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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0019600 |
| Transcript ID | LotjaGi4g1v0019600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase QRT3; TAIR: AT4G20040.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O49432|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr|A0A151S624|A0A151S624_CAJCA Polygalacturonase QRT3; Found in the gene: LotjaGi4g1v0019600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2449387..2457127) extracted from Lotus japonicus Gifu genome v1.2.
CAACCGTGTAATTAGTTGAGCCGACCAGAATGCTATAGGGCTTAGTGGTTTGTTCGGCCGACAAAATACTAAAGACATTT ATGTAATATTTTGAGAATAATAAAATAAAGAGTTCCAATTCACTCACACTTTCACTTTATCTACATATCATTTTCTTATT TCTCTTTCAACTAGATCATTTATAACATCTTTTATTTTTCTCTATTTTCTTTATTTTTCTTTATACTCCATTTACTAGTA AAATGAAGTGCGAGCAAATTCTTTATCATGAAACAAAATAGGTGAACAAAATAGGTGAGCACATAGGGTGTACCTAGCAA CTATATATAAATGTCCACACCTGCCTCTGCTTCCGTGTCTACTTCAAAGCTTACAAGGGCATTGAGGCCACCAATTCAAT GTACTAAAAGCATAACACATGGGCCTTCACTTTTCATGCTCACCTAGCTTTTAACCCTGAAAAAGAAAAAAGGAAAAAAA AAGTTATATACCGACCAAATACAAATAGTCTCTTCCAGAAGAAACTCAATCACCTGTTTTGTTTATCAGAAGAAGACCAA ATGCAAATATCTTCTGAAAATTCAGTGTCAAGTATGAGATTCTCAGTGGTGTGTTTTGTCTTACTATTATTGGTGGTAGT TGAGGCAGCTACAAGTTTCAGTTTCACCAACAGAGAGAAGAAGCTACATGAATTCAAGCACAAACTTGAGCAAAAGCTAA TTACTAGTACTCCTTTAGCATCACCACCTGCTTCTTCAGAAACAAAATTGGTAAGCTACATTACATTAAATTTTTTTTCT ACTGATTTCTAGAATTTTCCCATGAAACTAACAAACAGTAATAGTTTTTCTATGCTTCTTTTTTTTTTTTTTTTTTTTGC TTCAATGTGTATTGTTATTATTAGAGGGGAAGGGTGTTGTACTTGAGTGAATATGGTGCGGACCCAACAGGATCAGAAGA GAGCAGTGATGCCATTTTGAAAGCTGTGGAGGATGCATTTGAGTTGCAGAAGAAGGGTACTCTTGAAATGGTAGCAGGGT TGAATGACTTGGGAGGTGTTGTGATTGATTTGCAAGGTGGAAACTACAGAATCAGCAAACCCATTACTTTCCCTTCATCT GGGGGTGCCAATGTTCTGGTCAGTATATGTCTCTTTTTTTTCATGATCTTCGTTTTTGTTCTTTGGACTCTGTTAGAATT ATTACATCATGTTTAAATAAGTTATTATCATTATTAATATTTTTTTTGAAGGTTATTATCATATCAATTCAATCCTCAGA CATTCATAATTTTTAGCTCAACAATTCAATTCATAAACTTTTACTCATACTACTTCCTTTTCATTTTTTGAAAGTTGACA GAGATTATTAATTAGACCTTTTCTCTTTTTATGCCTATCATTTACTATTTCTTTTGACATTCTTACTTAGTGCTTCTATT ATCATCACGCAACTCTTTATTAATTAGATCTTTCTACTTTTTCTACCGATCATTTATTTCTTCTGGCAATCTTACTTACT TCATCAAGTTTATTTAAGGTGAAAAATTAATAAAAAGATGTGAAAGTATAAAAGTAGCAATTAAATGTTGATGAAATGCA ATATCTTCATTTGAAATCGATTGAATTATTTTGAAACTTAACTCAATTTTTCATTTGTCATCAGTAATAGAGTGTAAAAA AAGAAAGGGAGTAATTATGTCCACCTTAAATTTTTGGTAGACGGGCCTGATAATAATTCCAAGAAACAAGAATCTTTGGA GAAGGAAGCATATCAATTTGCAGAAAAGATTAGCCTCTCAGGAGTAAGAGAAGGCAACAAATTAAATTCATTGACCAACT TCAAAACAGAGTTTGAATTTTGGGGTTGATGAACTAACAGGCACGTTACACGTTGCTACGCCTGCATGCCTCATTGATTC CACCAACCTTGAATGATCCATTATCAATTTGCAGTTAATTGAACCTCACCATCAATCCTTCTCTAACTGCACTTTGCCTC GTCAAAATATTCAAAACTTGTTGTGGAAATTTTCAAACTAATCTTTCTTTGATACAAAAGGAAGGGAGGAACAACATAGA AACCTAGCTGTATGCTGGGTAGTAACTCCACTCATGCCCTCAATAAATCTAGAGTGAAAAGTAGGTATCACAGTACAACG TAGGAAAAACTATCGAACTCACATAGCAATAACAATATACTTACACTTACGACACTCCATGGGGATGAGTAGAGACTCAA ACCTACATACAATTTGTTAGATACGAGACTCTCATTTTCCCCTCGACCAACCTCTAGGTGTTAAAATACACTATTATGAA CAGGTACAATCAAAATCAAACATGCATTTTTTATCCATAAAAGTTATGTTTAATTTTGCCAAAATAGCTAAATCATTAGC ATTACTATGGTGTAACCCTTGGAAGTATTTTTTCACCTTTAACATGTATCTACTTTGCATCTGAACTTTATGAAAACTAT GATTTATTAGGTGCAAGGAGGAACCTTGAGAGCGTCTGATACTTTTCCTGGTGACCGGCATCTAGTTGAGCTATGGTCAT CAAATTCCAAGAAACTTGATAGAACAGAATCTCCCCAAGATGATGAAGGACTAAACGACATGAAGGCCCAAAACAATGCA ATTTACTACGAAGACATAACCTTCAGGGACATCCTCTTCGATTCAAGCTACAGAGGAGGAGGGCTTTTCATAATCGATTC TGCCAGAATCCGAATCAACAACTGCTTCTTTCTGCATTTCGCCACAGAAGGAATTCTGGTCCAGCAAGGACACGAAACCT TCATATCAAGTTGTTTTCTCGGGCAACATCCGACCATTGGCGGCGACAAAGGTGAGAGGGATTTCTCAGGGGTTGCAATT GATCTTGCTAGTAATGACAATGCAGTCACAGATGTTGCAATTTTCTCAGCAGCAATTGGTGTTGTGTTGAGGGGCCAAGC TAACATTCTAACAGGAGTGCACTGTTATAACAAAGCTACATATTTTGGTGGCGTTGGAATCTTAGTGAAATTGCCAGGGA ATTCACAAACTAGAATTGATAACTGTTATCTTGATTACACTGGTATAGTCATGGAAGACCCTGTTCAAGTTCATGTCACT AATGGGCTATTTCTAGGGGATGCTAATGTTTTAGTGAAATCTGTGAAGGGTCAAGTTTTGGGGTTAAACATTGTGGGTAA TATGTTTAGTGGTGATCCTAATAAGAAGGTTCCAATTGTGAAGCTTGATGGGGAGTTTAGTAACATTGATCAAGTGGTGA TTGATAGAAACAATGTGAATGGCATGGGGTTGAGATCAACCGTTGGAAAGTTAACTGTGAGTGGAAATGGGACAAAGTGG GTGGCTGATTTTTCATCAGTTTTGGTGTTTCCTAATCGGATTAGTCATTTTCAGTATTCATTCTATGCTCAAGAAGAGCC TAAGTTTTTAGCACACTCTGTGACCAATGTGTCAGATAATGTGGTCATTGTGGAGAGTGAGAAGGAAGCTAAAGGGTTGG TCTCCTTTGTGGTAGAACAATAAGAAGGAAGATAGAGTTATTGTATTCAATAATGTATAAAAACAAATGCAGTGATGTTT CAGCTTTTGATTTTTTTCTTCTTCGCTCATACAGCTTATTTCTGCTGAAATCAAATTTCTGGCATGTTTTTGTGTTGGTC TTTCTAATTTTCTTCGAACAAGTGTAGTGTAGTGGTTATAAATTATGCAAAGAAATTAACTAGACTTAGGGCATGCTTGA TAATAGTTTGCAAAGCAACAAAGGACACGTTGAAATCAGAATCGCTTATTTCAGGAGTTCCATTCCCAAGAAATGCATCT AATCAAAGTTCTACAAGCAACCTTATAATCATTTAGGCAAACTCCCCACATTCTACATTTCCCAATTCACACATATATAA CATGTGAAAGTCCAATTTCAAGTGTGCTTGGCGAGGAAGGCAAGTATAAGCTGATTCACCTGTTCTGGAAATTGTTCTTG AACAAAATGGGTTCCCTCAGGAATGAATATAGTCTCCAGATTGGGAACAAGCTCTTTTGCTTTTTCACCCTTTGTTAAAT CCTCAATTCCTGGAAACTTGTAAACATAATCCTTGTCACCCATTATCAATAGTGCTGGAACTTTGACCACAGGATCTGGT AAGTTAAAGTCTTCACCAAATGACCTACAAATGCAAACCAAACAAAACAAATCCACCATTAACAATTTACCCATATATCA GAAACCCTGAGAGGTCCAGGAACCATGTTTTGTAGTAAGGTAGCATTTCACATAGACAAGGCAACAAAGGAAAAAATAAG CACCTATATGGAACCTGCAGTGCAGTTCGGAATCCAGATTTCTCATACAAAGATCCGTAAGTTGCGAGATCCTCCTCTGT GAACCAAGTGGGAAGAGGGGTATCTGGTTCCACCAAATCCATGATCTCCTGGTTTTCTTGAGCTATTGGTATTTCACTTT TTGAGAAAAGGATGTAAATATTCCGCACAACAGTTTTCGCATCAACGCGTCCAAAATCAGCCTCTGCTCTCCCTGGTTCC TGATATATTACACAAACAAAGTTATGATCATGAGCTGAGGCTACCAATCATTATAGCTGAAGAGTCAAATGAAGTTGAAT TTATTTACCCGCCATCTCGAAATGTAGAAGCCTTCAGGAAGGTACTTGTGATACACAGAGGGGCCTGGTGGAACATGTGG AACACCCAAAGTGATAACTCCCAAGACCCTTTCCGGGTGCAGAATGGAAAATAGATATGCAGGACGAACTCCAAAATCTT TCCCAACAAGGAACACCTAATGGTTCTTACCGCTTCCGATTTCAGCTATGTGGAGTTTCAGGGTACCCACGTTGATGAAA TTGTGTTGAATTTGATCCATGATTATCAGAGACTGCGTTCATGAAATCACTATCAACTCTGAACTGAACTGCAATGAATT TTTGTCTGGGTTCTTAACAGATAAGGCATTTTAAGATACTAGTATGTAGCCCGTGCAATGCACGGGTGATTTTATGATTA AAAAATTTAATAAGGGTTTTAATTTTTGTGTAGTGGTTAAATATTTTATAATATGTTTAACTTGATATTTAGTAACTGGT ATATATAGCATAAATGGTACTTGATGAATTAAAATGTCTAGTTCTTTCAATGAAATAAAATAAATATAGTGAATACTGAT AGCATGCTATGGCAATTTTCAATGTGTAGTTCTTCCAATGAGATAAAATAAGAAACTGAAACTTTCTTTGACACACTACT ACAACCTACTTTTATAAATAAGTATACAAAGTTAATTTAAACATAGATACCTCAAAGTCTGCAATGCTCCATCTATGGGA GCAGCACGAAGATATCAATGGGCACATTGGATTAGCTAGTAACGTGCAATTTAAGAGAATATGTACTAATTTAGTGTTCG ACAATTCATGTTTAAAAAGTCAAGCGTTAAAGAAAGTTCAATTGGGATCAATTCAACTTATCAAAAACTTCAATCCAACT TATCGTGTATTAAGGAAATGAGATCCTGTAAGAGTTTTTTTTTTTTTTTAAATAAATGAAGAAGTATATAATCAGATTTG AGCTAACAAATAAATAGAAAAAAAAGGCAATACAACAAATCAGGAACAATATATATAATCAAAACTGATACCAAGCACAA TATAAAAAAAAATCCCTTTAATTTTGAGCCTTCAAATTCCAGCTTGAGGACAAATCAACTATGCTAAAATCCTGATCAAT GGAAGAAATAGTTGAACTGTCAACCACATTTTCGCTTTCAACCGTATCCCAATAAGCATCAAAGGTAGATTGCTTATTCA ATTCTTCCACATCTCCAAGTTCTTAACCCATTCATTGGTTGAAACTATCAATCTTCTTTAGACCTCTTGTGTAACACTGC CACCTAACAGAGTCGTCTTAAGAGTAAGAGCCGTGTCCTCTATTCCATCCACGAGAGATAGCTAATTCATTTTCATATTG AGAGATAGCTAAGGAGAAAAAAGAAAAACAAGATGAGCAAAAGTGAGCCAAGGTTCTATCATCTATGAAGTATATTGGAA TTATTAAAATCACAAATCAGATTACTTCCACCCTCACATTATGTGTCTGTAATTGAAAAATTGCATTCACATTGTTGAGA TAATGAACTTCACTGCCTAAGCTCATTAAGGAAAATAATATATGTTTCTTTACCACACCATACTTAACAGATAGAGTAAC AGTCTAACATACAGAGAAGACAACAACCAAGTTATATCTCCGTGAATCATTACATCCAATTACGCAGCACACAAAAGTGT CACAATCCTCAAATTTCATCTTGTTTGTTTTTTTAGTTTTCTAATAATATCCTCACCTGGCAACCAAGATTACAGTGAGC ACTTAAAGCTAGGAACCCAACCATTATCCAGCTTGAGCAACAAAGATTGGTGATTCTCAAATTCTTGATGGAGCATAACA ATGCTCAAATCTTTCATTCCATACATCCCCAAATTGCAACGTAACTGCTTATATATATATTCAAAAAATTGATAACACAG TTAACATTGTCCAAATCCTATTTATCAGACCCATGAGAATATACAAAACACAAACAACTAATTGTTCATATATTCACTTC ACAAATTGATAACATAATTAAAAAGAAAAAAAAAATTCAAGCTATTTGCCAAGAGAAAAAAAATGAAAAGACCAAATTGT TTAGCACACCATTAATTACCTGAGAGCCAGCTAGGTCCTCAAAATGTTTGATCCAATCCTCCATCAGGAATTCGAGGCCC TTAACAGTCTCTTTGTTCTACTCCCTGATCTTGTTGAGTATAATGGTCCATTCAAACCTCAATCCCCATATCTACCTCAT AACTTGCATTCAGATCTGAAAACCCATCCAAGATAATGGTGCATTCAGACCCCATCCAGATATAAACTTTATCAGAAGCA AATTTCAAATTAAAAAAAAAAATTGAATTGTCACTCACCTTGACTTTAATTCTTTTTGCAGTCTAATCTCATTGATCTCA TGAAGCTCAATTAATACAAGCTATTTCTCACCTAACATATTACTCACCTGAAATACCAGATGAATGGTTAAGAATTGTTT CTAACAAAAAGGTTCAACAAAGTCATTATCTCATTTTCAACGTCATTCATAAGAAATTTGTTAAGTAGTATACATACTTG CCTTCACCTCTATTTTCATAGTATCAATTGGAATTGGATATAAATCTCTATCAATAACAACAATTCCATGTGTCCCCTTG TAATAGCACCCTCCGTAAATCTCATCAGACTTATCAGAAACATTGAAATCCTGAAAACATTGAAATCCTGAAACATACAG AAACACATGGACCGAGGATAGAGCGATTCAAAATTGAAGAAGCGAAATTGCTCTTCGTTTGCGGGATAAAAATCCATTAT TTGAAAGATAGATAACCGAAATTGAGAGATGATTCAGGGATTTGATTCGGGAGAGTGAAATTGAATAAGAGGAAAACCAA GAGCAGCCTTAGCGCGTGATAAACACGTCTTCAGGAAATAAGAGAGAGAAGGGGTTTTTGTTATTAAAAAGCTGACGTGG AATTTCCTGATAGAGTGTGTGTGGTTTGAGTACCTCACTCTCCAGAGGAGCCGGGATCCTCAAGTGTAAAAAAACTTGAG AGTGTCAAGTTTTACCATCTCATCATTAACTTTTGTGTAGATAATAAATGAAAAATAAAAT
CDS sequence (LotjaGi4g1v0019600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATATCTTCTGAAAATTCAGTGTCAAGTATGAGATTCTCAGTGGTGTGTTTTGTCTTACTATTATTGGTGGTAGT TGAGGCAGCTACAAGTTTCAGTTTCACCAACAGAGAGAAGAAGCTACATGAATTCAAGCACAAACTTGAGCAAAAGCTAA TTACTAGTACTCCTTTAGCATCACCACCTGCTTCTTCAGAAACAAAATTGAGGGGAAGGGTGTTGTACTTGAGTGAATAT GGTGCGGACCCAACAGGATCAGAAGAGAGCAGTGATGCCATTTTGAAAGCTGTGGAGGATGCATTTGAGTTGCAGAAGAA GGGTACTCTTGAAATGGTAGCAGGGTTGAATGACTTGGGAGGTGTTGTGATTGATTTGCAAGGTGGAAACTACAGAATCA GCAAACCCATTACTTTCCCTTCATCTGGGGGTGCCAATGTTCTGGTGCAAGGAGGAACCTTGAGAGCGTCTGATACTTTT CCTGGTGACCGGCATCTAGTTGAGCTATGGTCATCAAATTCCAAGAAACTTGATAGAACAGAATCTCCCCAAGATGATGA AGGACTAAACGACATGAAGGCCCAAAACAATGCAATTTACTACGAAGACATAACCTTCAGGGACATCCTCTTCGATTCAA GCTACAGAGGAGGAGGGCTTTTCATAATCGATTCTGCCAGAATCCGAATCAACAACTGCTTCTTTCTGCATTTCGCCACA GAAGGAATTCTGGTCCAGCAAGGACACGAAACCTTCATATCAAGTTGTTTTCTCGGGCAACATCCGACCATTGGCGGCGA CAAAGGTGAGAGGGATTTCTCAGGGGTTGCAATTGATCTTGCTAGTAATGACAATGCAGTCACAGATGTTGCAATTTTCT CAGCAGCAATTGGTGTTGTGTTGAGGGGCCAAGCTAACATTCTAACAGGAGTGCACTGTTATAACAAAGCTACATATTTT GGTGGCGTTGGAATCTTAGTGAAATTGCCAGGGAATTCACAAACTAGAATTGATAACTGTTATCTTGATTACACTGGTAT AGTCATGGAAGACCCTGTTCAAGTTCATGTCACTAATGGGCTATTTCTAGGGGATGCTAATGTTTTAGTGAAATCTGTGA AGGGTCAAGTTTTGGGGTTAAACATTGTGGGTAATATGTTTAGTGGTGATCCTAATAAGAAGGTTCCAATTGTGAAGCTT GATGGGGAGTTTAGTAACATTGATCAAGTGGTGATTGATAGAAACAATGTGAATGGCATGGGGTTGAGATCAACCGTTGG AAAGTTAACTGTGAGTGGAAATGGGACAAAGTGGGTGGCTGATTTTTCATCAGTTTTGGTGTTTCCTAATCGGATTAGTC ATTTTCAGTATTCATTCTATGCTCAAGAAGAGCCTAAGTTTTTAGCACACTCTGTGACCAATGTGTCAGATAATGTGGTC ATTGTGGAGAGTGAGAAGGAAGCTAAAGGGTTGGTCTCCTTTGTGGTAGAACAATAA
Protein sequence (LotjaGi4g1v0019600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQISSENSVSSMRFSVVCFVLLLLVVVEAATSFSFTNREKKLHEFKHKLEQKLITSTPLASPPASSETKLRGRVLYLSEY GADPTGSEESSDAILKAVEDAFELQKKGTLEMVAGLNDLGGVVIDLQGGNYRISKPITFPSSGGANVLVQGGTLRASDTF PGDRHLVELWSSNSKKLDRTESPQDDEGLNDMKAQNNAIYYEDITFRDILFDSSYRGGGLFIIDSARIRINNCFFLHFAT EGILVQQGHETFISSCFLGQHPTIGGDKGERDFSGVAIDLASNDNAVTDVAIFSAAIGVVLRGQANILTGVHCYNKATYF GGVGILVKLPGNSQTRIDNCYLDYTGIVMEDPVQVHVTNGLFLGDANVLVKSVKGQVLGLNIVGNMFSGDPNKKVPIVKL DGEFSNIDQVVIDRNNVNGMGLRSTVGKLTVSGNGTKWVADFSSVLVFPNRISHFQYSFYAQEEPKFLAHSVTNVSDNVV IVESEKEAKGLVSFVVEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 12 | 498 | 487 | 7.7E-292 | ||
| PANTHER | 12 | 498 | 487 | 7.7E-292 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 29 | 4 | - | – | |
| Phobius | 30 | 498 | 469 | - | – | |
| SUPERFAMILY | 73 | 459 | 387 | 5.76E-16 | ||
| Gene3D | 78 | 483 | 406 | 1.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. |
Expression pattern of LotjaGi4g1v0019600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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