Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0009900.1

Overview

Field Value
Gene ID LotjaGi4g1v0009900
Transcript ID LotjaGi4g1v0009900.1
Lotus japonicus genome version Gifu v1.2
Description Tyrosine-protein phosphatase; TAIR: AT4G03960.1 Phosphotyrosine protein phosphatases superfamily protein; Swiss-Prot: sp|Q9ZVN4|Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000; TrEMBL-Plants: tr|I1KNI1|I1KNI1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0009900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:1293930..1298127) extracted from Lotus japonicus Gifu genome v1.2.

CAGAATTTGCATAATCCTGAAACATCAGGGACCAAAAATGTTTTTTAGCCAAATAAAAAGGAAAAAAGGAAGCAACTTTA CACATAAGTGGGGGCTGATTGGAGAAAACAAGTGTCTGGTGGGTTAATCCTCGATCATGTGAGCATATTCTTTCACTACA CGTCTCCGTTTGAGTCATGACATGACACACCAAACTCCAAAGCATCTTACCAAAGATCCTCCTCTCTATCATTCTCAATT CTTAAATCAAACCCTTTTCTCTCTATCATCCTACTGTTACTATAGATAGATCCTGCACTGCAACCAAGCTCAAGATCCTC TGAATCGCGATTTTGCCGCCAAAACCACCATGAAGCTCGACACCTCCAACGGCCAGATTACCCTCTCCTCCGCCGACGCC GCCGCCACCAACGACGACGCCGAGGAGATATTCGTGCCGCCGCTCAACTTCGCCATGGTCGACAACGGCATTTTTAGGTC TGGCTTTCCCGACTCTGCCAATTACGGATTCTTGAAATCCCTCCGTCTCCGTACCGTAATGTGAGTTCCCTTTCTCCATC TTCTCTGAAAATGTTAGGGTATTGTGAGTGTTTGGTCTGATTATGCATGTTTTCGTTCATGCAGATGTTTGTGCCCTGAA CCGTATCCAGAAGCTACTGGGGAGTTTCTCAAGGCCAACGGAATAAGGCTTTATCAATTCGGGATCGATGGCTGCAAGGT CTGTGTTTTTCCCCTTTTCAGTATCACGCTTTGTTGTTGTCTTCAAATCAATTAACTAGAGTTGCTTGATTCCTAACTCA TTGCATGCTTGCATGATGCTTTTGAGCTTTCTATTTATTGGATATTTCCGATCAATGTTTGTCATATTTGGTGTAATTTT CAAGTCTTAGTATGTGTTATTACTGTTATTAGGGTCTAGAAGAGACGTTTAATTCCAACGAGGAATAAAATTGGTGATGG AATAAAATTACTTCTAGGTTTCCTCGTCCGAATTAAACATCCCTTCTAGACCCTAATTAAGTCCCTCTATTAGTTCTAGA CTTCCTCCCTGCATGAGTATGCATGTGCAGGCGTGCTGCACGGAGAAAGGGGCTAGGAATGTGATGCTGAGAGGAATGAA CTTATCATTCATTTAGACAGTCTGAGGGCTTTGAGGCCTTAGCTGTCGCCTGTCGACTGTGAACTGTATAGTCAAGTATT CTCAGTTGTTTTGAGGCTTGTATTCACTAAAATTAAGTTCCATACCATATTAATATGGGCTGAGAAACATGTACCTTCAT TTAGTGTGATGATTCAGGTGGACTATACCTAATAATGTTGTTTTCTAGCACTACAATGTAAGTTTCCTTATTGTTATCAA CATAATAAACTATGTAGTGGCACTTCCTAGGAATTGAAATTTAATATATCTGTTTACCCATGTATTCTCAATTAGTTTTA GGGTTTGTTTGGAGGTCATGTTAGGATAAAGGCGGATACGATAAGAGAGTTGAATAAGAGTAAGATAGTATGTGAGCATG ATAAGTTCTTATCCTATCTAAGTACAATAGCAGCTTCAGTCCCTTTGTCCTTGTGAAGATCTCATATTTCTGTTGAATTC ATGAACAAGACCCAGCCCTGAGTCCTATGTTCCTGAACAGTTCTAGAATCAATTCTGTGCTCCTTCCCCTATCATAGCGT GCCACATTATCAGAAAGTTAATACATCTTATTCTTTCCCTTGACAAAGTCTTGGTTCAATTAAGTTGTGTAGCACAAACT AAAGAAACCTCTTTACCTCCACCTACTAACAGTAACATCCATATTATCTGTGTATAATCTACCCCATACTACAACTGAAT GTTGGAGCTATAAAGGACAATCCAGAACTTGCTGGATCGATGTGTATAATCTACCTCATCCATATGAATTTGATCTTTAT GTGTAGAGCTTGCTACAGATAATGTGGCCAAAATTTGGGGTTGAGACATGGTCCTCATAACTGTCGACCATTAATCTTTA GCAGTTGTTTGAAGCTGTCTCCTATGCTGAATTTGCTCTTAATATTTTCCAATAATCAGTAGTTTTTCAACAGGATGTCT TTAGGTCCCAGGATCACCTAGGGGTATCTCCATAACCCTGAATGATAACATTCCTCCCCCCTCCCCAACATCCCTGCCCC CTCCCCCATAAATTTCCTTCTTCGGCATGAGTGCTTGAGCAAAAGATCATGAATATGATATGATGTCTTATGTTTTAACT GATATATAAAAAAGCATAGTTCTGCAGACTGATCATACGTAATATGGGCAGGAACCCTTTGTTAACATCCCAAACGATAC AATTCGTGAAGCTCTGAAAGTAGCCCTCGGTATTACTAAACCTTGAACTGAACTACTTTAACAGCTTAGCTTGTTCAGTT ATACAGTAACCTAATGGGTGCATGATTTCTTTCTCCAGATGTTAGGAACCACCCCCTGCTGATTCATTGTAAACGAGGGA AGGTTTGAACTTTTTTTTTGTTCTTTGAATCTGTTTTCAGTAATACTTTTGAATTATTAATCGCCAATACTGCTTTGATT TTTTTACAATGAACAGCACCGCACCGGTTGTCTTGTGGGATGCATAAGAAGGTTGCAGAGATGGTGTCTATCATCTGTTT TTGATGAGTACCAAAGGTTTGCAGGTGCCAAAGCCAGAGTGTCAGACCAGAGGTTCATCGAGTTGTTTGATATTTCATCT TTGAAGAACCACCCTCTGTCATTTTCATCCTCTAAAAGATAGAAACGGAAACAATGGGACATCTACTGAGCCGCTGCTTC CTCTCATGGAATATTTCCATGATGAAGTGAAGTTTAATGACTAGTCTTTTATCTTTTTAACCGAAAAATTAGAGCAGGAT GAGTAGGATTTTTAATGATATGTTCTGCTTCCTTTCGTCTTCTTTCCTTTGTGTTTCTATGTTGAATGCCCAATCTATCA ATTTATGCAAAGCTGGGATTTGTCTATTTTATGCAAAGCTGTGGATTAGATGGTCATGACAACAAATTTCTATTAAATTT GACATTGAAATATATGATTAAAAGTTATGCAGCTTGGTCATTATAAATTTCTCCATTTGTTTTCAGAGATCAGTCTTAAA AACATTTTAAGAGCTTATTTTAGAGTAGCTTAAACGAGAGAGCTCATGTAATTAGTCTATGACTAATCAAGCAACTTACT TGCAAACCAAATTTCTCTCAAACTCACCAAAATTGTCACTTAGCCCAACCCACTTTCAAGGGCAACTCATGGGTAACAGA AGAGTATTGATTTATTCATACTATTTTCATCTATTTTTAACTCATCATATTTTTTTTTATCTATATCTTTTATTCATATC ACACCTTCAATCTCATTTCTTAATTACTAGGTACAATTACAAATGTGTTTGGAGTGTCAACCAAACATTTTTCACTTTGC AAAATCTCTTATGATATTCATTCTCATGTTCATGAATTGTCATGAATTGGATTTGTGGTTTAGTATTATTCGTTGCCATA ACTCATATTAACTTGGAAGTATGTACAACAGTACAAGTATCAAGCACCGAGTATACTATTCCCAAACCAGTAAGAACACC AGCTGTCTAATGAAACGACACGAAGATGGTGTACCCCTAAAGTGCAATTAGCATAATCATAATCAAACTAGATGGCTCTA TCAGTATCAAGTATCAACCATGTACTAAATCACAACAGATGATAAACAGTTAAATACATTTGAATGATGAAAAACATGAA CTGAAACTAACAAGTGCATCAGTGAATGAAAAGAGTCCACATGGATTTGAATCTCCATTCGGTTCAAAGTGAAGAAAAAT TAACACATCATCTGCACTTTTCAATTTTGATTAACAAATCATTCACTTAGAAAAAAAAAAGTTTAAAATTTAAATAAAAA GAAAGCAAATGGAAAGAGATGTAGAAGAGTAACAATCGTATCGCCAACCAAACAAAGGACGACCGAAACGATGACTCGCC GATTCGATATGCCTCAATATTCACAACGGTAAGACACTTTCAACAGTCTCACCATTAACACGAAAAAATTGAGGACTTCC TTTCCCATGAAAACAAAAGCAAAGCACTGAAATTGAAATTCCTAGAAAAACAAACTATTCTTCTTGACAACCCTAATCCG CCGTTGGACGCAATATGAAGATGGAGACTGGTAAATCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0009900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCTCGACACCTCCAACGGCCAGATTACCCTCTCCTCCGCCGACGCCGCCGCCACCAACGACGACGCCGAGGAGAT ATTCGTGCCGCCGCTCAACTTCGCCATGGTCGACAACGGCATTTTTAGGTCTGGCTTTCCCGACTCTGCCAATTACGGAT TCTTGAAATCCCTCCGTCTCCGTACCGTAATATGTTTGTGCCCTGAACCGTATCCAGAAGCTACTGGGGAGTTTCTCAAG GCCAACGGAATAAGGCTTTATCAATTCGGGATCGATGGCTGCAAGGAACCCTTTGTTAACATCCCAAACGATACAATTCG TGAAGCTCTGAAAGTAGCCCTCGATGTTAGGAACCACCCCCTGCTGATTCATTGTAAACGAGGGAAGCACCGCACCGGTT GTCTTGTGGGATGCATAAGAAGGTTGCAGAGATGGTGTCTATCATCTGTTTTTGATGAGTACCAAAGGTTTGCAGGTGCC AAAGCCAGAGTGTCAGACCAGAGGTTCATCGAGTTGTTTGATATTTCATCTTTGAAGAACCACCCTCTGTCATTTTCATC CTCTAAAAGATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0009900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLDTSNGQITLSSADAAATNDDAEEIFVPPLNFAMVDNGIFRSGFPDSANYGFLKSLRLRTVICLCPEPYPEATGEFLK ANGIRLYQFGIDGCKEPFVNIPNDTIREALKVALDVRNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGA KARVSDQRFIELFDISSLKNHPLSFSSSKR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31126:SF47
1 190 190 2.3E-119 –
PANTHER
PTHR31126
1 190 190 2.3E-119 –
Gene3D
G3DSA:3.90.190.10
27 177 151 5.7E-52
IPR029021
PRINTS
PR01911
28 45 18 1.1E-29
IPR020428
SUPERFAMILY
SSF52799
28 175 148 2.04E-39
IPR029021
CDD
cd14528
28 174 147 9.88539E-98 –
Pfam
PF03162
29 182 154 1.1E-59
IPR004861
PRINTS
PR01911
65 78 14 1.1E-29
IPR020428
PRINTS
PR01911
84 98 15 1.1E-29
IPR020428
PRINTS
PR01911
101 115 15 1.1E-29
IPR020428
ProSitePatterns
PS00383
123 133 11 -
IPR016130

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0009900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…