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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0018000 |
| Transcript ID | LotjaGi4g1v0018000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SLOW GREEN 1, chloroplastic; TAIR: AT3G18420.1 Protein prenylyltransferase superfamily protein; Swiss-Prot: sp|Q9LS48|SG1_ARATH protein SLOW GREEN 1, chloroplastic; TrEMBL-Plants: tr|I1KRM4|I1KRM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0018000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2281856..2285296) extracted from Lotus japonicus Gifu genome v1.2.
CCGGTAAATTCAAAAAAAAAGCCCAAACGGGCAGAAAACCGGGTCTAGCCGGTCAAAACCGGTCTGGACCGGTCCCAAAC GGTTGGATGACCGGCTAACCCGGTCATCCACTATAAATACTCCCTTATCACTCCCTCCCTCATTAACCCTAGCCGTTTCC CCTTTCTTCTTCCTCTTCTCTTCTTTTCTTCTTCCTCTTCTCTTCTTCCTCACGACCAACTCCTCACCGCCTTCGACCCG CCACCTCACCGCCACCAAACCCTCCTCACCGCCTCCTCACCGCCACCAAACACCCACAACCTCAAACAAAACCCACCTCT CCGCCACCAAACACCCACAACCACAACCAAAACCACCTCACCGCCACTGACCTACCACCAAACAACCTTCACCGCCACCA AACCCGCCTCACCGCCTCCTCATCGCCACCAAACACCCACCACCGCAACCAAAACTTACCCCAGCCGCCACCAAAGCTTC AATCTGGACCCAAATCGCCCCTCAAGCACTGGATCGGAGACATGCAGGCCTTCCACCCTCCGCCACCCTCCGCCACCGCC ACCAGATCGGAGAAAAACAACTGGATCAAGCTTTCCTACACCCTTCAGCTTCTGTAATTTTTTTTTTTCATTTTTCTTTG TAAAAATTTAATCTTCTGAAGCTTTGTAAATATTTTCTATTTTTATTGTTTGAATAAAATTGTAGGTAGTTCATGCAATC TGTTTCTACTATTTCTTCCCTCTGAAATCTGTTGGAAGTGAATGTGACAGAAAGTATGATATTTTAATTAAGAAACTGAT AAAGCAGAGTTGCTTGCCCACTTTTCCTTAGCTAAGGAACCGTAAGGAACCCTGCTCCAATGGGTAAGAAACTGACCCTT GGTTTCTTAGCACCTCCAACCTGGTTAAGAAACCAGCGTTGGAGTTGCTCTAATGGGTGGGGTGCTAAACCCAAATCCCA CATATGTGTCTCTTGACTCTTCCTTTCTCATAAACCCTCTCAACAAACAAACCCCTCTTTCTTTCATTTCTCATCTTCTC ACTCCACCATTGTTCTTGTTTTCCCCACCCACTCTCTCTACAATCAAACCCTAATTCATTCCCACCACCATGACTTCCAC CTTAGCCACCGCATCACCACCATTCCTCACCTTCAATCCCACCTCCACAACCACACCCTCTCCCCCCACCCTCACCCTCC CCCTCCGCCCCCACCACCGCCGCCTCACCCTCCGTACCCACTCTCACTCCCCCCTCCTCCACCACCTCAAAACCCTCGCC GGCGCCGCCGTCTTCACCGCCGTCGCACTCCAATTCCCCGCCCACCCCGCCAGAGCCGAACCCCCCGCAACCCTCTCCGA AGTCCTCGAAGAAACCAATACCGACATCGAAACGGCGTCGTCTTTGCCACAGTCGCCTCTATCGGAGCTTCTCGAAACGA ACGAGGAGGCCGTCGCCGCGCTCAAGTCCCTCCTGCAGCAGAAGCTCGAGCAAGGCGAGGACGAGGAAGCGCTGAAGATT CTCAAACGGTTAATCTCCGCGCAGCCCGAAGTCAACGACTGGAAGTTTCTCGCCGCGAGGGTAGCCACCGAAACCGGCGA CGCCGAGAGCGGGCGCAGGTTCTACGAGGAGATTTTGGCGGCGAATCCGCTGTCGTTCGAGGCGCTTTTCGAGAATGCCT TGCTGATGGACCGGTGTGGGGAAGGGGAGTTGGTGATTGAGAGGCTGGAGGAAGCTCTGAGGGTTGCGGAGGAGGATAAG AAGGCGAAGGAAGCGAGGGATGTGAGGTTGATAATGGCTCAGATTAAGTTTCTGCAGAAGAATGTGGATGATGCTTTGGA GATGTATGAGCAGCTTACAAAAGAGGACCCTGGTGATTTTAGACCTTATTTTTGCAGGGGAATGATTTATAGTTTGCTTG ATAAGAATGATGAAGCGAAGGTGCAGTTCGCTAAGTACAGAGAGTTGTCACCCAAGAAGTTTGAGGTTGATGGTTACTTG AGGAGCCCATTGTCTAGGATCAAAGTTTTTGGTACAGATCAATGATAGGTGAAGGTTAATTTGAGGTCTTTTTGGCAATT GGAATAAAATAAGGATTGATGGATGGATCATGGATGCAAACACAAAGGTGATTCTACCTGAGTTGAATTCTTTTACTTTG GCACTCTTTAATAATGGGTGGGTGATAGTTGTATGATTAGTGAAAATGATAGAGGTTAGAGAAATAAGGATGTGAATGGA GTGTTCTATTGAACTCCACTACTACACTTTAGTGAAAACTTGGCACTGGCTATTGTTGCTTGTGCTTTCACTTTTCATCC ATCATTGAAATAACTTATAAGATGTAATTTCTTACTGGTATTGCTCTAATACATCATATACCAAACTGCTATTGTGGGAG CCTTGTCTTTCCACCAATGTTTTCAGATATTTATCAATCCATTCTAATAGTGATAAGGGATGATGACATTCTAGTGTCTT TAAAGCATTCTAGTCCCAAATTGTTCACTGCAATCTCCATAATTATGTTTGATTCTTTCTCCATGGATTATTTGTTCATT ATTTCTAATTAATTGCACTGTCACGATACCCAATGATTTCTTTCCCTCCCCTTTTAGAATACAAGGCAATCCAATAGAGG ATTACTGGCAATTATTCTAATTCTTATTTTTGAACGGCTAGCAGAGCCAAGAATATATATCACACATAGTAGGTGTAGTG AAGGGCTGAAGGCTCTTGTCTCCTATCGAAAGAATTGTTCATTCTCTTCTGATGTTATTTCATCAACATTTGTAGGGGTA GTTCCCATGTAGTATAGGCTTACTTTCTTGCTGTACTAGCATTGATGACAATTAACAAGAGGGTGAAAAAAGATAATAGT GGTGTATCATTCTGTCAAATGGGTGGGTGGTCATAGTATTGTTCCAATCCTAAACCCAAAAAAATGTTGAAATGTGTCTT ATACATTATTAACATATATAGGTGATATTGGAGGAAAAAACCACTAGAATGCATCTTGGGGTTCTCAATTGCAGGAAAAT TTCCATTTGGTTGATGTGAGAAGGGTGCAAAGTGTGATATGGGAATCTTGTTAACATTGTCCTCAGATGCAGCAAGGGCA TCAGTTGCTGAATGGGGTGGGGCAGTGCAGGGCATTTCCTTGTATTATGGGAAATAGTCCTTGCTTTGGCCTGTAATTAG TGTAATGATTTTTGAAATTTTATTATATAAAGTATAGGACATGACCAAAATTTTAATATTGAAACTGGAATAAATAGTTG AATATAGTTATTGTTTGGTTGCACCTTTTATATCCGGCTTTGGCTCATACATCAAAATTGCTTAAGCAATATAGGTGGCT TCTAGGGTGAAACTGTCCATTAGATCTTTCACCCATGAATGACCATTTTTACTTGTTATATCAGGTTAGTTACTGTTTAC C
CDS sequence (LotjaGi4g1v0018000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCCACCTTAGCCACCGCATCACCACCATTCCTCACCTTCAATCCCACCTCCACAACCACACCCTCTCCCCCCAC CCTCACCCTCCCCCTCCGCCCCCACCACCGCCGCCTCACCCTCCGTACCCACTCTCACTCCCCCCTCCTCCACCACCTCA AAACCCTCGCCGGCGCCGCCGTCTTCACCGCCGTCGCACTCCAATTCCCCGCCCACCCCGCCAGAGCCGAACCCCCCGCA ACCCTCTCCGAAGTCCTCGAAGAAACCAATACCGACATCGAAACGGCGTCGTCTTTGCCACAGTCGCCTCTATCGGAGCT TCTCGAAACGAACGAGGAGGCCGTCGCCGCGCTCAAGTCCCTCCTGCAGCAGAAGCTCGAGCAAGGCGAGGACGAGGAAG CGCTGAAGATTCTCAAACGGTTAATCTCCGCGCAGCCCGAAGTCAACGACTGGAAGTTTCTCGCCGCGAGGGTAGCCACC GAAACCGGCGACGCCGAGAGCGGGCGCAGGTTCTACGAGGAGATTTTGGCGGCGAATCCGCTGTCGTTCGAGGCGCTTTT CGAGAATGCCTTGCTGATGGACCGGTGTGGGGAAGGGGAGTTGGTGATTGAGAGGCTGGAGGAAGCTCTGAGGGTTGCGG AGGAGGATAAGAAGGCGAAGGAAGCGAGGGATGTGAGGTTGATAATGGCTCAGATTAAGTTTCTGCAGAAGAATGTGGAT GATGCTTTGGAGATGTATGAGCAGCTTACAAAAGAGGACCCTGGTGATTTTAGACCTTATTTTTGCAGGGGAATGATTTA TAGTTTGCTTGATAAGAATGATGAAGCGAAGGTGCAGTTCGCTAAGTACAGAGAGTTGTCACCCAAGAAGTTTGAGGTTG ATGGTTACTTGAGGAGCCCATTGTCTAGGATCAAAGTTTTTGGTACAGATCAATGA
Protein sequence (LotjaGi4g1v0018000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSTLATASPPFLTFNPTSTTTPSPPTLTLPLRPHHRRLTLRTHSHSPLLHHLKTLAGAAVFTAVALQFPAHPARAEPPA TLSEVLEETNTDIETASSLPQSPLSELLETNEEAVAALKSLLQQKLEQGEDEEALKILKRLISAQPEVNDWKFLAARVAT ETGDAESGRRFYEEILAANPLSFEALFENALLMDRCGEGELVIERLEEALRVAEEDKKAKEARDVRLIMAQIKFLQKNVD DALEMYEQLTKEDPGDFRPYFCRGMIYSLLDKNDEAKVQFAKYRELSPKKFEVDGYLRSPLSRIKVFGTDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 37 | 310 | 274 | 9.7E-120 | – | |
| PANTHER | 37 | 310 | 274 | 9.7E-120 | – | |
| Gene3D | 80 | 224 | 145 | 1.2E-11 | ||
| Coils | 104 | 128 | 25 | - | – | |
| SUPERFAMILY | 109 | 289 | 181 | 8.85E-20 | ||
| ProSiteProfiles | 115 | 290 | 176 | 19.568 | ||
| SMART | 115 | 148 | 34 | 180.0 | ||
| Coils | 203 | 223 | 21 | - | – | |
| SMART | 223 | 256 | 34 | 11.0 | ||
| Pfam | 224 | 255 | 32 | 0.011 | ||
| Gene3D | 225 | 294 | 70 | 6.9E-10 | ||
| Coils | 232 | 252 | 21 | - | – | |
| SMART | 257 | 290 | 34 | 36.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0018000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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