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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0024300 |
Transcript ID | LotjaGi4g1v0024300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G29950.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144; TrEMBL-Plants: tr|T2DNS4|T2DNS4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0024300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2967353..2971346) extracted from Lotus japonicus Gifu genome v1.2.
AAATCTTGAAAGAGAATGCTCCAAGTCTCCACACCCCCCTCTTCACCAAAAACCTCTGCATCTTCATCACAACCCTTCCC TGATTCATCTTCAACTTCAACTTCAACTTCGTTTCCCATCAAGGTTCAGGTTTCCCTCTGTTACTGTGAATTGTTTTCCC TCAATTTCTCCCATTAAATTTGTTAATTTTGCAGAATTTTTGCTCATGCAGTGATTCTAGTTTGAAGATCCATCTCTTAA AGTGTATATTACTCTTTTTCTTATACAAAAAATACATACATATAGTGAATTTGGTTACACTGATAGCTAGGGTTTTATTT AGAAATGGGTTTGCTGATTTGGGAGTATGTTAAGTTTGATGCAAAATTTGGAACTTTACCATGTAGTTAGCTAAAAAATC TGATTTAAGTTAATGGGTATGAAATTTGAATGATGGATTCTGTGTTTGAGGTTAAATTTTGGATTTTTATGGTATAGTTC TTTGTTATGGATGATTGCTCTTGCATTTAAATAGAAGTCTTACTTTGATACTTTCAGGTTGAGTTTTGGGTTTGTTACAT CTGAAATTCTGGAGTTCAGCTAAATCAAGATGCCGTGGGTTTCCTTGTTTGTGGATCATAAGAGGAATTGTGTTCGCTTG GTGGTGTTTTTTCGCGTGATTCTGTAATTGTATTAGCTCAAGTGAGTGAGTTTGTCCTGCTAATCTTCCATGATTATATA GTTATATTTATAAAAAAATTTGTCACATTTGAAGTTCTAATGTAAATAATGTGTTTATAGCTTTTGTTTTTAATTTTTAA TTCTTATTGCTTGCTTTGGAAGGCAGAAAATTGGAGTGAGTTCAATTATTTATGATTCATGGACAACATTTTATCGCTGC TAACTATGATTTATGATTGCTGCACATATGGATCAATGAACTGAGCACAGCTGTGTTAGTTAATACTCTATGAACATTTT ATAGAACCTTGTATGGCTTAGGCTACGTTTGGTAGAACATGGAAGGGGATATTTTACTCTGTGGGAATAAAGGACTTTCA AGTTTGTGTTACTCTTCTTATGCAGCATATTGCTGTGGCATTAACTCTGATGATTTTGTACCATTTCTTGCTACTGCAGG TGAAGTCCCATTAGGTTATAAAGGGATCCTTTGATTTGTTTTCTTTTCCTTTCATTACCAAAGCTGCTGGGAGGGTTGAT AATGTACTTTGCCACAACGGCGAAGAGACAACAGGCCTTGAAGGAAGTTGGGCATATTAAAATGAGTGTTGGAGTCATTG CTTATAGTCGATTGATGTTAGTTTGCCAGGTAAAAAATTTCTTCTTTCCTTTTTCTGGGCTGCAATAGAGAAGGATTTAG GATTTGAACATCACATGGATTTTTATGTCTTTCCTCCAATGTTGCCTAGAAGATATTTGAACTTTTATAAAATTAGCATA TACCTTAAACATTGAAGGCTGAGGTCTATTATCTTGTTATGGCTAAAAGTATTGAAGGCTGAGGTCTATTATCTTGTTAT GGCTATTGGCTTTACAAAGCAACATGCTGTGAAGTATATTGACAACTTTTTGGATGTACATACTCTTTGAATAGACGGTG GTTTTCTCTGGTTATATAAATCGTGTCTCGTAATTTGATTGTATTGAACATCATTGAATTCACTAATTCTCTCCATGACT GCAAAACCACTCTTCTTTTTTGCTGTACTATTACTAATCTTTATACCACACTACTTTCTTCTGCAGGCTGAGTATTTTCG TCAGTTGCTTAAACCTGTTACGTAGTTTAGCAGGGAGGGATTGCCTTGGACACCATCGTTTGAAGGCTGCAGAAGTTGTC ATTACTTGTTAGGTGGAAATCGAGATCACCTTAGTACCTGCTGTTTAATTTTTAGGTTCCTTTAGATTCTTCCATCCAGC TTTAGTACAGGTTAATTTCCAGTTGCATAGGCCAAATCATTGCTTGCTTGTATCTTTCTGAGAGTGCACAGGTATTATAA TGCCGACTCGTGAATATTTTCTCCCAGAAAAGGCGGTACTTCCTTTGGCAGGTGTTGCGATTGATACTTGCATACATGCT CCACTTGCTTCTGCCTTTGATGCAGTTTTACCTCCAGGTGTGAGGCAGATAACGCCCTCTGAAAGATTTAAATTGCAGCC TTCTGTGATTTGCCCTAAGAATTTCGTTATCTGTGATCAAACACGTCAGCAGGGCAGGATTTTGGTCCATCCTTCGATGA CCTCCAAATTTAACAGTCATGGCTTAATGGTTCATGCTACTTGCACTCAAGATCTTGAAAAGAATAAAATTAATCAAATG GAAAGGGAATTTTCATCTTCTTTTGAAGAGGATCCTGATGACATTGATGCATTGTTGAGCCTCGAAGTGGATGAGCTTGA AGACTCGGATGAGGAAGAAGTTAGCACAGCAAGGACTCGTGAAATTTGTGAAAGTACATCTGATACTTGCTCTAGTTATT GCTCAAAATCAAGGAAGAAGAGGTTGTCATCATCTTCTGTACAGAAGTCTTCTGGGACCAGGGGTTACTGCAACAGTGAA ACAAACCACATGGAGATGAAAAATATGGTGAGGATGCTGAGAAGGATTGTGCCTGGTGGAGGTAGCCAAGTGGATGCTGT TTCTGTTCTAGATGAAGCTGTTAAATACCTCAAATCTCTCAAGGCTGAAGTGGAGCAATTCGGAGTTGGACCATGAAAAT AAAAATTGGACATTCATTTGCTGCAGCAACAGTTGGACTCGATTACCGACTATTTGTTATCCTATATGAATTAGCACCCT TTTCAGACTCGGATATGGTCCTGCCCAGATTCCCTTTTATGAGAAGAGGCCTTGCAAGTAATAAATTGCAGCTGTCATTT TACTTATTCTGGTTATGTAAAAAAAAATACCTTCATAATTGTACTGTAAGTTTGTATGCCATGTGATTCAAATCCAACTT TTGCATGGGATTTTATGTTCGTTTGAAGTCCTTTCTTGTAATGTTGACTTAACAAGTGTTTCTAGCTAGCTGTGTTGAGC AAGGTATTTGGATATTTGATGGCAACGGTCTAAATGGATGTTAACGCGAATCTTCCCACTAATCCATAGAAGAGTCCTGC TTGGAGTGAGAACTGCTTGACGGGTGCGCAACTTACTTTTCATATTACATAGATCCTAGCCTTGAACACTGATCCCTATT GCTTGAAGTTCGGTCCCTACTGCTGAGATACGGAAACTCGTTGATGCGCTTCCTGCCTATGGAACTACGAGAATTACAGA TTGACTCCTCCCGCTCAAGTGGGAGAGCCGTGTTATGGGTGACCTTATTGCACGGTTCAGAGAGCACTTGTGTATGTGAT GCAAGTGACCCATTCGGTGACTTTCGCGGTCGCCCTCACTGAACCGACTTGAATCTGAACTACGATTCAGATCGAGTCTT ACCATATGGATATTTGTTGGCACCAGTTTAAATGGATGTTAACACATATTTCAATATGTAAAGTGAATTGAACTCTTCTT TACTGATGTCAATAGTACACTGTAGTGGTAAAGTAGCGCAGAGCGGCCACCGTTCGCGATGGAAGGGGTTGTGGTAGAGC TTATCATCGTGGCTAGTCATGTTCCATCGTGGTCTGAATTGCTGCCATTGCAGTGCAATTCTATCTCTACTCTTATTAAT TGAGATTCTATCTCTACTCTTATGAAATGAGTTGAAGCACATATCCAAACACTGTTTACCAAATGGTTTTTTTTTTCTTC TAGGAAGAACAGAGTTTTTGTTCATATTTAATGTAACAAGGTTCGAGCTATTTTCTGCTGTCCTTTATCGAACTGGACAA TTGTTAGTGTGAAAGATTAGACTAGTTAGTTCATTTTCCCTTTCTATTATAGAATTAGTTAGAGTTAGTTTCAGTTTCTG TTGTCCTTTCTAATTTTAGTTACCTTTGTAATCAATCCTCACCTACTTATATATAAGTAGGATAGTACATTCTT
CDS sequence (LotjaGi4g1v0024300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGACTCGTGAATATTTTCTCCCAGAAAAGGCGGTACTTCCTTTGGCAGGTGTTGCGATTGATACTTGCATACATGC TCCACTTGCTTCTGCCTTTGATGCAGTTTTACCTCCAGGTGTGAGGCAGATAACGCCCTCTGAAAGATTTAAATTGCAGC CTTCTGTGATTTGCCCTAAGAATTTCGTTATCTGTGATCAAACACGTCAGCAGGGCAGGATTTTGGTCCATCCTTCGATG ACCTCCAAATTTAACAGTCATGGCTTAATGGTTCATGCTACTTGCACTCAAGATCTTGAAAAGAATAAAATTAATCAAAT GGAAAGGGAATTTTCATCTTCTTTTGAAGAGGATCCTGATGACATTGATGCATTGTTGAGCCTCGAAGTGGATGAGCTTG AAGACTCGGATGAGGAAGAAGTTAGCACAGCAAGGACTCGTGAAATTTGTGAAAGTACATCTGATACTTGCTCTAGTTAT TGCTCAAAATCAAGGAAGAAGAGGTTGTCATCATCTTCTGTACAGAAGTCTTCTGGGACCAGGGGTTACTGCAACAGTGA AACAAACCACATGGAGATGAAAAATATGGTGAGGATGCTGAGAAGGATTGTGCCTGGTGGAGGTAGCCAAGTGGATGCTG TTTCTGTTCTAGATGAAGCTGTTAAATACCTCAAATCTCTCAAGGCTGAAGTGGAGCAATTCGGAGTTGGACCATGA
Protein sequence (LotjaGi4g1v0024300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTREYFLPEKAVLPLAGVAIDTCIHAPLASAFDAVLPPGVRQITPSERFKLQPSVICPKNFVICDQTRQQGRILVHPSM TSKFNSHGLMVHATCTQDLEKNKINQMEREFSSSFEEDPDDIDALLSLEVDELEDSDEEEVSTARTREICESTSDTCSSY CSKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKNMVRMLRRIVPGGGSQVDAVSVLDEAVKYLKSLKAEVEQFGVGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 237 | 237 | 2.3E-76 | – | |
PANTHER | 1 | 237 | 237 | 2.3E-76 | ||
CDD | 189 | 232 | 44 | 2.57352E-4 | ||
Gene3D | 191 | 235 | 45 | 2.8E-5 | ||
SUPERFAMILY | 192 | 234 | 43 | 3.53E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0024300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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