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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0028300 |
| Transcript ID | LotjaGi4g1v0028300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein; TAIR: AT3G12145.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|P58822|PGIP2_PHAVU Polygalacturonase inhibitor 2; TrEMBL-Plants: tr|B9W4T6|B9W4T6_PHAAT Putative polygalacturonase-inhibiting protein; Found in the gene: LotjaGi4g1v0028300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3524743..3530065) extracted from Lotus japonicus Gifu genome v1.2.
CCAGTTGATCATTCTTACGAATTTCATGACATTAATTAACATTACGTGGGTTGACTGCAAATAGTAAAACATACCGACAA TGAGCTGTCACAACAGTCTCAGCACCCATCAACATAGACGATTCCCACATCTTGCTGCATCTATTAGAAAACTGATTCAT TTTGATCTATTAGAAACTCTCAAACAAAGCCATCATCAACTTTTTCCTAGATGAGTTTTGATATACTTATATCTAAAGAT TGAGGTGTATGTGGTGTAGTTTAGTTCCTATCTTTTTTAACAACCTTCATTTTTCAACACAAACCGGCTATATAAACCGA ACACATCCCCAAATCAAATCCAAGCACAAACATGGCAGCAAAGTTCTTCTCCTCAGCCACCCCAGTTCTACTACTACTAC TCCTCCTAACCGTTACATGTTTCTTCACTCCATCACTCTCAGAAAAATGCAACCCACAAGACAAGACCGCCCTCCTCCAA TTCAAGAAAGAGCTCGGCAATCCGGCCAAGCTCTCCTCTTGGAATGCCACCACTGACTGTTGTGACCCTGCCTGGGAAGG CGTCTCATGTGACACAGACACCAAAACCTACCGTGTCAACGACCTCGACCTCTCCGGCTTCTCCCTCCCTAGCCCCCACC CCATCCCTCCCTCTGTGGGCGACCTCCCTCACCTCAACATCCTCTCCCTCCGCAACATCCCCAACCTCATCGGCCCCATC CCTTCAGCCATCACAAAACTCACCTCACTCCACTACATATACATCAGCCAGACCGGCATCTCCGGCAACATCCCTGACTT CCTCTCCCAGATCAAAACCCTCGTCACATTCGACTTCTCCTACAACAAACTCACCGGCCCTTTACCTTCCTCCATCTCCA CCCTCCCCAACCTCGTTGGAATCACTGCCAACGACAACAAGCTCTCCGGCGCCATCCCGGACTCCTACGGGTCGTTCTCT AACTTGTTCACCTCGTTGACGCTCAACCGCAACCAGCTCTCAGGGAAAATCCCAGCTTCTTTGTCAAAGCTGAATCTGGC ATTTGTTGACCTATCCATGAACATGCTGGAGGGTGATGCGTCGGTGTTTTTTGGGTCAAAGAAAAATACCCAGAAGATCA TACTTGCTAGAAACTCTTTGGCTTTTGATTTGGGGAAAGTTGGGCTGTCGAGTAACTTGAACACGATTGATCTTAGGAAC AATCGTGTCTATGGGAAGCTACCACAGGAATTAACTGGGCTCAAGTTTTTGAAGAAGTTGAACGTGAGCTACAATAGTCT TTGTGGTCAGATTCCACAGGGTGGTAACTTGCAGAGGTTTGATGTGTATTCCTATGCTCATAACAAGTGTTTGTGCGGTT CTCCTCTTCCTGCCTGCAAGACTTGATGATCTCTGAGCGAATTGAAATGGATCATAATGGATAATGTCTTTTGTCCATGT AGCTACTTAAGTGGTGTAATAAATGATTCATGTAGTACGAACTACATATGTTTTAATGTATGTTCCGAATGTCAGTATTG TTTGTTCATTGTGCGGTTCTCCACTTCCCACGAGTTCCACGGGGTAACAAATGTGATATGACATATGTTTTTAATCTCAA TTATGTTCCAATAGCATGGGATGGAATTATATAAAGGTATGAGATTTTAATGGTTTTATAAATTCTTACGTACCTACTCT CATTTAATATTAGTATAATTTAAGCAAGTGGGTTGAGGTTTGAATTTCAGTACTTATGAATGGAAAAATTCATTGGTCAA TCATCTACTGTTTAGTTCGCTGATAGTGAGAAGATGGAATAATCTCACCGATATCGACTTAAAGATATTTACAATGTTGG TTAAGGAAAAAAATATGAGTTTAATTTAAAATACAATGTTCTTTAAATACACTATTATAGTTTAATTATTCATTCCATCA CCAAATATCATTATCTAAAACATATTAACACTTAGAATTTATTTGGTAGGTTGTATTAGATATAAGTGTAAGTTTATACG ATACATTATATATATGAGTTTATCCATTATATGGTGCTAACGTTAAGACTGATAAAATTGTGATGTAGCTAGCTACTTGA ATTCAATTGTCATCACCATCATCGCCGCTACCACCACCATTATCATCTCCACCATTGTCACCATCATTGTTGTCTCGTCA TCGCCACAATCACACCCCCACCACCACGATCATCACCACCATAACCTACCTTCGCCTCGCCATCACCACCCTCAACTACA ACGGCCACCATTACTACCGCCGCCTCTAGAACCACAACCCACTGCCACCACCACCAGTGTCACCCTCACCCTCCACCACC GCAACCACCCTCTATCGCCACGACCCTTCACTATCATTAGTGTTGTCGCCGCCATAACCACAACCCTCCATCGTCGCAAC CACTACCCCCACCACCATCACCATCCTCCACCACGGCTACTGCCCACGTAAAAATCCTAGTCGGATGAAAGTGTACACAT GTAATGTTTAATATCACTTTTAGTCTCTCAAATTCTCTTTAATATTTTTTGGCCCTTCTCTTCCACCTTCCTTTTCCTCT TTCCCCATGTCTTTTCCAGCCACCACACAACCCCCCACCACCTTCCCCAGTGATGCCTTCTCCCCTTTCCGCCACATCTT TCCTCACCTTCCCCGCACCTCACCCAAACCTTCCCCCACCTACCAATTTCCAAATTTTGTTCCTCCTGATCTGATTAAAG TTTTTCGTTTGAAAAAAAGAAAGAACAAAAACCTATGTGGAATTGTATGTTGGAGCAATTTGACCCTTGTGGTTCAGAAG CTTCATCTACTAGTTGGTGATAAATGGCTCGATGCTTACACGAAACTAAGTCACCCCGGTGGCTCCGCCCCTGGGGAAGC ATGTCATGTCCTCAAGTCTTCATTTCAGGCTTTGAAAGCTACTACACTGCTGCATCGATAAAACATCACTTCCTCACTCG ATTCTAAACCAACAAATTAAATCACCCCACACCTCTCTCGCCAGGTCTCTACAATCAAACTTTGATGTTTATCTCCATTA ATTCAAAGTTACATGCATGCATGTGGCATAACCAATTTACTAACTTTCAAGTGAGAACACTTCTTCTAATGAATCTCAAG CCTAAGCAGTAACCAATCTCTTGATTTGAAATTTAGCCTAATTGGTTGATATCGTGGCCGAATACTTGCCAACAATTGAG TCTTGTTGTATCATTGAACACTGAAATTCGATAATAATGGTTGTCAACGTATACTTGTACCAGTTCATCATTGTCACGTA TTCATGACATTAATTGACATTGCCTGTGTTGACTGCAATGATAGCAAATTACAAACTACAAAGTACTCCCTCCGGTCCTA TTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATTTGTCTTGAA TCAAAATAAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGAGAAAGAGAGAGAATAATTAATGAGACACATT TTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAAATAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAA GAACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTACAAACAATGAGCCGTCACTACATATCCT CTTTAACAATGATTTGTTCATACTTCCTTTTTTTTCAATCTCATCTCCGTTCGCTTTTTCTTTTGATCTCTCATTCTCTC TTCTTTTTCAATTATATTATTTATCATATCTCTCAATTCACTTTTTTTTTTTTTCTATATCTCTTCATTAGATGGAAATG AATTAAGAATATAAGTCATTTTCTTAAATCTATCATGCTGCTCTTACTAGTAACTATATAAACCCAGCCCAATCTCATCC TTTTTTCCTCACCCAAGATTATAAATCATATCAAATCCAAATCAAGCACAACATGGCAACCAAGCACTCAGCCACCCCAT TTCTAATGCTACTCCTAACCATTACATGTTTCTTCCCTCTATCACTTTCAGAAAAATGCAAACCACGAGAAAAGACCGCC CTTCTCCAATTCAAGAAAGAGCTCGGCAACCCAACCGAGCTTTCATCGTGGAACACCACCACCGACTGTTGCGACCCCGC CTGGGAAGGCGTCACCTGCGACGCCTACAACCAAACTTACCGCGTCATCATCCTCGACCTCTACAACCTCAACCTCCCCA ACCCCCACCCCATTCCTGCCTCTGTGGCCAACCTCCCTCACCTCAACATCCTCTCCCTCCGCAACATCCCCAACCTTATC GGCCCAATCCCGCCGGCCATCACAAAACTCACCGAGCTCAACTACCTCACCGTCAGCCACACCAGCATCTTCAGCCACAT CCCCGACTTCCTCTCCCAGATCACAACCCTTGTCACCTTCGACTTCTCCTACAACAACCTCACCGGCCCTTTACCTCCTT CCATCTCCACCCTCCCCAACTTCGTTGGAATCACCGCCAACGACAACAAGCTCTCCGGAGCCATCCCATACTCCTATGGC TCGTTCTCTAACTTGTTCACCTCGTTGACGCTCAATCACAACCAGCTCTCCGGGAAAATCCCAGCTTCTTTGTCGAAGCT GAACCTTGCCTTCGTGGATTTATCCATGAACATGCTAGAGGGTGATGCCTCAGTATTTTTTGGATCAGAGAAAAATACCC AGAAGATTATACTTGCTAGAAACTCGCTGGCTTTTGATTTGGGGAAAGTTGGGTTGTCGAGTAACTTGAACACGATAGAT CTTAGGAACAATCGTGTCTATGGGACGCTACCACAGGAATTAACTGGGCTCAAGTTTTTAAAGAAGTTGAACGTGAGCTA CAATAGTCTTTGTGGTCAGATTCCACAGGGTGGCAACTTGCAGAGGTTTGATGTGTATTCCTATGCTCATAACAAGTGCT TGTGCGGTTCTCCTCTTCCTGCCTGCAAGACTTGATGATCTCTGAGCGAATTGAAATGGATCATGATGGATAATGTATTT GTCCATGGAGCTACTTAAGGGGTGTAATAAATGATTCATGTAGTACGACCTATATATGTTTTCATGTCGGTGTTGTTTGT TCATTTTGTGGTTCTCTCATTCCCACGAGTTCCACGGCAACAAATGTAATCTGACATATGTTTTTTTATCTCAGTTGTGT TCCAATAGGACGCATGGAATTTTACTAAGTTGTGAGATTTTAATGGTTTTATAAATTCTCACATATATCCTCTCATTGAA AATTAGTACCCGCAAGTGAGTTAAAGTAATGGCTCAACCCTTC
CDS sequence (LotjaGi4g1v0028300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAAAGTTCTTCTCCTCAGCCACCCCAGTTCTACTACTACTACTCCTCCTAACCGTTACATGTTTCTTCACTCC ATCACTCTCAGAAAAATGCAACCCACAAGACAAGACCGCCCTCCTCCAATTCAAGAAAGAGCTCGGCAATCCGGCCAAGC TCTCCTCTTGGAATGCCACCACTGACTGTTGTGACCCTGCCTGGGAAGGCGTCTCATGTGACACAGACACCAAAACCTAC CGTGTCAACGACCTCGACCTCTCCGGCTTCTCCCTCCCTAGCCCCCACCCCATCCCTCCCTCTGTGGGCGACCTCCCTCA CCTCAACATCCTCTCCCTCCGCAACATCCCCAACCTCATCGGCCCCATCCCTTCAGCCATCACAAAACTCACCTCACTCC ACTACATATACATCAGCCAGACCGGCATCTCCGGCAACATCCCTGACTTCCTCTCCCAGATCAAAACCCTCGTCACATTC GACTTCTCCTACAACAAACTCACCGGCCCTTTACCTTCCTCCATCTCCACCCTCCCCAACCTCGTTGGAATCACTGCCAA CGACAACAAGCTCTCCGGCGCCATCCCGGACTCCTACGGGTCGTTCTCTAACTTGTTCACCTCGTTGACGCTCAACCGCA ACCAGCTCTCAGGGAAAATCCCAGCTTCTTTGTCAAAGCTGAATCTGGCATTTGTTGACCTATCCATGAACATGCTGGAG GGTGATGCGTCGGTGTTTTTTGGGTCAAAGAAAAATACCCAGAAGATCATACTTGCTAGAAACTCTTTGGCTTTTGATTT GGGGAAAGTTGGGCTGTCGAGTAACTTGAACACGATTGATCTTAGGAACAATCGTGTCTATGGGAAGCTACCACAGGAAT TAACTGGGCTCAAGTTTTTGAAGAAGTTGAACGTGAGCTACAATAGTCTTTGTGGTCAGATTCCACAGGGTGGTAACTTG CAGAGGTTTGATGTGTATTCCTATGCTCATAACAAGTGCTTGTGCGGTTCTCCTCTTCCTGCCTGCAAGACTTGA
Protein sequence (LotjaGi4g1v0028300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAKFFSSATPVLLLLLLLTVTCFFTPSLSEKCNPQDKTALLQFKKELGNPAKLSSWNATTDCCDPAWEGVSCDTDTKTY RVNDLDLSGFSLPSPHPIPPSVGDLPHLNILSLRNIPNLIGPIPSAITKLTSLHYIYISQTGISGNIPDFLSQIKTLVTF DFSYNKLTGPLPSSISTLPNLVGITANDNKLSGAIPDSYGSFSNLFTSLTLNRNQLSGKIPASLSKLNLAFVDLSMNMLE GDASVFFGSKKNTQKIILARNSLAFDLGKVGLSSNLNTIDLRNNRVYGKLPQELTGLKFLKKLNVSYNSLCGQIPQGGNL QRFDVYSYAHNKCLCGSPLPACKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 7 | 176 | 170 | 1.0E-75 | – | |
| PANTHER | 7 | 176 | 170 | 1.0E-75 | – | |
| Phobius | 12 | 25 | 14 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 344 | 314 | - | – | |
| SUPERFAMILY | 32 | 341 | 310 | 6.33E-64 | – | |
| Gene3D | 32 | 343 | 312 | 2.0E-96 | ||
| Pfam | 35 | 74 | 40 | 8.1E-13 | ||
| PANTHER | 156 | 343 | 188 | 1.0E-75 | – | |
| PANTHER | 156 | 343 | 188 | 1.0E-75 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0028300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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