTGCGATTGATTTGGGTTTTCGCTTGTGCGGCTTGCAGGACTATTTTACTTCTGAAGCTCCGAAATA TAGGTAAAAAAACCTCCGAGCTGTAGAGGAGGATGGCAGAAACTTTGTCTAGCTTCTGGGGTCCAGTCACATCTACCAAA GAGTGTTGTGAAACAAATTATGCACATTCCTCTTACATTGCAGAATTCTATAACACTATATCCAATGTTCCGACAATTCT TTTGGCTCTCATTGGTCTTATAAATGCATTATGGCAACGGTTTGAGAAAAGATTCAGTGTTCTTCACCTATCAAATATGA CACTTGCCATTGGAAGCATGGTGTACCATGCCACACTGCAGCGTGTGTAAGTATTGATCTTTATCTTTAACTTCTTTTTC CATTCATTTGTGTGAATTTGTCTTTGCTTTCCTGATTGGTTTCATTTTATTTCAAATTACTTGGCGTGATAAAAATGAAG TTGGCATTTGATAGAACTGTTTGTTACATAATTGAAGAATTCAGAGTTAAGGTGTTTGCAAGAGATATATTACTGTACTC TGGACCCATATTGTCAAGGGGCATGGATTTTTATCACCATTAATCTGTCCATATGTCTACAGCTTTTCTTATTCACATGG CTCATTTGATCTTCATATAAATGAATATTTAGTGTCACTTTCTCTTACCTTACAAAGATCACATTTTTATTTATTCTTTA TCATGCAACTTAAATTTATCTATATTCTACACCCTTACAATGGGAACATAAACTCCCTAATGATGTCAATGGTGGATGGT GGAAAGCCAAAGTTTTGCCATACAGATGTGGCAGATGGTGCTGCGGCCTATGGCCGAAGCATAGAGCTATAAAATATACA CATATTATACTGCTGAATGGAATAGTAATACTAATAACGTACTTAAAAGGCAATAAATTAGAAACATAGCCTAGGAAGTA ATTTATAAGTATTGCTAACTTGAGAGATCTTGTCATAACTTAAGAGGTTCAGAGGTTAAATCTGCACAATAAGAGAACAA TTGGAAATGAAAAAGCAGAGAGAAAGTAAGTGAAATAACACAGGTACAGACTCAGGAACAGCTAACCTCTATCCAAAAAA AGTGAGACAGGGAGAGAGGAATTAATAACAAGAGAGTTGACAATAGAGAGGAAATAATTGTGGGAATAAAAGGAACAAAA AATCATAGAGAACAGTGATAAGCAAGGCACACATATCAGAGATGTTAGTTGAGAGGATCAAAGATCAAAACAGTGGTGAG GATATGCAGATGATGTTAGGACCCCATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGG GTTTATAAGGCCTTGGGCTCTCCAACTACAGCAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAATGGTATC AGAGCCTTCCACCATGTCTCTGAGCTGCAAACGAGCGGCGCGGGTGGTGACGCCGGCATTGCAGTGTTCGCTCGGGACTA GTCGTGGGGCTAGTGCACAGCCAGCCCGCGTGGGCGCCGGGGCTGCGGAGCGTGGTGGGATGTTAGGACCCCATTGCAAG GTATGGGACTTGAGTCTCACATTGGAAGTATGGGATTCTAATGTGGGGTTTATAAGGCCTTGGGCTCTCCAACTACAGCA GCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAGATGGAGAACGAAGTCCACTCTGATTTAGACATGGCTCATT CATTGGAGATGGATGGGGTGGTTCAAATAATTGATGTGGAGTTCGTTCAGTTTGCAGAGGTCATTGAATGTGATAGTGGT TGCACAGTCTAGGGATTTCATAGTTTGCTTTTGAAAATATTAAAAAATGTCTTTATAAAAGTCAAAATCGCTATTTCTGC CTTGAACTACCATGCACCGTGACACAAGCAGCTGACATTTGCCACCACATAGGACCCACCATGTCATGCTTGTCTGATGG TGGTTTGCTCCAATCCTAGCACCCCATGATGTGGTGACTATATGACAACAGTTTTTTGTTTCAGCGTTGAAGAAATATGT AAAATTTATAAATAATGTTAGGATATGAAGCCTTTATATGGACATGACATAGTGTACTGTTAGCATATCTAGAAAGCATG GATATTAGTATGACATGGTATATATAGAGATTAATACAATGTGTAAAAGTAGCATAAAGCACAAATCTTAAGTCAATAGA GAGAATCGATTTCTTAATAGTGAATATTTGTCATTGTAGAATAATAAAATGCTCTAACTTATCTAATCATTGTTCCATTT TCATCTTTAACTGTATGAAAATTCAAAAATTGTTAAATGGAGATAGGAGTCACTGAAACTGAAAATTCTATGAAGTGTTG AATATGTGTTTAGTTACTCTTTTGTTGTCTCCATGCTTCTGTGTTTGTGGCCATCCTTTTCATTTCCACCAATGGGGTCT GCTCTTGCATACTGGATTGAACTTGTGACTATAAGTAACTGATAACTATATGTTTGAGTGTTGAACCATTTCGGTACTAG TGAGCTTGTTGAAATTGCAAATTCTTCATATATATATATATATATATATATATATATATATATATATATATATATATATA TATACAGTGTTAATTCTGGTATAGTAGAATGGATAGTTTGTTTCTGGATTTAGTTAAGATAGTTAAAATTTCTTACAGAT ATAAGTCGGATTTTGAACCTCCTTATTTTTAATGTAATTTTTTTGGTAGTTATAATGTACATAGGTGTACTTGTGATAAC CAGTCATAGTTAAATTTTTGGTTGACTTCAATTTTTTTTCCGATTTTGTCCTCCATGTGCCTCAACGTTTCATCCAAAAG TCTGCTCTCAATTTTGTCTTCTTTTCCTTAAGGTTTCTTGTCCAAGAGATCCATTCTATCCGTCACTGTAGTCATGGTTG ATTGATGAGTTCATTGACCTCAGCCCTCCGGATTCTCATCTCTTTGATCCGGCTGATTGGACAAAAATGATAGAGAAATA AAATTGAATCAAACCAAATTATAGAAATTACATAGAGCTGGCCTAGAGTCCAACACTTACAACACACCCTATTTTTTTAT TATACCTAAAACATATATTCCTAACGGGCTAATACATAACTGCATAAATCCTATCATAAATTGCCCAAAACTGCTATTAA CGCCTGCAACTTCTTTTAGACACGATTACAGCATATATTCCTAATACATAACTAGTTAACTACTTATACTGTCACGTTTT ATTTGCTGCTTTATAATAGCATAAATAGGAAACTCGGTAAAATTTTCCTTCGCGTGCAGTTTAGCATTTGAATTTATTTC ATGCACTTGAGTTAGCTCTTTACAAAACTTGTATCAAGTTTGTTGTTCTTTGGGGCTAAAGGGAGATACATGAGGCTAAC GTCATACGAGTTTTAGAAATTTAGGTGACAACTTATCCACTTCAATGAATTCTGGACTAGATGTAGATGGATGTTAATTT TAGGGACTAAATGTATCTTTGCAACATCTTATAAACATTAGCGTACGCTATTTCCAATATACCCTCCCAGTTCCATTAGA CTTTTTGTGTCGGAATGATGCGAATGAACTTTAAAGATGGAACCAACAGGAAAACAAACACTCCTTAAGTTACTTATTTA TTCACCTTGAGAAAATAATTCTTTAGCTTTAATGCATGTATGATAAGAATTAATTTTCATTTATATTCTTCTTCTGTTAA ATAAGCTAAGGATTAATTTTCATTTATATTCTTCTTCTGTTAAATAAGCACGACTATGTTGCTAAGTGTGTGTCCCTTAT AAAAATGGTTTGTTTGAATATTTAGTTTGTTCATCAATAAATTCAATGTGTCTATTTTGGATGACTATTTATTGTTCAGA TGTTGTGCTTTAATTTAGGCAACAGCAAGGCGATGAAACTCCTATGGTATGGGAGGTGCTGCTGTACATATACATCCTCT ACTCTCCAGATTGGCATTACCGCAGTACAATGCCCATATTCCTCTTTCTGTATGGTGCTGGTTTTGCCATTGCCCATTCA GTGCTCAATTTTGGTATTGGCTTCAAAGTGCATTATATCATTCTATGCCTCCTCTGCGTTCCCAGGATGTACAAATACTA CATTTACACTCAAGATGTTACTGCCAAGCGGCTCGCAAAGCTATTTGTAGGCACTCTTGTCTTTGGCAGTTTGTTTGGGT TCAGTGATCGTGTTTTCTGCAAGGAGATTTCCCGTTTGCCTTTCAACCCTCAGGGTCATGCTTTGTGGCATGTTTTCATG GGTTTCAATTCCTACTTTGCAAACACATTCCTAATGTTTTGCCGTGCTCAACAGCGTGGATGGTCTCCTAAAGTTGTTTA TTTAATGGGGTTTTTACCTTACGTGAAGATTGAGAAATCAAAAAGCCAGTGACAGATATACGTGGGAAAAGAAGGAAGCT TTTTTTGTCATGATACATTTTGGCTAGATAAGCTGTTAGCAAACCTGTGTTCTCTTACTCTTTTCTCCCCTTCACTTGTG TGGTTAGATTGGCTTAAAAGTGATGATTGATTATTTACATATTTCGTCTTAGAAATAGGACCTGTAACATATTTATGCCA GTGGTACTCTTAAGCGTGGACTTTTCTTAGCTTTAAATTTGTGATGACACCCGAAAACATAATTTTGCTTACTGGTTGTT GAATTAATCCTCCTCACATTCTACATGTAATGTCTTGTGTAACCCTTTTTGGGTTTATTTTTTAGTATTACTAACAGTAT GCAGTTTGCTGTTGTTTTCTATTGGAGATTTTTCTCTTCCGAAGTCAGCGATTTTGGCATTATTTTATGTACCTGTACTC TTTATGATACACTTCTGAAAGCTAGTTGGGATTCTCATGTTTTGTGCTATTGAGGAACTTTGGCACCAATTCATTGCAAC TTTGTCTCTAGAAAGGCGCTGATGATGGTAATGTTGAATGTTGGCTTCATATTCTCCAGTTATGTGTAGCTTCTAGATAT ATCCTTCATGGAGAAAAAAACACATAAAAAGGTTGGCAATAAATTGCCTTATTTAAGTTGTGTATATGCTTATATTCGAG GTGTTAAATGTAAAAATTCGTTTCAATGTTATAATCTGTTTTTTCTCCTACATACGTACTACATCTGATAATAAAGCAAT ATACTTAGCAGTTTAGATTTGTTTATTGGTAGTGAGCTTCTAAATTATTTTTGTACGAACTCCAACATATGTTTTACTTT GTTTTTTTGGGGTTAAGCGTTATATTGGTCTCTGTCTTTGTCTCGCCGTCTGAGGTAAGTCCCTCCCCGGAAAATTTATT GCATTGAGTCCTCTTCTTTGAAATATTTTTGGGGCAGATCCTCGCCGGAGGGCGGAGCTCTGACGAGTGCTTAAATAGCA TGCTGACTAAGGTTAATGAAGTGACGTGGCATTAAATAAATAAAAAAAAAAATAAAAAAAAAAACAAATTACAAGTCAGA TTTTTAAACCTAATTATCCCCTCCCCAAATTAACCCAAAATTAACTTCATCTTCACAAAATCATCACCCAGAAATGAGCT TCATCATCACCTCCTCCTTCATCTTCATCATCAAAGGAC
CDS sequence (LotjaGi4g1v0009000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAACTTTGTCTAGCTTCTGGGGTCCAGTCACATCTACCAAAGAGTGTTGTGAAACAAATTATGCACATTCCTC TTACATTGCAGAATTCTATAACACTATATCCAATGTTCCGACAATTCTTTTGGCTCTCATTGGTCTTATAAATGCATTAT GGCAACGGTTTGAGAAAAGATTCAGTGTTCTTCACCTATCAAATATGACACTTGCCATTGGAAGCATGGTGTACCATGCC ACACTGCAGCGTGTGCAACAGCAAGGCGATGAAACTCCTATGGTATGGGAGGTGCTGCTGTACATATACATCCTCTACTC TCCAGATTGGCATTACCGCAGTACAATGCCCATATTCCTCTTTCTGTATGGTGCTGGTTTTGCCATTGCCCATTCAGTGC TCAATTTTGGTATTGGCTTCAAAGTGCATTATATCATTCTATGCCTCCTCTGCGTTCCCAGGATGTACAAATACTACATT TACACTCAAGATGTTACTGCCAAGCGGCTCGCAAAGCTATTTGTAGGCACTCTTGTCTTTGGCAGTTTGTTTGGGTTCAG TGATCGTGTTTTCTGCAAGGAGATTTCCCGTTTGCCTTTCAACCCTCAGGGTCATGCTTTGTGGCATGTTTTCATGGGTT TCAATTCCTACTTTGCAAACACATTCCTAATGTTTTGCCGTGCTCAACAGCGTGGATGGTCTCCTAAAGTTGTTTATTTA ATGGGGTTTTTACCTTACGTGAAGATTGAGAAATCAAAAAGCCAGTGA
Protein sequence (LotjaGi4g1v0009000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETLSSFWGPVTSTKECCETNYAHSSYIAEFYNTISNVPTILLALIGLINALWQRFEKRFSVLHLSNMTLAIGSMVYHA TLQRVQQQGDETPMVWEVLLYIYILYSPDWHYRSTMPIFLFLYGAGFAIAHSVLNFGIGFKVHYIILCLLCVPRMYKYYI YTQDVTAKRLAKLFVGTLVFGSLFGFSDRVFCKEISRLPFNPQGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVYL MGFLPYVKIEKSKSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 255 | 255 | 5.1E-167 | – | |
| PANTHER | 1 | 255 | 255 | 5.1E-167 | – | |
| Pfam | 8 | 247 | 240 | 1.0E-52 | ||
| Phobius | 32 | 54 | 23 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 55 | 60 | 6 | - | – | |
| Phobius | 61 | 82 | 22 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 83 | 93 | 11 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| Phobius | 113 | 118 | 6 | - | – | |
| Phobius | 119 | 138 | 20 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 139 | 143 | 5 | - | – | |
| Phobius | 144 | 161 | 18 | - | – | |
| Phobius | 162 | 169 | 8 | - | – | |
| Phobius | 170 | 186 | 17 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 187 | 205 | 19 | - | – | |
| Phobius | 206 | 226 | 21 | - | – | |
| TMHMM | 207 | 226 | 20 | - | – | |
| Phobius | 227 | 255 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ceramide metabolic process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. |
Expression pattern of LotjaGi4g1v0009000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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