Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0029100 |
| Transcript ID | LotjaGi4g1v0029100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3603427..3608042) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCCAAGAAAATCAGCCCAGAGCTAGCATGTTGGCTGATTACAACTGATGAGAACAACTAGACTAATAAAAGAAAAG AAAAGTACATGGGGACCTTGAATTTGAGTTAAAATCGTTTTTCAATATTTCACTCGGCTGAAAAGCAAACCTCATCTTCT TTAATTCATGAACAAAATCGAGAGCTTCAACATCTACCACCTGAACCGATTCAGCCCTGGAACATAGCTCCCTCCCACCT CTACGACCCTGAATCAATTCAGCCAACGAACCCCCGAACTCATACCCTTCCTAGGCTCATCAGCAAAGCAAATTAGGTAG GCTAAAACGAAAGACATTGGGTAAGGGCATTTTTGTCATTCTACATCTACGATCGTGGCCGTTCAATTATTTCTCACTTC TATATCAATCAATGGTGCAGATTGCAGAATCATAGTTCATTGGTGTTCCTTATTTTCCATGATACACTGAAACCACCATC ATCGTCTTTCTCTGTATCCTCAACTTCTCTTCATCTTCTCACATTTTTCACCTCTCTGTTGCAATCACAGTGGTTACAGA TCTCAATCGGAAACCCTAATTTCACGATCTCAACCACCACCACCACCACCATGTCGCTCAATCTCCGTCTGAAGCAAACA GGTAATCAATCGATTCATTCACACGATCAATTCAATTTGATTCATTCACTGATTTCACTGATTCTTCGTTCAATTTGTAT CAGAATGCATTGCTCGAATGCTAAATCTGAATCAACCTCTGAATTCATCTGGAACTGCAAACGAAGAAGCCTACAAGATC CTCATCTACGACAAGTTCTGCCAGAACATCCTCTCACCATTGATCCATGTCAAGGATCTTCGCAAACACGGTGTCACACT CTACTTCCTCATCGACAAGGATCGCAACCCCGTTCACGACGTCCCCGCCGTGTACTTCGTTCAACCCACCCACCACAACC TCCAGAGGATCATCGCCGACGCATCTCGCTCGCTCTACCACACCTTCAACCTTAACTTCTCCACCTCAATTCCTCGCCCA CTCCTTGAAGATCTCGCATCTGGGACTCTGGCTTCTGATTCTATACAGAGAATTTCCAGGGTTCATGATCAGTATCTTGA GTTTGTTACTCTTGAGGATGACCTGTTCTCGCTTGCCCACAAGCCTTGTTTTCTTCAGCTCAATGACCCTTCTGCTGGGG ATCGTGAAATTGAGGAAATTGTGGAGAAGATTGTATCTGGGTTGTTTTGTGTTCTGGCTACGCTTGCTGTTGTGCCGGTT ATCCGGTGCCCTCGTGGGGGGCCTGCTGAGATGGTTGCGACTGCGTTGGATCAGCGGATCCGTGATCATTTGTTGTCGAA GAATAATTTGTTTACTGAGGGTGGGAACTTTGTCAGCTCGTTTCAGAGGCCGGTTTTGTGTATCTTTGACAGGAATTTCG AGCTTCCGGTGGCGATTCAGCATGATTTCCGGTACCGGCCTTTGGTGCATGATGTTCTCGGGTTGAAGCTGAATAGGTTG AGTGTTCAGGGGGAGAAAGGTGGGATGAGGTCGTATGAGTTGGATAGTTCGGATTCGTTTTGGCTTTCGAATGGATCTTT GGAGTTCCCTGAGGTTGCGGTGGAGATTGAGACGCAGCTGAATAAGTATAAGAAGGATGTGGATGAGGTGAATAAGAGGA CTGGGGGAACCCATGGTGCGGAGTTTGAGGGGACGGATTTGATTGGTAACACGAAGCATTTGATGAATGCTGTGAACTCG CTGCCTGAGTTGACTGAGAGGAAGCAAGTGATTGATAAGCACACTAACATTGCTACTGTTTTGTTGGGTGAGATCAAGGA GAGGTCGCTTGATTCTTATGCGAAGAAGGAGAATGATATGATGGTTAGAGGGGGAATTGAGCGGAATGAGCTTCTTGGTG TACTCAGAGGGAAGGGAACAAAGATAGATAAGCTGCGTTTTGCCATCATGTATCTTATTTCCTCAGAAAGCATTAATCCG TCAGAAGTGGAAGCTGTGGAAACGGCACTGAGAGAGTGTGAGGTCGATACTGCCGCTTTCCAGTATGTGAAAAAGATTAA GTCTTTGAATGTTTCATTGGCAGCGGCGAATTCTGCAAGTAGAAGTAATATTGTTGACTGGGCTGAAAAGCTCTATGGAC AGTCAATAAGTGCAGTGACAGCTGGTGTCAAAAATCTTTTGTCTAGTGACCGGCAGCTAGCATTGGCTAGGACTGTTGAG GCCTTGATTGAAGGGAGGCCAAATCCTGAAACGGATGCATACCCAGCATTTGATCCTCGTGCTCCCAAGTCTGGTTCAGG AGCAAGTAGCAGCCATTTGAAAGGGCCATTTAAGGAAGCAATTGTATTCATGATTGGTGGCGGTAATTATGTTGAATATT GCAGTCTGCAAGAGCTTGCCCAAAATCAACAGCCTGCCAAGCATATCATATATGGAACAACAGAAATGCTAACTGGAGTG GACTTTGTAGAGCAGCTTACATTGTTGGGACAGAAGATGGGTTTGGGTAATGTTGGCTCAACCTCAACTCAGTAGTTTCT TTGGATCAGGTTTGTCATTCTTACTCTGGCAGGTTTTTTTATTTTTTTTTGCATGGTTGCCTTGAATTTGTGTGTGCTTG ATTATTTTTTATCATCACAATTTGTTGTGGGTTTTTTATTGCATACATGTGCTTCTCATTCGCTAATTCATGCATAGCTG ATAAGCCCGCTCTAAAATGAAATACTGCATCTTTATACCTGACTCTGAAACAACTGAGCTATTGAGCTCATGTAATCGTG TCGTGCTCAGCTGCGGTTTTAGGGTTGTAGCTCAAATTTGACGCGTCTTCTGTGTTTTTGTAATTGAACTCTTGCTTTAA AAAGAGCTTTTGAAAATGATTATTGCAGTGCTTGATGAACTGTTGTGTGCAATTTGAAATGATTTAATGCAGATGTTGTT AGTAATAAGTTATGAAAAAGACGTGTAAATATAGTGTGCCGGTTGTAGCTTCTCATAGTCCTAGCTGTTACTTTAATATC TGTTCAGTTCAGTTGTGTAGCCTAGCACCATTATATATATTGTAGCCCTTCATTCAGATTCACACTCTTGTTCATTCTCT TTCACTCTAATAAAGTTGAACATGTTTGATAAATGATATTCATTTGTTGCAATTTTTGTTTGTCTTGTTCTTTTTTTGGC CCTCTTCAGTAAGGCATCTCATTGGTATTTGATTTATCCAGAGTATAGAAATTACCTATGGATTAATGTTTGATATTGCA GGGCTCCAGCTGTGTTTGGTATTCTTCTGCAACTACTATGTGACTCATCAAATTTTATAATTAATCAGGATACAAGCTGC AGCAGCATTAGCTGTAAGTTATAACTAACCTGAATTATTCATTCATGCCTGTAAGTTATAAAGTTTCAAAAAACTTGAAA ATCCGCAACCTTAACTGTTGGATTTTTTTTAAATGCAGGGTACAGATACATGTATATTTCTCTCTGTTTTGTCTTCCCTA GTCTGAATTTGAGTTTGAGTCATTCAAAATCTTAATTATAAAATATGCTAGTGTCGAGTGTTAATTAACTGTAGACTTTC TACCTTCTATTCTTGACCTTTTGCTGTTATGTGTGTCTGTTGTGAACAACTATTAAAAGTTCTTATAGTTGTATCATGGT ATTAATTTTTTAGCTTTGTTCTTCTATACGCCTATACGTCTACCACCCGGTTCTTTACACTTGGTCATCGCATCATTAAG TTTCCGTGTTATTTGGCTGTTTTTAATCCTTTGAGCTTGTTCTTTTTGCTTGTTTAAATTATTGATTTACTAATTTAATG ATAATGTGACCTTGCCTATTTAATGATAATGTGACCTTGTCTTGGAATTTTGTCATGTTAATTCTAAAAAAGTGCCACAT TAACCGTGAGAGCTTCATATTTCAGCCTTGCGGTCTTTGTGATCATCATATTTCAGCTACAGAAGCAGTTTGTATATTCT GATTTGAAGGAATGTTGACATTATCTGATACTTCAATAGTTGTAACAGGAATTGTGTTCTCTGGTGGTCTCTTAGCTGTT GGCAAAAGTGAACAACTGAAGATGTTGGTGAACGGGAACTCTCTCCGCCTTCTATCATTCTAGGAACTTGTAGGGGAACC CTCTCAGAATCTAGATCAGTATACCTATTTGGAGCAGCATGAGACCAGCTGAGTTCTTTTCTTGATTTCTTTGCAGCTGT TTTGCTTGAAACTGGCCAACATGAGCTGATGGACGAATTGGGGTTCAGTGATATTTTGATGAATATATTTCTCAACTTTA AGAGTGTAACTTAGTGTTCAGTAGCTATAGTATGTAGCACTTCAAACAGAATGCCCCAACTACTTCTTGTCGTCTATCTA TAAAATGGTTGATCTGTTTCCTAGATATAGGTTGTGAGAAATGCAAATCTTAGAGCATGAGAGCAGACTTTGGCTTTACT GTCTGGAATTGAGTTGGTTATACATTCCCTCGTTATTTTATTCTTTATTGGGGTTGTAGGGAGGAATATTATGCTTGGAG CCCGCATCAAACAATGATTGTAAATTTGTGCATCATATTCAATTTTCTGATTTACT
CDS sequence (LotjaGi4g1v0029100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCTCAATCTCCGTCTGAAGCAAACAGAATGCATTGCTCGAATGCTAAATCTGAATCAACCTCTGAATTCATCTGG AACTGCAAACGAAGAAGCCTACAAGATCCTCATCTACGACAAGTTCTGCCAGAACATCCTCTCACCATTGATCCATGTCA AGGATCTTCGCAAACACGGTGTCACACTCTACTTCCTCATCGACAAGGATCGCAACCCCGTTCACGACGTCCCCGCCGTG TACTTCGTTCAACCCACCCACCACAACCTCCAGAGGATCATCGCCGACGCATCTCGCTCGCTCTACCACACCTTCAACCT TAACTTCTCCACCTCAATTCCTCGCCCACTCCTTGAAGATCTCGCATCTGGGACTCTGGCTTCTGATTCTATACAGAGAA TTTCCAGGGTTCATGATCAGTATCTTGAGTTTGTTACTCTTGAGGATGACCTGTTCTCGCTTGCCCACAAGCCTTGTTTT CTTCAGCTCAATGACCCTTCTGCTGGGGATCGTGAAATTGAGGAAATTGTGGAGAAGATTGTATCTGGGTTGTTTTGTGT TCTGGCTACGCTTGCTGTTGTGCCGGTTATCCGGTGCCCTCGTGGGGGGCCTGCTGAGATGGTTGCGACTGCGTTGGATC AGCGGATCCGTGATCATTTGTTGTCGAAGAATAATTTGTTTACTGAGGGTGGGAACTTTGTCAGCTCGTTTCAGAGGCCG GTTTTGTGTATCTTTGACAGGAATTTCGAGCTTCCGGTGGCGATTCAGCATGATTTCCGGTACCGGCCTTTGGTGCATGA TGTTCTCGGGTTGAAGCTGAATAGGTTGAGTGTTCAGGGGGAGAAAGGTGGGATGAGGTCGTATGAGTTGGATAGTTCGG ATTCGTTTTGGCTTTCGAATGGATCTTTGGAGTTCCCTGAGGTTGCGGTGGAGATTGAGACGCAGCTGAATAAGTATAAG AAGGATGTGGATGAGGTGAATAAGAGGACTGGGGGAACCCATGGTGCGGAGTTTGAGGGGACGGATTTGATTGGTAACAC GAAGCATTTGATGAATGCTGTGAACTCGCTGCCTGAGTTGACTGAGAGGAAGCAAGTGATTGATAAGCACACTAACATTG CTACTGTTTTGTTGGGTGAGATCAAGGAGAGGTCGCTTGATTCTTATGCGAAGAAGGAGAATGATATGATGGTTAGAGGG GGAATTGAGCGGAATGAGCTTCTTGGTGTACTCAGAGGGAAGGGAACAAAGATAGATAAGCTGCGTTTTGCCATCATGTA TCTTATTTCCTCAGAAAGCATTAATCCGTCAGAAGTGGAAGCTGTGGAAACGGCACTGAGAGAGTGTGAGGTCGATACTG CCGCTTTCCAGTATGTGAAAAAGATTAAGTCTTTGAATGTTTCATTGGCAGCGGCGAATTCTGCAAGTAGAAGTAATATT GTTGACTGGGCTGAAAAGCTCTATGGACAGTCAATAAGTGCAGTGACAGCTGGTGTCAAAAATCTTTTGTCTAGTGACCG GCAGCTAGCATTGGCTAGGACTGTTGAGGCCTTGATTGAAGGGAGGCCAAATCCTGAAACGGATGCATACCCAGCATTTG ATCCTCGTGCTCCCAAGTCTGGTTCAGGAGCAAGTAGCAGCCATTTGAAAGGGCCATTTAAGGAAGCAATTGTATTCATG ATTGGTGGCGGTAATTATGTTGAATATTGCAGTCTGCAAGAGCTTGCCCAAAATCAACAGCCTGCCAAGCATATCATATA TGGAACAACAGAAATGCTAACTGGAGTGGACTTTGTAGAGCAGCTTACATTGTTGGGACAGAAGATGGGTTTGGGTAATG TTGGCTCAACCTCAACTCAGTAG
Protein sequence (LotjaGi4g1v0029100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLNLRLKQTECIARMLNLNQPLNSSGTANEEAYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRNPVHDVPAV YFVQPTHHNLQRIIADASRSLYHTFNLNFSTSIPRPLLEDLASGTLASDSIQRISRVHDQYLEFVTLEDDLFSLAHKPCF LQLNDPSAGDREIEEIVEKIVSGLFCVLATLAVVPVIRCPRGGPAEMVATALDQRIRDHLLSKNNLFTEGGNFVSSFQRP VLCIFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMRSYELDSSDSFWLSNGSLEFPEVAVEIETQLNKYK KDVDEVNKRTGGTHGAEFEGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRG GIERNELLGVLRGKGTKIDKLRFAIMYLISSESINPSEVEAVETALRECEVDTAAFQYVKKIKSLNVSLAAANSASRSNI VDWAEKLYGQSISAVTAGVKNLLSSDRQLALARTVEALIEGRPNPETDAYPAFDPRAPKSGSGASSSHLKGPFKEAIVFM IGGGNYVEYCSLQELAQNQQPAKHIIYGTTEMLTGVDFVEQLTLLGQKMGLGNVGSTSTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 608 | 608 | 1.02E-145 | ||
| Gene3D | 3 | 136 | 134 | 1.3E-47 | ||
| PANTHER | 3 | 609 | 607 | 1.9E-253 | – | |
| PANTHER | 3 | 609 | 607 | 1.9E-253 | ||
| PIRSF | 4 | 613 | 610 | 3.2E-56 | ||
| Pfam | 35 | 601 | 567 | 3.1E-112 | ||
| Gene3D | 147 | 603 | 457 | 2.2E-127 | ||
| Gene3D | 258 | 502 | 245 | 2.2E-127 | ||
| Coils | 309 | 329 | 21 | - | – | |
| Gene3D | 384 | 509 | 126 | 2.2E-127 | – | |
| MobiDBLite | 522 | 548 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle docking involved in exocytosis | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0029100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…