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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0020100 |
| Transcript ID | LotjaGi4g1v0020100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT1G48100.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|A0A0L9T4I6|A0A0L9T4I6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2509307..2516105) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAACTCATCATTCATTTTGCTTACACAAACAAATTCACAAAGTGCACGTCACCTCCACAGAAACTTCCTGAACTCCG TTTGAAAAGAGAAACAAAAAAACCCCATCATCATTCATCAGGTGAGGTTACAAAGACATGCATACATGATATTCTTTGAA TTTAGTTCTCTTACATTTTTTTCATATCACTTTATTTGTTTATGATACAATGCAATGTGATAACATTTCAAATTAGAATT TTGTATCTTATCTTCTAATATAAATGAGTGAATATTGTGAGAAGTATAAAAAAATGCGAAAAAAATAAGTGTTCTTAGTT TTTGGGGGTTTGATTTCATTTGTTTCTAATTATTTTTATAATATTATTATTTTTTAAAAAATAATTTGTATTTTTCATGA ATTGTTTCGGTATAGTGCTTATGATAAAATACATAGTTAAGAAAACAGAAATTTAATGATTTATAAAAGCTATTTCTAGG ATGTTTTGTAAAAGAAAACTGTTGATATTAGTAAGAAAATTCATTTTGGGTGACACTATTTCATTTAGTTTTACAAAATT GTCCCTATTTTATAATCAAAATATATTTATGAGAAGTGTTTTTTTTATGTCATTGAATGCAACTTAATATGATGAAAAAG CAATTACTTGTTCATTCATATCCAAATTAAATGAATTAAAAGTTCCCTTTTGAAAATAAACAAAACTTTAACTTCTATTC ACAAACAAACATAATTCCAAAAACATTCTCACGCAACTTAATGACTTTTGTCATGGGCCATGGTTTATAAGTGTCATCAC GATCACTCACAGTGTCTCTCAAAGAGTCCCTCTCTGTATAACCTAAAAAAAGAGGCTCTCTGTATCATCTTTCATTTATT TTCCCCCCTTATTATTATTTTGGCATTATTAATCAAACATCACTTAATTCCACCCGTGAATGGTTTAATTCTGTTGTCGC CCACCTAATATATGCTTCCAGTTCCTACCCTTCCTTGGCCACAAGGAACTACACAACAACAAAGAGTCACGAGATGGATA TTATTGCCCTTTGCATCAATACAAAGTTCACCCAATTGGGCACTTATATATTTTTAAATTCAGTTCTTCACCAAAACTAT ATCAGTTGTCATTGGTGTACACTAACAACACTCAAGACACTGGCCGTTTGTGGAAATTTCTGTGGTTACAAATTTTAATT TTATTTATTTATGAACTTAACAGTTTGTAGTAGACAGAAACAGCCACAAACTAGTGGGTGTTAAAAATATGTAGTGTTCA CTGGTCATTTTTAAACTATATTGATAGATTATCATTAATTTTCTTAGTCTACGTGTTCACTCATGAGTGGAAGATCATTA ATTGGAGCAAAATATGCAAGAATCTTGGCATGAAAATATGAATGATTGTCATAGGATAATTCAATGATGTGTGTGATGCC TGAATTACCTTAAAAATTTGATACAAAGCCCTAAGGATGAGGTCATGTGAGTCATCTCATTAGAAAAGTAAGTTGATTAA AACAAACAAAAGAAAGTTTGTAGTTGGCAAAATTCACAAAATGGAAAGATAAGTTATGTTTCACTCAATTTAGAATGGCG GGTATGATTCACTACAAAAATTTACTAATCTTCCCATGATGCTTAACTTTATTGTTGCTTACTATTGTATTTTGCAGATT TGGTCTATTAACTACTACCTAACACACATGCAAAATCTTGTATACTATTGGTATTTCAGAAACTGCATGTCAGTTGGGAA AATCACACAGAAACATGTTACATGATAAACAGAATTGATGCTGAAGTCACAAGTTTCTGGAATGCTTTTGCTTATTTTCT TGAAAATATAAAATTCACTGATATAGGAAAGAAAATAATTCTATAAAATATTTCACAATAGCAACCAAATTTTCAGTCGC TAATAGTTTTAGTGACCAAATTAGCAACTGATTTTTTTTTAAATCAGCCCTAAATCAGTCACTATGCAGTGAATTTCTAG TATATGGTAAGTGAATTGAAGTATAAGAATAATAGAACCCACTCAATACATTTGGGACCACAAAAAATTGAACATTCTTA CTACAAAGAAAAATAATGGCCTTAGAGAACAAATAAACCCTGCAAGAGTTGCTGAACATCCAAAAAGGTTTTTTAAGAGC ATCCTACAGTTTCCTTCACACCCCACACTCTGACACTTTTAATCAACATGAAATTGACACGTGGCAACCTTATTATTTTG AAGATGGAATTTTTATATGGCCTGTTATCCTCTCATATTCGACCAATAAATAATTACTTAGTGTAATAAATGTCATGTCG ACATGTTTAATAACGAGTTTTGAAATTTCATTTTAAGTGATTTATAAGAAGATGAAACAGGACACTCTAAATTAGAGAGG GCATGACAAAGCTCCATTTTAAAAATTCATTACTTAGTGATCATATATATTTTGAGTATAAATAAGAGATGGTCCTTGCT AGGCCAATTTGCTCTGGATGTTATATTAAACCTTAGCCATTCTTCTTTCTTCTATGTCAATCCTCCATTTGTCTTTGAAA CTAGTATTTCTGAAGTTGGAGTTTTTGTCTATACACAGAACAGAATAGCATTTTGGGGTTCTGCATTGGCACATACATAT TTTTGGTGTATACTGAAACTCAACTTTGAAGTTTGAGTTCCTCATGGATCATCTCATTCATGGATTACTTATTCTCTGGA TTATTACTTTGACACTTTTCAACCACAATTTGGTAAATGTGGAAGGAAGATACCACCATCTTACCAACCAGAAGAATATA TCCCCTGCTCCTGATGACCCTCCTAATGATCCCTCACCCCCTTCAATTTCTCCTAGTTTTCCTTCTGACCCTTATCCAAA TGATCCCCAAGATTCCTCTTCAAATGGTATCTTTGATGTGAGATCCTTTGGGGCTGTTGGAGATGGTTCAGCTGATGACA CACCTGCATTCAGGGCAGCATGGAAAGCCGCTTGTGAAGTAGAGTCAGGGGTTGTTCTGGCTCCAGAGAATTACTGCTTT ATGATCACTTCAACTATTTTTTCAGGTCCATGCAAGCCAGGACTAGTGTTTCAAGTAAGAATTTTTAATTGAATTTCCAA GTTCATCATCACATTTCCTATGCTTTAGAGACTTTCTAATTTGCTTAAGAGAAATTATACTAATAATCTTTAACTTTTTT TTGTTGAGATACTTTAAAAAGAGAATGCTTGTTAATAAAAGAACACTTTGGAATGTATTATCAATCAAGAGCTGCTAATT TATATATACATGTGTTTGTGAGATAGTACTGACCATTTCATTTTACATGTGTTTCAATATTGGTTTTACTTAAATTAATC TTGATTTTTGACAATTATGTAAATTGAAGGCTTAATTACACTTTTTATCGCAATAGTTTTAACATATGTAATTTTGGTTC TTAAAGTTTAAATTTCTTCAATTAAGTCACTCTGCTTTTAAAATTAAACAAGTATAATACAAACATTAATAATGAAATGA TGTTTTTATGTGGATCACAATTTTTTACATGAATGTCATGTTAAGACGATTTATGTCATTTTTAACATTATAATTTGGGA TATATGTCAATTTTTTCCGTTAGTTATTAGATAATAAGTTAAAATTTTGACCGAATTTATTCAACTTTAAAAGTGAAAGG ATTTAATTGGAGCAATTGAAACTATAAATAGAAAATCACGCATTTATGAAAGTATAGGCAAAAAACAAAGTTGAATAATA AAAATCCATTGTTCCTATACAGATATGTGGGTGTGTGAGAATTTCACTAACAAGGTTCAAATGTGACCAGGTAGATAGCA CACTCATGACACCAGATGGACCAAATTCCTGGCCAGAAGCAGATAGCCTCAATCAGTGGCTTGTCTTTTATAAACTTGAC CAAATGACTTTTAATGGTACAGGAATCATAGAAGGCAATGGAGAAAAGTGGTGGGATCTCCCCTGCAAACCTCACAGGGT AATAATATTTTATAATGTCACCAATACAATGACCTAATATATGTTTGTATCGGCCTCTATTTCTTTGTAATCAATTCTGA CATCGAGAGGCTACTCACATAAGTTTTATTAATTATAAAAGAGTTTCCATACATGCGCCTAATCATTCACCTTTCCACAT TATTGCTTGCATTCATTTGATGTTGAATGAAACCCCACTAAATAAACTTGGCATTTTCAGGGTCCAGATGGAAAAACTTT ATCAAGACCATGTGTCAGTCCCACTGTGAGTAAACCATTCTTCAGAACTCAGCTCAAGCATTAACTGAACTTTTTATGTA TATCACTGTCTTACAGTTGTTTTTCCTTTTTGGTTATAGATGATAAGGTTCTTCATGAGCTCCAATTTGAAGGTGATTGG ACTGAAAATTCAAAACAGTCCTGAGTTCCACATGAAATTTGATGGCTGCCAAGGGGTAATGATTGATGATGTGTCCATTT CTTCACCAAAACTCAGCCCCAACACTGATGGAATCCATGTAGAAAATTCAAATGATGTTGGGATATATAACTCCATGATA AGCAATGGTAATGGCCAAAGAGTTACTGGTTTAGTACTTTGGTTCTATATGTTACTATTTCTTAATGTTTAGTTTCAAAT ATCATGCTTTGAACAGGTGATGATTGCATTTCAATTGGACCCGGGACCTCAAACGTGGACATAGCTGGTGTTACTTGTGG TCCTAGCCATGGGATTAGGTACAATGCATAAGCTTCTCTTCATTGATGATTAATAAAATTAAATACAAAGTGATGCAATT AACTTTTAATAATTTATAGTCAAATCAATGAAAAGAGAGTTTAAGTTTGAAGGTGCCTCCAACTCATTTCATAAAAGCAA AAAAAGAATGAAAAAGATGGAGTTCATCAATGCTATGAGAACAATTTTCATACCTTTAAATGATATATACTTGATTCTTT TTAAAGGTTTTGAGTTTAGGTCTTGAGTTATGTAAGAAAAAACTCGGCTAACAGAGCCCCACTCAAATGTGGATATTTCT GACTCAAACAAGATTGCCTAATGTGAAGGATAAACTAAAAAACAACTTCCATGATCTTCGTTAGTTTTTCTTTATCACGA GTCCCATGGCAACAAATTTTAACCAACAAGTGATTAAATCAAGTAATACATGTTTGATTCTCCATAGCCAATATCTCAAG TTCAAGTGTGGGGAGAAACCTCCGTTGGGAGAGCCATTCCCACTAGAGTACATGCATTCCCGACTCGAACTGGATTGCCT CATGTCATTAAATCACATAAAAAATTTCCATGATCTTCATTAACTTTAGTCCAATGGCAGAAAATTTTACCCAACTTGGT CAATTACATATATAACAAACCAATTGTGAAACATTTGCAGTACCATCTTTTCTACAATGCTAATTTTACCATGTCTCACT CACTAAGCTTAGCATATTGTTTTTACAGCATTGGAAGCCTTGGTGTGCACAATTCCCAGGCATGTGTCTCGAACTTAACT GTTCGAGACACCATAATAAGGGAATCAGACAATGGACTCAGAATTAAAACATGGCAAGGTGGGACAGGATCTGTTTCAGG TTTGAGATTTGAGAACGTCCAAATGGAGAATGTGGGAAACTGCATCATTGTAGACCAGTACTACTGCATGACAAAGGAAT GCCTGAACCAAACTTCAGCTGTTCATGTTAATGATATTTCCTACAGGAACATTAAGGGCACTTATGATGTGAGAACTGCA CCTATTCACTTTGCTTGCAGTGACTATGTTGCCTGCACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCTTATGAGGG AGAATTGCTTGATGACCCTTTTTGTTGGAATGCTTATGGGACTCAAGAGACCTTGACTATACCTCCTATTAATTGCTTAA GAGAAGGTGACCCTGAGGAAGTGGGTGATCTTTCTGCATATCAATGCAGTTAAGGATATATTACTCTAATAGCATGTCTG GATCGACTTTTCGCTCTATATATAGAATCGATTTTGAAGCTCAGAGACTACTCACAAAATCTTTTCATCAGAATTAATTT TGGTTTTATAATCAATTATAGAAAAATTACAAATCATACTGTAATATTTTTAACTACATTGATATGCAGAAAAGTACACT TCTAAACATGTTTGGAACATGTACTAAATTGGATGTACTTTTTTGCATATAAATGTAGTTGAAGATATTTCTCTTATAGC ATGTTTACAAATTCTTCTATAATTAATTCTAAAGTCAGAATCAATTCTTGAGAAAATGTTCTATAAGTAGCTTCTGGTGT AAAGAAAAAATAAGTTGATTCAAATGTACTATAAATTTGGTTGCTTTTAGATAGAAGATATATATCATATACTATATACA TATATTCAGCCTAGATAACCATTGTATGACTAGGTGGTTGTGGCTCTTTGTACCTCTCTTAGGATTTCGTCCCTATTTGG GTGTATTTCTTCTCCCATATTGTGAGATGCAGATTTTGGTCCCATATTTTGGACCTACACTGTAATAGCTTGGCTGAACA TTTTTATGTTATGTGGCTAAAATAGTATATATAGGCCTTTTTTCCCTAATATTTATTTTAGTTTCTATTATTTCAGTGTA AGTTTATTTCAGATTTCATTTTTATCCACATATATAGCATCTATTGGCAATCTCTGGAAACGAAGCTAACCCACTGATCT AGCTTCCCCTGCAGTTACAAAAAGAAAATTGATTTGATTAACTGAAGATGAAAAAAAGACAAATTGAAAGGAGGGTCAG
CDS sequence (LotjaGi4g1v0020100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATCTCATTCATGGATTACTTATTCTCTGGATTATTACTTTGACACTTTTCAACCACAATTTGGTAAATGTGGA AGGAAGATACCACCATCTTACCAACCAGAAGAATATATCCCCTGCTCCTGATGACCCTCCTAATGATCCCTCACCCCCTT CAATTTCTCCTAGTTTTCCTTCTGACCCTTATCCAAATGATCCCCAAGATTCCTCTTCAAATGGTATCTTTGATGTGAGA TCCTTTGGGGCTGTTGGAGATGGTTCAGCTGATGACACACCTGCATTCAGGGCAGCATGGAAAGCCGCTTGTGAAGTAGA GTCAGGGGTTGTTCTGGCTCCAGAGAATTACTGCTTTATGATCACTTCAACTATTTTTTCAGGTCCATGCAAGCCAGGAC TAGTGTTTCAAGTAGATAGCACACTCATGACACCAGATGGACCAAATTCCTGGCCAGAAGCAGATAGCCTCAATCAGTGG CTTGTCTTTTATAAACTTGACCAAATGACTTTTAATGGTACAGGAATCATAGAAGGCAATGGAGAAAAGTGGTGGGATCT CCCCTGCAAACCTCACAGGGGTCCAGATGGAAAAACTTTATCAAGACCATGTGTCAGTCCCACTATGATAAGGTTCTTCA TGAGCTCCAATTTGAAGGTGATTGGACTGAAAATTCAAAACAGTCCTGAGTTCCACATGAAATTTGATGGCTGCCAAGGG GTAATGATTGATGATGTGTCCATTTCTTCACCAAAACTCAGCCCCAACACTGATGGAATCCATGTAGAAAATTCAAATGA TGTTGGGATATATAACTCCATGATAAGCAATGGTGATGATTGCATTTCAATTGGACCCGGGACCTCAAACGTGGACATAG CTGGTGTTACTTGTGGTCCTAGCCATGGGATTAGCATTGGAAGCCTTGGTGTGCACAATTCCCAGGCATGTGTCTCGAAC TTAACTGTTCGAGACACCATAATAAGGGAATCAGACAATGGACTCAGAATTAAAACATGGCAAGGTGGGACAGGATCTGT TTCAGGTTTGAGATTTGAGAACGTCCAAATGGAGAATGTGGGAAACTGCATCATTGTAGACCAGTACTACTGCATGACAA AGGAATGCCTGAACCAAACTTCAGCTGTTCATGTTAATGATATTTCCTACAGGAACATTAAGGGCACTTATGATGTGAGA ACTGCACCTATTCACTTTGCTTGCAGTGACTATGTTGCCTGCACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCTTA TGAGGGAGAATTGCTTGATGACCCTTTTTGTTGGAATGCTTATGGGACTCAAGAGACCTTGACTATACCTCCTATTAATT GCTTAAGAGAAGGTGACCCTGAGGAAGTGGGTGATCTTTCTGCATATCAATGCAGTTAA
Protein sequence (LotjaGi4g1v0020100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHLIHGLLILWIITLTLFNHNLVNVEGRYHHLTNQKNISPAPDDPPNDPSPPSISPSFPSDPYPNDPQDSSSNGIFDVR SFGAVGDGSADDTPAFRAAWKAACEVESGVVLAPENYCFMITSTIFSGPCKPGLVFQVDSTLMTPDGPNSWPEADSLNQW LVFYKLDQMTFNGTGIIEGNGEKWWDLPCKPHRGPDGKTLSRPCVSPTMIRFFMSSNLKVIGLKIQNSPEFHMKFDGCQG VMIDDVSISSPKLSPNTDGIHVENSNDVGIYNSMISNGDDCISIGPGTSNVDIAGVTCGPSHGISIGSLGVHNSQACVSN LTVRDTIIRESDNGLRIKTWQGGTGSVSGLRFENVQMENVGNCIIVDQYYCMTKECLNQTSAVHVNDISYRNIKGTYDVR TAPIHFACSDYVACTNITLSEVELLPYEGELLDDPFCWNAYGTQETLTIPPINCLREGDPEEVGDLSAYQCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 6 | 463 | 458 | 7.5E-260 | – | |
| PANTHER | 6 | 463 | 458 | 7.5E-260 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 26 | 7 | - | – | |
| Phobius | 27 | 472 | 446 | - | – | |
| MobiDBLite | 35 | 72 | 38 | - | – | |
| MobiDBLite | 43 | 64 | 22 | - | – | |
| Gene3D | 66 | 458 | 393 | 8.3E-116 | ||
| SUPERFAMILY | 74 | 467 | 394 | 1.18E-122 | ||
| Pfam | 119 | 424 | 306 | 1.9E-84 | ||
| SMART | 238 | 264 | 27 | 480.0 | ||
| SMART | 265 | 286 | 22 | 1900.0 | ||
| ProSitePatterns | 295 | 308 | 14 | - | ||
| SMART | 318 | 339 | 22 | 73.0 | ||
| SMART | 347 | 368 | 22 | 510.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0020100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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