Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0017700.2

Overview

Field Value
Gene ID LotjaGi4g1v0017700
Transcript ID LotjaGi4g1v0017700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description V-type proton ATPase subunit F; TAIR: AT4G02620.1 vacuolar ATPase subunit F family protein; Swiss-Prot: sp|Q9ZQX4|VATF_ARATH V-type proton ATPase subunit F; TrEMBL-Plants: tr|I3S5X5|I3S5X5_LOTJA V-type proton ATPase subunit F; Found in the gene: LotjaGi4g1v0017700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:2248827..2255889) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCAACAGAGTTCAAATTCCTACCAACAAATCGTCACTTATCGCCATGATTGCAGATGAGGTAAGAGCGTAGTGATG TTGTAATTGAAGTACTTACTGTTACTGACTGTAGAACAACAGATATTTGCGTGTTTCTCGTGCATTGCCCTTTAGATTTT CAACTCGCGTTTATAATGACAACATTCAAAAGGCTTATGACAACTACTTTATTTAATACAGGATACTATAGTTGGCTTTC TGCTGGCTGGTGTGGGAAATGTTGACATACGTCGGAAGACGAATTACCTTATTGTGGATTCAAGTATGTCATTGAACTAT ATTTCACTTACTTTTTTCTGCGCGTGGTTTGTATTAAACTATACAATGTTTTTATTTATTCTTAAATTGTGTATATTGTT GGAAACCCAACAATCTGGATTCAACAATGAACAGAAAGAACTCAAAATAACCAAGAAATGCAGTTGATTGTTTATTGAAA GTAAATGGAAAAATACAGAGAGGGAGTAGTAATCCCAGATTCTGACCAGAGCTCAGCTCCTATAGGAAGCTCATTGCTTC CTATTCATTCTAATTCCTCGAATGATCAAAAGATACCCTCAACCTCTCACTCTATTCCTTAATATCTAGACGGTTACAAC CAACTCTACTGTGGGGTCCTTAATTCTGATTGACCTTCCTACCCTTTCTGGAATATACCTTCCACACCTTAGGCCCAGCT GAACCATGTAGTGCTAATGGGCCTTCCACTGGATCGCAGGTCCTAACAACACCCCCTCCTAAAACAGCAACCTTGTCCTC AAGGTTGAATGCAGGAAACTGACTGCTGATTGTGAGTGTGTCTTCCCAAGTAGCCTCTTCTTCAAGCTTTCCTTTCCAAT GCACCAACACTTGGTGAACCTCAGCGCCCTGCTGTTGCACTGTACGCGTTGCCAGAATGTTGTCAGGTTCAATCAGATCA GAACTTTCTCCTTCCAATTGCGTAGGAAGTTCTTCCTCCTCTGTGTACTCCCCTACCGCTTTCTTAAGCAAAGAGACGTG GAATACTGGATGAACTCGGGAACCTTCTGGCAATTTCAACTTGTAAGCCACTGCTCCTATGCGTTCTATCACCGGATACG GCCCATAATATCGAGCAGCCAATTTCGCGTGAACTCGAGTCACCACCGATTGTTGCCGATGGGCTCTTAACTTAACGAAG ACCCACTCCCCAATGGCAAACGAGCGGTCCACACGCTTAGCATCCACCTGCGACTTCATACGAGTTTGGGCTCGCAAGAG CTGAGTTTTAAGTTGCCGGAGAGCTTCGTCTCGATCAACCAGCTCCTGTTGGACAGCGGCGACGCGCGTTTCTCCCAATC CCCATCGCGCGAGAGCGGGAGGCTTGCGGCCATAAACAACTTCAAATGGGGTGAGCTGGGTCGCGGAATGGTACGTGGTG TTGAACCAGTACTCCGCCCAGTGTATCCACATAGCCCAGGTCTTAGGTTGATCAGCGGAAAAACACCGAAGGTAGGTTTC AAGGCAACGGTTGGTCACCTCCGTTTGCCCATTCGATTCCGGATGATACGCTGAACTGAGCTTCAGTTGTGTCCCTTGGA GCTTGAAAAGCTCTTTCCAGAAGTGACTCATAAATATGGGGTCGCGATGGCTTACGATTGTTGACGGAATTCCATGTAAG CGTATAACTTCCTTGGTGAAAATTTCTGCAATGCTACGAGCTGTATAAGGGTGTTTCAGAGGAATGAAATGGCTGTATTT TGACAAGCGGTCGACGACGACAAGAATCGCCTCATAGCCCCTCGATTTTGGAAGTCCTGTGACAAAATCGATTGAGATGT CTTCCCAAATCCGCTCAGGAATCGGAAGAGGTTGCAGAAGGCCCCCTGGAGAAGTAGCAAGATACTTTTGTCGTTGGCAA ATGTCACAACGTCGAACAAATTCCTGAATAACATTCTTCATTCCCACCCAGTACAAGTTGGCCGCTAACCTGCGATATGT TCGCAAAAAACCCGAATGCCCTCCCTGGGGAGAGTTATGGAACTCGTGGAGCATTTTTGGGATCATTTGAGAGTGCTTGG ACAGGACCAAGCGGTCTTTGTAGAACAGAACACCCTGTTGGAGCCTGAACTCGGGGTGCGACATTAGGTCCTCTTGCTTC TCTTTAATTACTTGCTGTAAGTGTGGGTCAGCAAGGATCTCTTCTTGGACCTGACGTTGTTCATCCCAACTTGGGTAAGA CAGCAGGGTCTGCAACTCCATTCCTTCTTGGATTCGTGAAAGAGCATCCGCTCCCCTGTTCAATTTTCCTGGCTTGTAGC GAATCTCGAAGTCATACCCAAGCAATTTAGCAGTCCAATTCTGTTGATCTCCTGTGGCCACTCGCTGCTGTAGTAGTTCC TTGAGACTCTTCTGGTCGGTAGTAACCACGAATCTCCTACCTAGAAGATAAGGCCGCCAATGTTGTATGGCCAACGCGAT TGCCATCAGCTCCTTCTCATACGCTGATTTAGCCAAATTTCTCACCCCAAGTGCCTTGCTATAATATGCTATGGGATTCT TTCCCTGCATCAGGATTGCTCCTAATCCCGTGCCCGACGCGTCGCATTCGATTAAGAATTCCTTCTCAAAGTTAGGAAGT GTCAACACCGGAGCTGTGGTGAGTTTCTCCTTAAGAGTGTCAAATGCTAGCTGTGCATCAGAGTTCCAGCAGAAGGCATC TTTCTTTGTCAGGTCAGTGAGTGGTTTTGCTACCTTTCCGTAATCCCGAATGAATTTCCGGTAATAACCGGTCAATCCCA AGAACCCTCTCACTCCTTTCACAGTTTTTGGGGTTGGCCACTCACGCACGCTCACTATTTTGCTGGGATCAACCTCTACC CCTTGTGCTGAGATCAAATGCCCCAAGTACTCCACCTTGTCACGAGCGAATTGGCACTTCTTCTTATTTGCGGTCAGCTG ATGTGTGCGCAAGGTTTCCAGCACTGTGCTCAAATGTTCCATGTGAGTAGTCCAATCCTTGCTATATACGAGTATGTCGT CGAAGAAAACAAGGACATACTTGCGGAGCATGGGCCTGAAAACTTCGTTCATCAGACTTTGGAAAGTTGACGGGGCGTTC ATCAAGCCAAATGGCATGACGAGGAATTCGTAATGCCCTTCATGAGTGCGGAAAGCGGTCTTGTGTACATCCTCTGCTTT TACTCGCACTTGGTGATATCCAGATTTTAAATCAAGCTTTGAGAAGAAGCTTGCCCCATGTAACTCGTCTAACAATTCCT CAATAACTGGTATTGGGAATTTGTCAGGTACTGTCACCTTGTTCAAGGCCCTGTAGTCAACGCACATTCTCCATGTTTGA TCCTTCTTCTTGACAAGAATGACAGGGCTGGAATATGCACTGGTGCTGTTGCGTATGATCCCAGATTCTAACATCTCCTT CACTTGCTTCTCGATTTCATTCTTGTGCAGGTATGGATATCGGTATGGTCGCACACTAATTGGTCCATGTCCTTCCCTGA TATTGATACAATGCTCTTTCCCTCTACTGGGTGGTAAACCAACCCGTTCAGTGAATATGTCAGCGTACCGTTCCAAGACA CACTTCAACTCTGTGTGTAAGGCTACTGGCAGAATTGGCTCTTCTGGTTGTTCAATTCTGCAATTCCCCACTGTCCGCAA TTCCCCTTGTTCAGTTCTAGGGACTCTCCTGACAATGCTTTGAAGGGCTACTGGAGCTTCTTGCCCTGCTTCGATTCCTA GTAGCGTGACCCACTGTGTTCCATCCCAGAACTTCATTGAGCGTTTGCTCCAATTGATTAAGGTATCTCCTAGAGTCTTC AACCACTCAATCCCCAGCACGAGATCCGGTCCTCCTAACTCGAAGAGATATGGAGTGCATTTGAGTGAGTATGACCCGAG CTCCAACTTCACCAATTTGCTCCTGCCCTGGGTGTGTGTTCGATATCCATCCCCGAGCTTGATCGACATCTTGGGAGTGT CTTCGGTTTCCCATCCCATCCTCTGAACTAATTTTTGCTCGATGAAGTTGTGTGTGGCCCCACTGTCCACTAGTACTAGC ACCGGAACCCCATGAATCTTTCCTTGGAGCTTCATGGTTTGAGGATTGGCATCGGGCTCGTGAGAGAGGTTGAACAAGCC CATTATGCTCAGCTCTCCTTCCAGATCCCCTTCTTGTTCTTCCATCTCCATTGCCAAAAGCTTGCTATCTTCTGCATCAT CGTCGCCGTCTTCAACAATAAGCACGCGGAGCTGCTTATCGGGGCACTGATGCATGGGATGGTAAGGCCCACCGCATTTG AAACATTTCCCTTTTTGCTTACGGTCCAGCAGTTCTTGGTAAGTGAGGTGAGAAAAACCACGATCCCTTGGCCCAACACG ACGCGTTTCACCTTGGGCCTGCTGTTCAACCCTTGGCCCATTTTGTCCAGTTTTTGTTACTGCGGCCCCATTGTCTTTTG CCCCACGTACCCAGATCCAGTCACTCCCTCTCTGTTTACTTGACCCGTTCGCTCCGGCCTGAAAACCCGGTCCGTTCCCT CTGGATCCCCGAGAATAACCCGATCCACTATCCCCTTTCACCTCCTTCTCTACCACACGCGCAGCCATCAACAGCTTTGA TCGACTCATACCCTCCATTATCGCCAAGCTTCGAACTTTTCCCCTAATTTCCTCCTTCAATCCATGAAGGAAATACCCCT GGAATTGCTTATCAGGCAAACGAGGGATCTGGGCTGTTAAATACTCGAACTCGGTGATGTATTCATCGATCGACCCACGC TGACGTAACTCTGTCAGCTGTTCGTACACATCGCCCTCCCCATGGCCACCGTACCGCTCCAGAAGTGCGTCACGAAGCTT CTCCCACGACAGTGCAGCATCGGCTTCCAGTAGTGAATTGAAGAAGTGGATGGTTGGCCCCTCCATGCTCAACTGTGATA GACTCACCTTCACCGCCGGTGATGTACCTTGCACCCGGAAATAGACCTCAGCTCGTGAGATCCAACCGGCTGGGTCCTCT CCGTTGAACATCGGCAGCTCTACCTTCTTGGCAGAGTGTCGAAATTCCAGCAATGCATCTCCCTGCAACCCACTTGATTC TCCGGCGCTGGGTATAGCTCCCATCGGTTGTGGTGTTCCTCCGTTCCTTTGATTCACGCTCTCTTCTCCGATCTGTACTG ATTTTCCCATCGATTTCTCCAGCATAGCAACCAGCGTTGCAGGTAAGTCCTTGACCGCGGTGGTCACCGCCGCGAGAGAC GATCGCATCTCCGCGAGCTCACCCTCCAATGCATCGACCTTGGCCTCCATCTTCTGACCGGTGTGCTTGGTCTTCTTCGG TGGCATTCACTGATTTCGGAATGGGTATCCGGCAGGTCGGACCAGTTTGTTGGAAACCCAACAATCTGGATTCAACAATG AACAGAAAGAACTCAAAATAACCAAGAAATGCAGTTGATTGTTTATTGAAAGTAAATGGAAAAATACAGAGAGGGAGTAG TAATCCCAGATTCTGACCAGAGCTCAGCTCCTATAGGAAGCTCATTGCTTCCTATTCATTCTAATTCCTCGAATGATCAA AAGATACCCTCAACCTCTCACTCTATTCCTTAATATCTAGACGGTTACAACCAACTCTACTGTGGGGTCCTTAATTCTGA TTGACCTTCCTACCCTTTCTGGAATATACCTTCCACACCTTAGGCCCAGCTGATCCATGTAGTGCTAATGGGCCTTCCAC TGGATCGCAGGTCCTAACATATATCATGAAATGCCTTCCTACTTGTTTAACTACTGTCTAGACTGTGGTAGATAAGATAC CCAATTAAAGTATCCCTATGTTCTTTTATGTTCTTAATAAAGGCTTATTATCGTTTATTGAAGACATAATAAGAAGAGGC ATGTACCTCCATCCTAAATGGGATATGTTGAAAAGTAAAGTTTTTATAAATAGTCCAAGTTCCTTATCTTAAATATATGC TAAAGGATAGAGAATACATTTCATAGTCTAGACATTGACATTCCTAAGAAACTTTGATATCTCACTTTTGTTGTGCATAT GTTATTTTGCATTACCTTCTCCCCTGTTGTTACTTGGGTTACCACAAATTTACAAGATAGCATCCTTGTTTTTCTTTTAC TGTTGATAGCGTCAAGTTTTGATGATATTTTCATGCTTATTTTATTTATCAGTTTGAAATCAAATTGATTTTTCATTTTA AGTTTTTGTTTTATCTCTTGTTTTTTATTTTCAGAAACAACTGTCAAACAAATCGAGGATGCATTCAAAGAATTCACAAC AAGGGATGATATTGCAATTGTGCTGATTAGTCAATATGTAAGTCCTGTTCTGTGACTATTTAAAAATGGTTTAGGCTGTC ATCTTCATATATATAATGGCCTACTTCCTAGGCCCATTTTCTAGTTCCTTTTGTTAGTTCCTACTTACACAGTTACCCTT ACATATTATGGTTAGGCACATATTTTGTCTGGAAATCAAAGTTATTGTTTTTCTGAAGTCCCGGAGGAAATATTTTCTTA TCACTGCTGAAGCTTCCAAATCTTACATATGAGATTTTGAATGAAAAGATTGCTCAATGAATAATGCTAGCCAGTCTTAG AATTTTATTGGATTGCAATGGGGGCCATACCAATACCAATTCCAATACCATTCAATCATAAATCGGCCCTGCTTTTTAGA TAATCATCCTGTGGGTTCAAATGTTAACAAGTCATATGGTTTCTCACATTTGGTTCAGTTGTTAGTTGAGTCTACTGTTA CACCTATGTGCTCATTCAACTTTTACTTGTGAGCTTGGGTTACGACCCTCATATCCCCCTCCCTATTCAAAGATCTTATA GTTTCTTTCTCTGTGCAGGTTGCAAACATGGTAAGGTTTTTAGTTGATAGTTATAACAAGCCTGTTCCTGCAATACTTGA AATCCCTTCGAAAGATCACCCATATGATCCTGCACATGATTCAGTTCTTTCACGAGTAAAGTATCTCTTTTCTGCCGAAT CAGTGGCATCTGACAGACGCTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0017700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAACAGAGTTCAAATTCCTACCAACAAATCGTCACTTATCGCCATGATTGCAGATGAGGATACTATAGTTGGCTT TCTGCTGGCTGGTGTGGGAAATGTTGACATACGTCGGAAGACGAATTACCTTATTGTGGATTCAAAAACAACTGTCAAAC AAATCGAGGATGCATTCAAAGAATTCACAACAAGGGATGATATTGCAATTGTGCTGATTAGTCAATATGTTGCAAACATG GTAAGGTTTTTAGTTGATAGTTATAACAAGCCTGTTCCTGCAATACTTGAAATCCCTTCGAAAGATCACCCATATGATCC TGCACATGATTCAGTTCTTTCACGAGTAAAGTATCTCTTTTCTGCCGAATCAGTGGCATCTGACAGACGCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0017700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANRVQIPTNKSSLIAMIADEDTIVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTRDDIAIVLISQYVANM VRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13861
1 130 130 6.5E-79 –
PANTHER
PTHR13861:SF10
1 130 130 6.5E-79 –
PIRSF
PIRSF015945
3 123 121 1.3E-51
IPR005772
Gene3D
G3DSA:3.40.50.10580
9 122 114 1.0E-44
IPR036906
TIGRFAM
TIGR01101
10 124 115 2.1E-51
IPR005772
Pfam
PF01990
15 116 102 1.5E-29
IPR008218
SUPERFAMILY
SSF159468
15 99 85 6.28E-17
IPR036906

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0033180
Cellular component Proton-transporting V-type ATPase, V1 domain A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A.
Subterm of
Part of
GO:0034220
Biological process Ion transmembrane transport A process in which an ion is transported across a membrane.
Subterm of
GO:0046961
Molecular function Proton-transporting ATPase activity, rotational mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
Subterm of
GO:1902600
Biological process Proton transmembrane transport The directed movement of a proton across a membrane.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0017700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…