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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0019300 |
Transcript ID | LotjaGi4g1v0019300.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Aberrant panicle organization 1 protein; TAIR: AT1G30950.1 F-box family protein; Swiss-Prot: sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS; TrEMBL-Plants: tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein; Found in the gene: LotjaGi4g1v0019300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2414459..2415808) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTCCCCATCAGTGCTGGTGGTATTGGTGT TGGTGTTGTTGGTGTTGGTAGTAGCAATCTAACCACCCCCACCCCCACTGCCACTGGAACTTACAACAACACTCCATGGA TGAACAGCAGGATATGGAGCAAGCTCCCTCAGAAGCTTCTGGACCGAGTCATTGCCTTCCTCCCTACACCGGCTTTCTTC CGAGCACGCTCCGTCTGCAAGAGATGGTACTCTCTTCTCTTCTCTAACACCTTCCTTGAATTGTACCTCCACCTCTCCCC TCGCCGCCACTGGTTCATCTTCTTCAAGCACAAAACCCGCAAAAACTACATCTACAAAAACAACAACAACAACATTATTA CCGGTTCTGCTGGCACTGCCTCCTGTGAAGGATACCTGTTTGACCCCGCTGAGATGGCGTGGTACCGCATCTCCTTTGCT ATGATCCCACCAGGATTCTCTCCAGCCTCATCCTCTGCAGGCCTTCTCTGTTGGGCCTCAGATGAGGCTGGCCCAAAAAC CATGCTTCTCTCCAACCCTATCCTGGGCTCCTTAACCCAGCTCCCTCCAACTCTAAGGCCAAGGCTCTTCCCTTCCATTG GCCTAACCATCACCCCAACCTGCATAGACGTGACTGTAGCAGGTGATGACATGATATCCCCTTATGCCGTCAAGAACCTC ACATCGGAAAGCTTCCACATCGACGGTGGAGGCTTTTACTCGATGTGGGGCACGACCTCCCCGCTTCCAAGGCTCTGCAG CCTTGAAAGCGGTAGGATGGTGTGTGCTGAGGGGAAATTCTACTGCATGAACTGCAGCCCTTTTAGTGTTTTAGCCTATG ACATTGCATCCACCACTTGGTTCAAGATTCAAGCTCCTATGAGGAGGTTTTTAAGGTCTCCTAACCTGGTTGAGTGTAGG GAGAAGCTGATGCTGGTTGCGGCGGTTGAGAAGAGCAAGCTGAATGTTCCAAGGAGTTTGAGGGTGTGGACGTTGCAGGC TTGTGGGACCATGTGGGTGGAATCTGAGAGGATGCCGCAGCAGCTTTACATTCAGTTTGCTGAGATTGAAGGTGGAAATG GGTTTGAATGTGTAGGGCATGGTGAGTTTGTGGTGATCATGATCAAAGGGACAGATAAGGCGTTGCTGTATGATTTGGTG AGGAAGAGGTGGCAGTGGATTCCGCCGTGTCCTTATGCTGGTTATGATGGGTTTGAGTTGCATGGTTTTGCTTATGAGCC TAGATTGGCTACTCCTGTTACTGCACTTCTTGATCAGTTGGCACTTCCTTTTCAGAGTTACAATGCTTAG
CDS sequence (LotjaGi4g1v0019300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTCCCCATCAGTCCCACCCCCACTGCCAC TGGAACTTACAACAACACTCCATGGATGAACAGCAGGATATGGAGCAAGCTCCCTCAGAAGCTTCTGGACCGAGTCATTG CCTTCCTCCCTACACCGGCTTTCTTCCGAGCACGCTCCGTCTGCAAGAGATGGTACTCTCTTCTCTTCTCTAACACCTTC CTTGAATTGTACCTCCACCTCTCCCCTCGCCGCCACTGGTTCATCTTCTTCAAGCACAAAACCCGCAAAAACTACATCTA CAAAAACAACAACAACAACATTATTACCGGTTCTGCTGGCACTGCCTCCTGTGAAGGATACCTGTTTGACCCCGCTGAGA TGGCGTGGTACCGCATCTCCTTTGCTATGATCCCACCAGGATTCTCTCCAGCCTCATCCTCTGCAGGCCTTCTCTGTTGG GCCTCAGATGAGGCTGGCCCAAAAACCATGCTTCTCTCCAACCCTATCCTGGGCTCCTTAACCCAGCTCCCTCCAACTCT AAGGCCAAGGCTCTTCCCTTCCATTGGCCTAACCATCACCCCAACCTGCATAGACGTGACTGTAGCAGGTGATGACATGA TATCCCCTTATGCCGTCAAGAACCTCACATCGGAAAGCTTCCACATCGACGGTGGAGGCTTTTACTCGATGTGGGGCACG ACCTCCCCGCTTCCAAGGCTCTGCAGCCTTGAAAGCGGTAGGATGGTGTGTGCTGAGGGGAAATTCTACTGCATGAACTG CAGCCCTTTTAGTGTTTTAGCCTATGACATTGCATCCACCACTTGGTTCAAGATTCAAGCTCCTATGAGGAGGTTTTTAA GGTCTCCTAACCTGGTTGAGTGTAGGGAGAAGCTGATGCTGGTTGCGGCGGTTGAGAAGAGCAAGCTGAATGTTCCAAGG AGTTTGAGGGTGTGGACGTTGCAGGCTTGTGGGACCATGTGGGTGGAATCTGAGAGGATGCCGCAGCAGCTTTACATTCA GTTTGCTGAGATTGAAGGTGGAAATGGGTTTGAATGTGTAGGGCATGGTGAGTTTGTGGTGATCATGATCAAAGGGACAG ATAAGGCGTTGCTGTATGATTTGGTGAGGAAGAGGTGGCAGTGGATTCCGCCGTGTCCTTATGCTGGTTATGATGGGTTT GAGTTGCATGGTTTTGCTTATGAGCCTAGATTGGCTACTCCTGTTACTGCACTTCTTGATCAGTTGGCACTTCCTTTTCA GAGTTACAATGCTTAG
Protein sequence (LotjaGi4g1v0019300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGFHPSMTMASPFPYTFPISPTPTATGTYNNTPWMNSRIWSKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTF LELYLHLSPRRHWFIFFKHKTRKNYIYKNNNNNIITGSAGTASCEGYLFDPAEMAWYRISFAMIPPGFSPASSSAGLLCW ASDEAGPKTMLLSNPILGSLTQLPPTLRPRLFPSIGLTITPTCIDVTVAGDDMISPYAVKNLTSESFHIDGGGFYSMWGT TSPLPRLCSLESGRMVCAEGKFYCMNCSPFSVLAYDIASTTWFKIQAPMRRFLRSPNLVECREKLMLVAAVEKSKLNVPR SLRVWTLQACGTMWVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCPYAGYDGF ELHGFAYEPRLATPVTALLDQLALPFQSYNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 30 | 411 | 382 | 3.5E-83 | – | |
PANTHER | 30 | 411 | 382 | 3.5E-83 | – | |
SUPERFAMILY | 34 | 114 | 81 | 1.05E-12 | ||
Gene3D | 36 | 80 | 45 | 7.5E-8 | – | |
ProSiteProfiles | 38 | 87 | 50 | 11.644 | ||
Pfam | 40 | 75 | 36 | 2.6E-6 | ||
SMART | 44 | 84 | 41 | 2.6E-6 | ||
SUPERFAMILY | 67 | 397 | 331 | 6.41E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0019300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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