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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0010400 |
| Transcript ID | LotjaGi4g1v0010400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G03965.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q24306|DIAP1_DROME Death-associated inhibitor of apoptosis 1; TrEMBL-Plants: tr|G7JKF7|G7JKF7_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi4g1v0010400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1327870..1329957) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGATTACTAGTATTTAGTGTAACGCATTTGGGTTTGTGTTCCTAAAGAGAGACGAACAATAACTCAAAACTGCGGGG TGACCAAGAGAGTATACTATAAACAAGAAAGGGAACCCCGTTTCTTCATCCGTTTGTTTTCTTCTTCTTCTTCTTCTCTT CAGATTCATCTCTCTCTCTCTGTTTCCTTCTATTTTGTCCTTTCTTCCATTTCAATTTCTTCATCCTCTCTCTCTTACAC TCTTCTTCGATTTTGAACTTCTCTACTGTTCCCCACGCGGTGAGGGATTATAAATGTCCTTCACGGGATCTCGCTGTTCT TTCATCCGTTTTTAATCTTCTTCTTCACTGCATCATCTTCTAGCTCCGAGTTGTCCAGATGAGTCAACTCGGTCTCATCC TGCAGGAATCGCTCCGCAATGAAAGAGAAGCAAGAACCATCTTCGGTTTGCTAACCGAACAAATCGACGCCGGCGATACA GCTCACCGGAGGAGGCGCACCCTCAAAGAACGCCTCAGATTCACCGGAATGGGCTGCTGCGGTGCCACCTGGGTCTTCCG TCCCGTCCGCCAGGACCATCACGAAGAAGCTAGAGGAGAAGAAGGAACAAGAACTGTACAGCAACATCAACAGCAAGAGG AGATCCAGCAGGGTCAAGATCCGGACCCGTTGGTACCCGAATGCGTGGGTCCGGGTCCATCGGGCACGGGGATGAATCTC GCGGCGGCGTTGGCGGCGGAGCGGCAATTTCGGGGATCAGGGGAATCGGAGGGGGAGACGCCGTTGAGAGTGTCGTTGAT GAGGCTGTTGGAGGAAACGGAGGTGGAAACAACAGCAACGGAGAAAGGAGGAGAGGGGAATGATTCGGTGTGCTGCGTGT GTATGGGAAGGAAGAAAGGTGCAGCGTTCATACCATGTGGTCACACTTTTTGCAGGGTGTGTTCCAGGGAGCTCTGGTTG AACCGAGGGAATTGCCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATCTTCTGAAACTCAAATTCATCTTGGAT CCATCAACCCTAAACCCACAATTTTTCTTTCTTTTTCTGCCATTAAACTTGGGTTGATTTTTCAGGTGTAACATGATACT ATGATAGTAGTTGAATTTGCTACCTATTGAAAATTTAATTAGTCTATGTTATCTTTGTATATTAATAGTACTATTAATTC ACTTTTCCCCGTAAATTTGGAGATGCCGACTCTTTTATATTCAGAATTTAGTTACAGTTAAAATTTTCTTCATCTCTCAT CCTGATCAAGAGTGTATTATGTGGATTGCAGAATCAAACCTAATAGCTCTTCTCTGCTACTAGTTGGTCACTCGGTCTAT TTGTGTTGTTAATTGAGTTACCCTAAGTGGTTATATGGTCCTTATCTAGGGTTTAGCTACTAATTTGGGTATGTAAATGG TAAAAAATGGACAAAGTTCCCCTTGATAAACAAATGTGACAAAGAAGCAAAACCAAGTCTTCATAACTTTTTATTTATGA GGAAAAATGTGGGGAATCAATTTTTTAAGTAGGGGACCATTTTCATTATTTTAATTTGGGGAAATGTTTTTCATTGTACT CAATTTGTTACAATTGGCCTATAAAATATTCAAATAATTGAGGCGTTGTAAGCTTGAAATAGTGACATTTTCACATAAAT AATAGTGCGGCAGCCAACATTCAACAGGAGCACACATTTCCCTTGATGTGGTCATGGGCTGAATGACTGGTACACACTAC ACAGGATTGGATATGGCTATGAGATTTTCATAAATGAAAAGGAAAAAACTATTCTGCAAAATCATTCAATTTATTAGTAT AGGTTGAATTAGGTTAGAGTATTAATAAATTTTTCTTTCAAGACATATTAGACCAAGGCATCAAGTGAAACAAATCAACA CATACAAATCAATGTATAATAGATCCTAATTACGAGTAATAAAATTGAGCACCACAACTTCTAAATACAATACAAGTTCG TTTACTCTAATCAGCATCAATATTTAACAATAAAAAGAAATTCATCAATAAAATGCTACTCCAAGTCTCTGAAACTCTGT CTTTGATT
CDS sequence (LotjaGi4g1v0010400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCAACTCGGTCTCATCCTGCAGGAATCGCTCCGCAATGAAAGAGAAGCAAGAACCATCTTCGGTTTGCTAACCGA ACAAATCGACGCCGGCGATACAGCTCACCGGAGGAGGCGCACCCTCAAAGAACGCCTCAGATTCACCGGAATGGGCTGCT GCGGTGCCACCTGGGTCTTCCGTCCCGTCCGCCAGGACCATCACGAAGAAGCTAGAGGAGAAGAAGGAACAAGAACTGTA CAGCAACATCAACAGCAAGAGGAGATCCAGCAGGGTCAAGATCCGGACCCGTTGGTACCCGAATGCGTGGGTCCGGGTCC ATCGGGCACGGGGATGAATCTCGCGGCGGCGTTGGCGGCGGAGCGGCAATTTCGGGGATCAGGGGAATCGGAGGGGGAGA CGCCGTTGAGAGTGTCGTTGATGAGGCTGTTGGAGGAAACGGAGGTGGAAACAACAGCAACGGAGAAAGGAGGAGAGGGG AATGATTCGGTGTGCTGCGTGTGTATGGGAAGGAAGAAAGGTGCAGCGTTCATACCATGTGGTCACACTTTTTGCAGGGT GTGTTCCAGGGAGCTCTGGTTGAACCGAGGGAATTGCCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATCTTCT GA
Protein sequence (LotjaGi4g1v0010400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQLGLILQESLRNEREARTIFGLLTEQIDAGDTAHRRRRTLKERLRFTGMGCCGATWVFRPVRQDHHEEARGEEGTRTV QQHQQQEEIQQGQDPDPLVPECVGPGPSGTGMNLAAALAAERQFRGSGESEGETPLRVSLMRLLEETEVETTATEKGGEG NDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 213 | 213 | 2.4E-98 | – | |
| PANTHER | 1 | 213 | 213 | 2.4E-98 | – | |
| MobiDBLite | 68 | 99 | 32 | - | – | |
| MobiDBLite | 78 | 92 | 15 | - | – | |
| Gene3D | 142 | 213 | 72 | 1.4E-13 | ||
| SUPERFAMILY | 150 | 210 | 61 | 6.41E-15 | – | |
| Pfam | 162 | 208 | 47 | 1.5E-11 | – | |
| CDD | 165 | 202 | 38 | 2.71369E-8 | – | |
| SMART | 165 | 202 | 38 | 2.6E-6 | ||
| ProSiteProfiles | 165 | 203 | 39 | 10.852 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0010400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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