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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0013500 |
| Transcript ID | LotjaGi4g1v0013500.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 1; TAIR: AT1G11820.2 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1; TrEMBL-Plants: tr|K7MJE4|K7MJE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0013500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1706083..1709557) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTTTCCACTTCATCACTAGGTAAAATCAAACACTTCCCAAACAAACTCTTCAACTTTTGTAATATTAGCAAGTAGCA ACCGCCACAAACTTAACTCTGCTTCTTCTTCTTCTCTCTGCTTTTGCATTAATTTCAGCAGCTCAAGTGTCACATTCACA TTCCAATGCTCATCCTTTCCAAAATGAACAAGCTGAAGCTGAAGAAGAAGAAGAGAAAGTACCATTCGTGGGTGTGAACA TTGGCACAGACGTAGCAAATCTCCCACCAGCTTCAGAGATAGTGGCGTTTTTGCAGACACAGAAAATCACACACATTCGT GTCTACGACGCCAACACAGAAATCCTCAAAGCCCTTTCCGGTACCAAAATTCGCGTCATCATCTCCATCCCCAACAACCA GCTTCTCGCCATCGGCTCCTCCAACACCACCGCCGCTTCATGGATCGGCCGCAACGTCGTCGCTTTCTACCCACAAACCC TCATCACCGGAATCTCCGTCGGCGACGAGGTTCTCACCACCGTCCCCTCCTCCGGCCCTCTCCTCCTCCCCGCAATGCAA TCCCTCTACTCCGCCCTCGTCGCCTCCAACCTCCACCAGCAAATCAAAATCTCCACCCCTCACGCCGCCTCCATCATCCT CGACCCTTTCCCACCTTCCCAAGCTTTCTTCAACCAAACCTTCTCCTCTGTGATTCTCCCTCTGCTTCAGTTTCTCTCCA AAACTGAGTCCCCTTTGATGATGAATCTTTACCCTTACTATGTCTACATGGAGAACAAGGGTGTGGTTCCTCTGGACAAT GCTTTGTTCAAACCTGTAACACCTAATAAGGAAATGGTGGATCCCAACACCTTGCTTCACTATACCAATGTGCTCGACGC GATGATCGACGCTGCTTATTTCTCCATGAGGATTCTCAATGTCACTGATGTTGTTGTTCTTGTGACAGAAACAGGATGGC CTTCAAAGGGTGATTCTAAAGAGCCTTATGCTACAAAAGACAATGCTGACACTTATAATTCCAATTTGATAAGGCATGTT TTCGATCGTAGCGGAACCCCTTTGCATCCGGAAACTACTTCCAGTGTGTTTATCTATGAGCTTTTTAATGAGGATTTGAG GTCTCCGCCGGTTTCGGAGGCCAATTGGGGGCTGTTTTATGCCAACACTACGGCGGCGTATTTGCTTCATGTGTCCGGGA TAGGGAGTTTTATGGCGAACGACACGACCAACCAGACTTACTGCATTGCCATGGAGGGCTTTGATACCAAGACATTGCAG GCCGCGCTGGATTGGGCGTGTGGGCCGGGGAGGGCGAATTGCTCGGAGATTCAGCCCGGAGAGAGTTGCTACCAGCCTAA CAATGTGAAGGGGCATGCCTCTTATGCGTTTGATAGCTATTTCCAGAAAGAAGAGAAGGCTGCTGGGACTTGTGACTTCA ATGGAGTAGCTATGATCACTACCACAGACCCCAGTAAGTGCCTGCATACAAGAATTCTACAGTTTTTTTTATTTTATTTT ATCAATTTAGTGTTTTGATGTTGCCATGGTGTTCAATTATGCTGTTAAGCTTGATTCTTGATTGAAATTTGCTGCTAATT GATGCATGAGGAATCTGGAGCTTCAAAATTACATAGTGAATGTTTGGATACTCGTTTGAAAATTATGGTGAAGCCAAAAT AATGGTCAATAGAAGCCACTTCCCTTAGTTTTTGCTTCTATCTACCACGATTTTGGCTTTACCGTATTTTCAAACATGCA CATATTGACTTATGCAGGGTTTATAAGAGTTCATTTGAACTTATCTCATATCATAAACACTTATGCGAGTGCTTAGTAAG GTTACGAAAATAGCTTATGATCTACCTAGTTTTTTTGAGCTTATTTTAAAAAGTTTTTAATGGTTAAATGACAGAAATAT AAACAAAAGCAGAAAAATAAAGGGAAGAATTCAGAAAAAATTGGAGAAGAAGGTGTTAGAAGTCCCACATTGCCTAGAGA TAAGGCCAATCAAGTGTTTATAAGGGTTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCA ATTTCTAATATGGTATCAGAGCCTATCCTAGATCCATTTGTTGTGTGGAGACCTCCCATATTTGGGCCACCCGTTGTTGT TCCCACGTTCCAGTCTGTTCAATCCTGGACGTGAGGGGGTGTGTTAGAAGTCCCACATTGCCTAGAGATAAGGCCAATCA AGTGTTTATAAGGGTTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAGA AGGATCTACATTGATAATACTTGAAACTTGCAGAAAACAAACTAAGCTTCTAGCAATCGTTATCAGATTAACTTGAATAA GTGCTTATACCTATCTATAAGTTATTTCGAGCTTGTTTTGATAAGCTTCTGTATAGGCACTTATAAGTTTTTTTTTGCCA AAAGTGCCTAATTACATTTACTCAAGCTCACCCTCGGTCCTTGAGGAAGAAAGGCCAACATCTTTTCATTTTTATTCCCT ATTTTCATGTGGCTATGTTATGCGTTTAAAATCCTTCTTGTTTTGCCTAATTAGGTTACTTTGTGGTAATAAAGTAGAAT TAACCTTTAAAGAGTAATGAAATGGAAGTCTTTGTGTTTTTATTTTTTCTGTAAGTAGGAAAGTAAAAAGTCTTGTGTTG TGACTACTGTAAGAAACTTTAAGATTGGAAAAGGGGTGATGATTTATGATTTAAATATAGAACTATGGCGAGGTAATGAT TCCTGAAATGAAATGCATTTGTGTGGCACCCACACACTTCAAAAGCACTTTTTATGTAAAAAATTGAAATTGAAATGAAA AAAGTGCTTTGCCATAGAGTAGTACCCACACTCCATGAGTTGGATGTTGGTTTGTCATTTTGTCTGAGAGCACCTTGTTT CCCTGACAATTGCAAAGATTCTGGACCGTGTTTCTAGATTACCTTCACATAGTACTAATTTTACTTGCCTTCCAATTTTT CACTGGTATATAACACTTGTGACTATTTTGCATGTTTTTCTCTTTGTTGTGTTGTGTCTATTTCAGGTATAACACTTGTG ACTAATATTATTTTTTGTTTTTTGTGGGGAATACCTTTGCAGGTCACGGGAGCTGTATATTTCCTGGAAGGTAAGAAACC TTGTCTTTGTTTTATTATCCTCAAAATCTGAATAGTGGAATTTTTATTTAACAAGTGTGAGTCTTTACCTAAGTGTGATT CCTCACTCTATGTGATGCAGCAAGAAAGTAAGCAACGAGACAAAGGAAGTGGTGAACTCTACACAATCAAGCAATGCAGG GGAGAAGTTAAGGTTCAGAGCAACCTTCAGCAGCATCAAAACAAATGTAGTTAACAACATTTTGCACATTTTATTGGCTG CATATCTCCCCACTTTGTTGTTAGTCCTTTTGTAA
CDS sequence (LotjaGi4g1v0013500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCCCTCTACTCCGCCCTCGTCGCCTCCAACCTCCACCAGCAAATCAAAATCTCCACCCCTCACGCCGCCTCCAT CATCCTCGACCCTTTCCCACCTTCCCAAGCTTTCTTCAACCAAACCTTCTCCTCTGTGATTCTCCCTCTGCTTCAGTTTC TCTCCAAAACTGAGTCCCCTTTGATGATGAATCTTTACCCTTACTATGTCTACATGGAGAACAAGGGTGTGGTTCCTCTG GACAATGCTTTGTTCAAACCTGTAACACCTAATAAGGAAATGGTGGATCCCAACACCTTGCTTCACTATACCAATGTGCT CGACGCGATGATCGACGCTGCTTATTTCTCCATGAGGATTCTCAATGTCACTGATGTTGTTGTTCTTGTGACAGAAACAG GATGGCCTTCAAAGGGTGATTCTAAAGAGCCTTATGCTACAAAAGACAATGCTGACACTTATAATTCCAATTTGATAAGG CATGTTTTCGATCGTAGCGGAACCCCTTTGCATCCGGAAACTACTTCCAGTGTGTTTATCTATGAGCTTTTTAATGAGGA TTTGAGGTCTCCGCCGGTTTCGGAGGCCAATTGGGGGCTGTTTTATGCCAACACTACGGCGGCGTATTTGCTTCATGTGT CCGGGATAGGGAGTTTTATGGCGAACGACACGACCAACCAGACTTACTGCATTGCCATGGAGGGCTTTGATACCAAGACA TTGCAGGCCGCGCTGGATTGGGCGTGTGGGCCGGGGAGGGCGAATTGCTCGGAGATTCAGCCCGGAGAGAGTTGCTACCA GCCTAACAATGTGAAGGGGCATGCCTCTTATGCGTTTGATAGCTATTTCCAGAAAGAAGAGAAGGCTGCTGGGACTTGTG ACTTCAATGGAGTAGCTATGATCACTACCACAGACCCCAGTCACGGGAGCTGTATATTTCCTGGAAGCAAGAAAGTAAGC AACGAGACAAAGGAAGTGGTGAACTCTACACAATCAAGCAATGCAGGGGAGAAGTTAAGGTTCAGAGCAACCTTCAGCAG CATCAAAACAAATGTAGTTAACAACATTTTGCACATTTTATTGGCTGCATATCTCCCCACTTTGTTGTTAGTCCTTTTGT AA
Protein sequence (LotjaGi4g1v0013500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSLYSALVASNLHQQIKISTPHAASIILDPFPPSQAFFNQTFSSVILPLLQFLSKTESPLMMNLYPYYVYMENKGVVPL DNALFKPVTPNKEMVDPNTLLHYTNVLDAMIDAAYFSMRILNVTDVVVLVTETGWPSKGDSKEPYATKDNADTYNSNLIR HVFDRSGTPLHPETTSSVFIYELFNEDLRSPPVSEANWGLFYANTTAAYLLHVSGIGSFMANDTTNQTYCIAMEGFDTKT LQAALDWACGPGRANCSEIQPGESCYQPNNVKGHASYAFDSYFQKEEKAAGTCDFNGVAMITTTDPSHGSCIFPGSKKVS NETKEVVNSTQSSNAGEKLRFRATFSSIKTNVVNNILHILLAAYLPTLLLVLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 334 | 334 | 5.8E-192 | – | |
| Pfam | 1 | 211 | 211 | 9.6E-47 | ||
| Gene3D | 1 | 217 | 217 | 1.2E-70 | – | |
| PANTHER | 1 | 334 | 334 | 5.8E-192 | – | |
| Phobius | 1 | 351 | 351 | - | – | |
| SUPERFAMILY | 1 | 211 | 211 | 1.61E-50 | ||
| ProSitePatterns | 126 | 139 | 14 | - | ||
| SMART | 228 | 313 | 86 | 2.6E-48 | ||
| Pfam | 229 | 300 | 72 | 5.2E-20 | ||
| Phobius | 352 | 372 | 21 | - | – | |
| Phobius | 373 | 373 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0013500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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