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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0017000 |
| Transcript ID | LotjaGi4g1v0017000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide transporter; TAIR: AT2G02040.1 peptide transporter 2; Swiss-Prot: sp|P46032|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3; TrEMBL-Plants: tr|I1KRN5|I1KRN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0017000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2171602..2176621) extracted from Lotus japonicus Gifu genome v1.2.
GTCTACATGAACCGCCTATGTTGTGCGGTAGAAAATTAGTCACATAAACTTTATGACGTCTATGAGACTTTTTTAAAACA ATTTATTTCAGGGAATTAAAGCTATGGATTTATTTTTTCTTCAGGGACCATTATAGATTAAAGTGTATAAATGAGGGACT AAAACATCTAAGAAGTTATTTATAATTTAGTTACTTCACTGTAAGATGAACTTCAAATCTTCAGCCGTGTGAACTGGCGG AGAGATATGGGCTCTACAGAGAATGGTTCCTCGCTTGTGGAAGAGGCTCTTCTTCATCTTCAGGTTCCCCTTTCTCTCTC TCTTTCTCTCTTGATTTTTATCCACAAATTTTGTGCATTTATATTCGTTTTTCAAACATATTCATAGCACTTTGGTGATG AAATCTACTTTTGATCTTTTCCTGTATACCCTTTTGTTGTTAAACATCAAATGTTGATCTTTGATGAGATTTCCATTGTG GAACAGCAAAATATTTAATAAAGTCAACGCCTTTCTTGACTTTTCCACATTTCAACCTTTGGGAAGAAGTGGAATTTTGC TATATGATGAACAATTGGTTATTTTTTATCTGCAGGATGAAGAGAGTAAACGATACACGGGAGACGGTTCGGTTGACTTT AAAGGGAGACCTGTTCTTAAGCAGAACACTGGCACTTGGAAAGCATGTCCCTTTATCCTAGGTAGGTAATATTTTTCATT TCTCTGATAATCAAATATATCTTCTTTTTTATGTTTGAATTGGATTTTTAACATAATATTGAATCACAGGCAACGAGTGC TGCGAACGTTTGGCGTACTATGGCATTGCAACAAATCTCGTGACCTATCTTACCCGCATACTACACGAAGGAAATGTCTC TGCTGCGAGAAATGTCACCACTTGGCAAGGCACTTGTTATCTTACAGCTCTCATTGGAGCTGTTCTGGCAGATTCTTACT GGGGACGATACTGGACAATTGCCGTTTTCTCCACGATTTATTTCCTTGTAATGTCAAACTAACATAGGTTTATTCTCCTT TTCAAATAATTCTATATACGTCTCGTTCTTGATATACTGCTTTAAATGCCCTACACAATTCTTATAGTGCTAAGCAAAAT ACATACTTGCAGTATGCAAGGTTTCATCTTGCATTTGTATGCGTTATACAGCATTCTGCATAATAATAACTTGCAATGGT GATAGGATGTTATTGAACCATTTCTAAGTCTTCTTTATGTGTGGAATTAGGTCCCGATTGGATGAGCTTATTTGAGCTCA TCTTATACCATAAGTGCTTATGAAAGTGTTTGGGAATTGGGAGAGCTTATGTAAATAGCTTATGGCCTACCTATAAGAGC TTATGCTTTTTCATAATCTAATTTCAGATTATTTCATTAAGTTTCTCAATTTAGCTTAGGAATAAGTGCTTTGTGATAAA CGCTTATTGCCATTAGTGCTTAATTAAGTTGTTCACCCGAAAACACCCTTAATGTCTTTTATAGATTTCATTGCAACTGA CTAGAAAAATGGTGATGGATAAGGAGGGAAATAAAATGTTATGCTGTTAAAGACATTTGGCAAAGGGAGTGTCTGAAGAT CAGTTCTGGTGTACCATGATCCAAACTTCTTCCTTCCATTGCACTGCTTCTACTGTATATTGAAGTTTCTTAGTATGGAA GTGAGAAGTTCCTTTGATGGATTCCACTTGAGCTCTGAATATAATTTGCAGAGGCATTCTCACTTTAGAAAAGCTATAGG GATGATATTAGGAGCAATTGGTGTTTGGCTGGTATTCTTTGTCGACATTTTGTATTATGTGCATCCTTAGCTTCTATATG CTTTTTTGTTCGATTCTCTTTACAAGTTTTAATAGTAACATGACTGTTTCATCCAGGGGATGTGTACATTGACTCTTTCT GCATCTGTTCCAGCATTGAATCCTGCCGAGTGTTTGGGTTCCGTATGCCCTCCAGCTACTCCTGCGCAATATGCTGTGTT TTTCTTTGGTCTCTACCTGATTGCACTTGGGACTGGTGGTATTAAACCATGTATCTCATCTTTTGGGGCAGATCAGTTTG ATGATACTGATCCTCGGGAAAAGGTTAAGAAGGGATCCTTTTTCAACTGGTTTTATTTTTGCATCAACATAGGTGCTATA GTATCAAGCACTTTCGTTGTATGGGTTCAAGAAAATAGGGGCTGGGGTCTTGGATTTGGCATTCCTGCTTTATTTATGGC ATTAGCCATTGGAAGCTTTTTCATAGGCACACCCCTCTACAGGTTTCAAAAGCCAGGGGGAAGTCCTGTTACAAGAATGT GCCAGGTTGTGGTAGCATCTTTCCTGAAGCGGAATGTGGTTGTCCCTGAGGATAGTAGACTCCTGTTCGAGATACCGGAC AAGAGCTCTGCAATTGAAGGAAGCCGAAAACTGGAGCATAGTGACGAACTTAGGTAAGTGTTTTGTTTATTTTGGATTGT CGTTGTTGTATTATTTAGCTTTGGTTTCAACAAAGGAAAAGGAGTTTCTTATCTTGCTTGTTAACTTATTCCTAAGATTC TTGTAATAGTGTAATTTGTCTTCCTGCCAAATCCAAATTTTAGGCTAGTGTAGTGTGATACGAGTCCCCAATCTATTTGT CTTCCTTACGGCCTTGTTTGTCACACCAGATATGGCCTGATTGGAGAGGAAAATTAATAATATTTACAACCTTTATCCAG TGTTTAAAGGAATAACAGATAGCAGAACAACACTCTCTCTGGTCATGTACTCTATCAGATGATTTCAGGACGGCGCTATT TAGCAACTCATACTGTAACCCTTGTTGCACCTCTTTATCTGTTCTATGAGTCGCCTTTGTTATTACCCATAAACTTCCTT CCTCTGAATCTCTGATTAGACACGATATCTGCCACAATCATCAAAGTTGGAGGAGTACCTTTTAGAGAGAATAGCCAATG TGCAACTTCTGTCAAGTCTTTATGCCTCTAATGGATTTATCCATATTCTTATCCAAAATTTTAGTGGGTCTTTATATTTC CCAAACTTTTAGGTGCAAGATTTTAGTCTGAATTCAACTATCATCTGCTTTGAATTTTCCTGCAAATTCCACTCAGAAAA AGTTGTGTTTGAGAATGTTACTGGAACCCTGGATAGGAGAAGATCCTTGGATGGTTTAAATGTCACCCGAACCAGATTAG ACTATGTATGAATTGCATTGGCTTTGAGATCGGTGCAATGTGTAGGAGTGATTTCATCGGCTTTGATATCCATAAATTTG TGTTGCTGGGTAAGCATTTGATAGGAAGCATACATTTTTATGCTGACGACTGATTACCAGTTGCTTAACTAGTTATTGTG TTCTCATTTTGTTTCTTAACTATTCATGATTAGACATTCATGTATGAACATTTGAGATCTTCATGCATGGCTCAACATTG CTCATAGTTGTCTTTTTGTATTTGCTTATGGATATCATCGAGGAATGCCTTGTTAAATAATATAAACTCTTTTCTTCAAG AGGGATGAGAAGTGTAACATTGTTGTCAGCTATTTTTTTTAGTGGGCTAGTAGCAAATTCATTGTTTTTTGTTTATGCTT TCCCTTGTTATACGAATATATTGTCTTTAATAGTTTTGTTATTTGTAGGTAAACAATTTCATTTCTGCTAATATATATTT TTTTAAGTTTGTGTATTAATAATAATTTGTTCTATTATTGATAATGGCTCAAGTTTACTTACCTACTTCAAAATATTTTG AAATTTTTATGTAATATATGTCATCAGTGATCGTGGCTTCATGCGCTCTTCTAAAATTCATTTCTTTTGTTTTAATGCAG GTGTCTTGATAAGGCAGCTGTAGTGTCTGATGCTGAGAGGAAAAGTGGCAATTATTCTAACCTGTGGAGACTTTGCACAG TAACACAGGTGGAGGAATTGAAAATCTTGATCCGCATGTTTCCAGTTTGGGCTACTGGAATAGTTTTCTCTGCTGTTTAT GCTCAGCTATCAACATTGTTTGTGGAACAAGGAACCATGATGAACAGAAGTATAGGTTCCTTTAACATTCCTCCAGCTTC TCTCTCATGTTTTTCTTTAATAAGTGTTATCTTCTGGGTGCCCGTGTATGATAGGATCATAGTTCCCGTCGCGAGAAAAT TTACAGGCAAGGAGAAGGGCTTTTCAGAGTTGCAAAGAATGGGAATTGGCCTTTTTGTTTCAGTCCTGTGCATGTCAGCA GCTGCTATTGTGGAGAATACACGTCTGCGGCTTGCAAGAGAGCTTGACATTGTCGATAAACCTGTGGCTGTACCAATTAG TATACTTTTGCTAGTCCCTCAGTATTTATTATTTGGGGCAGCAGAAGTATTCACATGCGTGGGACAGATTGAGTTCTTTT ATGACCAATCTCCGGATGCTATGCGGAGTTTATGCACTGCTTTGCCACTTCTGACTGTTTCATTGGGGAATTACTTAAGC TCTTTCATTCTCACTATAGTAACATACTTTACTACACAAGGCGGAAATCCCGGATGGATTCCAGATAACTTGAACAATGG TCATCTTGATTACTTTTTCTGGCTTTTAGCTGGACTTAGCTTCTTAAATATGTTGGTGTATATTGCTGCTGCCAAAAGGT ACAAGCAGAAGAAGGCTTCCTAAGATTTTTCAGGCATTTTTGAGGAGGGGAACCACATTCTGCTATTCCCTCTGTCATTG CAGTGATTGTTCTGCATAGATATAAAAATAATTTGCAATCATGTACTTTTCACTTACAAAGGAAAATCTGTGTTATGTCT GTTGTGGATAGTTAATTGTGTCATTCATGTCCATTGTGGATAGTTAATTTTCACTTTCTCAATATTCCAACAATTACTAC ATTTATAAGTTTTGATATAGAAAAGGTATGGAGTATGGTTCCTTAAAGTGAGAGGTTCACTTTAGTCATAATAGTGAGCA GGTGATTGATCAAAAAATCAACAGAGACAAGGCTAGACATAGCCAGGGGAGTTGGGTTTG
CDS sequence (LotjaGi4g1v0017000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTCTACAGAGAATGGTTCCTCGCTTGTGGAAGAGGCTCTTCTTCATCTTCAGGATGAAGAGAGTAAACGATACAC GGGAGACGGTTCGGTTGACTTTAAAGGGAGACCTGTTCTTAAGCAGAACACTGGCACTTGGAAAGCATGTCCCTTTATCC TAGGCAACGAGTGCTGCGAACGTTTGGCGTACTATGGCATTGCAACAAATCTCGTGACCTATCTTACCCGCATACTACAC GAAGGAAATGTCTCTGCTGCGAGAAATGTCACCACTTGGCAAGGCACTTGTTATCTTACAGCTCTCATTGGAGCTGTTCT GGCAGATTCTTACTGGGGACGATACTGGACAATTGCCGTTTTCTCCACGATTTATTTCCTTGGGATGTGTACATTGACTC TTTCTGCATCTGTTCCAGCATTGAATCCTGCCGAGTGTTTGGGTTCCGTATGCCCTCCAGCTACTCCTGCGCAATATGCT GTGTTTTTCTTTGGTCTCTACCTGATTGCACTTGGGACTGGTGGTATTAAACCATGTATCTCATCTTTTGGGGCAGATCA GTTTGATGATACTGATCCTCGGGAAAAGGTTAAGAAGGGATCCTTTTTCAACTGGTTTTATTTTTGCATCAACATAGGTG CTATAGTATCAAGCACTTTCGTTGTATGGGTTCAAGAAAATAGGGGCTGGGGTCTTGGATTTGGCATTCCTGCTTTATTT ATGGCATTAGCCATTGGAAGCTTTTTCATAGGCACACCCCTCTACAGGTTTCAAAAGCCAGGGGGAAGTCCTGTTACAAG AATGTGCCAGGTTGTGGTAGCATCTTTCCTGAAGCGGAATGTGGTTGTCCCTGAGGATAGTAGACTCCTGTTCGAGATAC CGGACAAGAGCTCTGCAATTGAAGGAAGCCGAAAACTGGAGCATAGTGACGAACTTAGGTGTCTTGATAAGGCAGCTGTA GTGTCTGATGCTGAGAGGAAAAGTGGCAATTATTCTAACCTGTGGAGACTTTGCACAGTAACACAGGTGGAGGAATTGAA AATCTTGATCCGCATGTTTCCAGTTTGGGCTACTGGAATAGTTTTCTCTGCTGTTTATGCTCAGCTATCAACATTGTTTG TGGAACAAGGAACCATGATGAACAGAAGTATAGGTTCCTTTAACATTCCTCCAGCTTCTCTCTCATGTTTTTCTTTAATA AGTGTTATCTTCTGGGTGCCCGTGTATGATAGGATCATAGTTCCCGTCGCGAGAAAATTTACAGGCAAGGAGAAGGGCTT TTCAGAGTTGCAAAGAATGGGAATTGGCCTTTTTGTTTCAGTCCTGTGCATGTCAGCAGCTGCTATTGTGGAGAATACAC GTCTGCGGCTTGCAAGAGAGCTTGACATTGTCGATAAACCTGTGGCTGTACCAATTAGTATACTTTTGCTAGTCCCTCAG TATTTATTATTTGGGGCAGCAGAAGTATTCACATGCGTGGGACAGATTGAGTTCTTTTATGACCAATCTCCGGATGCTAT GCGGAGTTTATGCACTGCTTTGCCACTTCTGACTGTTTCATTGGGGAATTACTTAAGCTCTTTCATTCTCACTATAGTAA CATACTTTACTACACAAGGCGGAAATCCCGGATGGATTCCAGATAACTTGAACAATGGTCATCTTGATTACTTTTTCTGG CTTTTAGCTGGACTTAGCTTCTTAAATATGTTGGTGTATATTGCTGCTGCCAAAAGGTACAAGCAGAAGAAGGCTTCCTA A
Protein sequence (LotjaGi4g1v0017000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSTENGSSLVEEALLHLQDEESKRYTGDGSVDFKGRPVLKQNTGTWKACPFILGNECCERLAYYGIATNLVTYLTRILH EGNVSAARNVTTWQGTCYLTALIGAVLADSYWGRYWTIAVFSTIYFLGMCTLTLSASVPALNPAECLGSVCPPATPAQYA VFFFGLYLIALGTGGIKPCISSFGADQFDDTDPREKVKKGSFFNWFYFCINIGAIVSSTFVVWVQENRGWGLGFGIPALF MALAIGSFFIGTPLYRFQKPGGSPVTRMCQVVVASFLKRNVVVPEDSRLLFEIPDKSSAIEGSRKLEHSDELRCLDKAAV VSDAERKSGNYSNLWRLCTVTQVEELKILIRMFPVWATGIVFSAVYAQLSTLFVEQGTMMNRSIGSFNIPPASLSCFSLI SVIFWVPVYDRIIVPVARKFTGKEKGFSELQRMGIGLFVSVLCMSAAAIVENTRLRLARELDIVDKPVAVPISILLLVPQ YLLFGAAEVFTCVGQIEFFYDQSPDAMRSLCTALPLLTVSLGNYLSSFILTIVTYFTTQGGNPGWIPDNLNNGHLDYFFW LLAGLSFLNMLVYIAAAKRYKQKKAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 114 | 114 | - | – | |
| PANTHER | 18 | 585 | 568 | 1.7E-298 | ||
| PANTHER | 18 | 585 | 568 | 1.7E-298 | – | |
| SUPERFAMILY | 42 | 584 | 543 | 1.96E-27 | ||
| CDD | 47 | 581 | 535 | 0.0 | – | |
| ProSitePatterns | 104 | 128 | 25 | - | ||
| Phobius | 115 | 137 | 23 | - | – | |
| Pfam | 115 | 545 | 431 | 1.8E-132 | ||
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 138 | 156 | 19 | - | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 177 | 201 | 25 | - | – | |
| Phobius | 202 | 224 | 23 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| ProSitePatterns | 203 | 215 | 13 | - | ||
| Phobius | 225 | 229 | 5 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 230 | 250 | 21 | - | – | |
| Phobius | 251 | 347 | 97 | - | – | |
| Phobius | 348 | 369 | 22 | - | – | |
| TMHMM | 352 | 374 | 23 | - | – | |
| Phobius | 370 | 388 | 19 | - | – | |
| Phobius | 389 | 409 | 21 | - | – | |
| TMHMM | 389 | 408 | 20 | - | – | |
| Phobius | 410 | 429 | 20 | - | – | |
| TMHMM | 428 | 450 | 23 | - | – | |
| Phobius | 430 | 450 | 21 | - | – | |
| Phobius | 451 | 469 | 19 | - | – | |
| Phobius | 470 | 493 | 24 | - | – | |
| TMHMM | 470 | 492 | 23 | - | – | |
| Phobius | 494 | 513 | 20 | - | – | |
| TMHMM | 513 | 535 | 23 | - | – | |
| Phobius | 514 | 537 | 24 | - | – | |
| Phobius | 538 | 556 | 19 | - | – | |
| TMHMM | 555 | 577 | 23 | - | – | |
| Phobius | 557 | 576 | 20 | - | – | |
| Phobius | 577 | 586 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0017000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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