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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0019300 |
| Transcript ID | LotjaGi4g1v0019300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aberrant panicle organization 1 protein; TAIR: AT1G30950.1 F-box family protein; Swiss-Prot: sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS; TrEMBL-Plants: tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein; Found in the gene: LotjaGi4g1v0019300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2414040..2416061) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAACCAAATAGCTTCTAGATCACGTCCTTTCTTCCATTTCTAGCTCTATTGCATCACCTTCGCTTCTTCTTAATTAT CTCTCCCCCTTGGCCCCTTCCTTCCCCTCCAATCCCACTGAAAATGAGAAACAGAAACAACAATCCAGGTGTTTGCTATA GCTAGTAGTCAACAACTACAACCACTATCCTTCCAAAGTTCACCTTTTTCCCCCTTTCCAACTTTCCTCTCTTAGGTGCT TCCCTAAAAACCATTTCAACTAACATTTCCACCACTACCTTTCTCAGCAAAAGAAGAAACAATGCATAACCTTTCCTTTC ACATTAAAGGCAACCACCCTACCTAGCATCATCAAACACTCCTCTACATTAATTTCCCTTTTCCTACATTTTCTCAAACC ATATAAAACATATTTCCATATGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTCCCCATCA GTGCTGGTGGTATTGGTGTTGGTGTTGTTGGTGTTGGTAGTAGCAATCTAACCACCCCCACCCCCACTGCCACTGGAACT TACAACAACACTCCATGGATGAACAGCAGGATATGGAGCAAGCTCCCTCAGAAGCTTCTGGACCGAGTCATTGCCTTCCT CCCTACACCGGCTTTCTTCCGAGCACGCTCCGTCTGCAAGAGATGGTACTCTCTTCTCTTCTCTAACACCTTCCTTGAAT TGTACCTCCACCTCTCCCCTCGCCGCCACTGGTTCATCTTCTTCAAGCACAAAACCCGCAAAAACTACATCTACAAAAAC AACAACAACAACATTATTACCGGTTCTGCTGGCACTGCCTCCTGTGAAGGATACCTGTTTGACCCCGCTGAGATGGCGTG GTACCGCATCTCCTTTGCTATGATCCCACCAGGATTCTCTCCAGCCTCATCCTCTGCAGGCCTTCTCTGTTGGGCCTCAG ATGAGGCTGGCCCAAAAACCATGCTTCTCTCCAACCCTATCCTGGGCTCCTTAACCCAGCTCCCTCCAACTCTAAGGCCA AGGCTCTTCCCTTCCATTGGCCTAACCATCACCCCAACCTGCATAGACGTGACTGTAGCAGGTGATGACATGATATCCCC TTATGCCGTCAAGAACCTCACATCGGAAAGCTTCCACATCGACGGTGGAGGCTTTTACTCGATGTGGGGCACGACCTCCC CGCTTCCAAGGCTCTGCAGCCTTGAAAGCGGTAGGATGGTGTGTGCTGAGGGGAAATTCTACTGCATGAACTGCAGCCCT TTTAGTGTTTTAGCCTATGACATTGCATCCACCACTTGGTTCAAGATTCAAGCTCCTATGAGGAGGTTTTTAAGGTCTCC TAACCTGGTTGAGTGTAGGGAGAAGCTGATGCTGGTTGCGGCGGTTGAGAAGAGCAAGCTGAATGTTCCAAGGAGTTTGA GGGTGTGGACGTTGCAGGCTTGTGGGACCATGTGGGTGGAATCTGAGAGGATGCCGCAGCAGCTTTACATTCAGTTTGCT GAGATTGAAGGTGGAAATGGGTTTGAATGTGTAGGGCATGGTGAGTTTGTGGTGATCATGATCAAAGGGACAGATAAGGC GTTGCTGTATGATTTGGTGAGGAAGAGGTGGCAGTGGATTCCGCCGTGTCCTTATGCTGGTTATGATGGGTTTGAGTTGC ATGGTTTTGCTTATGAGCCTAGATTGGCTACTCCTGTTACTGCACTTCTTGATCAGTTGGCACTTCCTTTTCAGAGTTAC AATGCTTAGGTTAATTATTATATCTATGTATGAATGAATGTATGTGGATTGTGTTGTGATGATGTTGTGGTGATTTGTGA ATGAATGTTCCACCCTAGCTAGCTAGCTATGTGACTCAGTTCCTATGTGACTCAGTTTAATTTGTTGTTAGTATGAATGA GTACACTAGTCATTATTTAATCACTTGCTGTTCTACTTGAGCTTTGAGTTGTGGTTTAATTTGGAATCCAAATGATCACA GGCTCATAGATGATTAGCTTTT
CDS sequence (LotjaGi4g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTCCCCATCAGTGCTGGTGGTATTGGTGT TGGTGTTGTTGGTGTTGGTAGTAGCAATCTAACCACCCCCACCCCCACTGCCACTGGAACTTACAACAACACTCCATGGA TGAACAGCAGGATATGGAGCAAGCTCCCTCAGAAGCTTCTGGACCGAGTCATTGCCTTCCTCCCTACACCGGCTTTCTTC CGAGCACGCTCCGTCTGCAAGAGATGGTACTCTCTTCTCTTCTCTAACACCTTCCTTGAATTGTACCTCCACCTCTCCCC TCGCCGCCACTGGTTCATCTTCTTCAAGCACAAAACCCGCAAAAACTACATCTACAAAAACAACAACAACAACATTATTA CCGGTTCTGCTGGCACTGCCTCCTGTGAAGGATACCTGTTTGACCCCGCTGAGATGGCGTGGTACCGCATCTCCTTTGCT ATGATCCCACCAGGATTCTCTCCAGCCTCATCCTCTGCAGGCCTTCTCTGTTGGGCCTCAGATGAGGCTGGCCCAAAAAC CATGCTTCTCTCCAACCCTATCCTGGGCTCCTTAACCCAGCTCCCTCCAACTCTAAGGCCAAGGCTCTTCCCTTCCATTG GCCTAACCATCACCCCAACCTGCATAGACGTGACTGTAGCAGGTGATGACATGATATCCCCTTATGCCGTCAAGAACCTC ACATCGGAAAGCTTCCACATCGACGGTGGAGGCTTTTACTCGATGTGGGGCACGACCTCCCCGCTTCCAAGGCTCTGCAG CCTTGAAAGCGGTAGGATGGTGTGTGCTGAGGGGAAATTCTACTGCATGAACTGCAGCCCTTTTAGTGTTTTAGCCTATG ACATTGCATCCACCACTTGGTTCAAGATTCAAGCTCCTATGAGGAGGTTTTTAAGGTCTCCTAACCTGGTTGAGTGTAGG GAGAAGCTGATGCTGGTTGCGGCGGTTGAGAAGAGCAAGCTGAATGTTCCAAGGAGTTTGAGGGTGTGGACGTTGCAGGC TTGTGGGACCATGTGGGTGGAATCTGAGAGGATGCCGCAGCAGCTTTACATTCAGTTTGCTGAGATTGAAGGTGGAAATG GGTTTGAATGTGTAGGGCATGGTGAGTTTGTGGTGATCATGATCAAAGGGACAGATAAGGCGTTGCTGTATGATTTGGTG AGGAAGAGGTGGCAGTGGATTCCGCCGTGTCCTTATGCTGGTTATGATGGGTTTGAGTTGCATGGTTTTGCTTATGAGCC TAGATTGGCTACTCCTGTTACTGCACTTCTTGATCAGTTGGCACTTCCTTTTCAGAGTTACAATGCTTAG
Protein sequence (LotjaGi4g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGFHPSMTMASPFPYTFPISAGGIGVGVVGVGSSNLTTPTPTATGTYNNTPWMNSRIWSKLPQKLLDRVIAFLPTPAFF RARSVCKRWYSLLFSNTFLELYLHLSPRRHWFIFFKHKTRKNYIYKNNNNNIITGSAGTASCEGYLFDPAEMAWYRISFA MIPPGFSPASSSAGLLCWASDEAGPKTMLLSNPILGSLTQLPPTLRPRLFPSIGLTITPTCIDVTVAGDDMISPYAVKNL TSESFHIDGGGFYSMWGTTSPLPRLCSLESGRMVCAEGKFYCMNCSPFSVLAYDIASTTWFKIQAPMRRFLRSPNLVECR EKLMLVAAVEKSKLNVPRSLRVWTLQACGTMWVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLV RKRWQWIPPCPYAGYDGFELHGFAYEPRLATPVTALLDQLALPFQSYNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 429 | 382 | 4.1E-83 | – | |
| PANTHER | 48 | 429 | 382 | 4.1E-83 | – | |
| SUPERFAMILY | 52 | 132 | 81 | 4.71E-13 | ||
| Gene3D | 54 | 98 | 45 | 8.0E-8 | – | |
| ProSiteProfiles | 56 | 105 | 50 | 11.644 | ||
| Pfam | 58 | 93 | 36 | 2.7E-6 | ||
| SMART | 62 | 102 | 41 | 2.6E-6 | ||
| SUPERFAMILY | 85 | 415 | 331 | 9.15E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0019300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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