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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0029100 |
| Transcript ID | LotjaGi4g1v0029100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3604971..3605981) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTCGTATGAGTTGGATAGTTCGGATTCGTTTTGGCTTTCGAATGGATCTTTGGAGTTCCCTGAGGTTGCGGTGGA GATTGAGACGCAGCTGAATAAGTATAAGAAGGATGTGGATGAGGTGAATAAGAGGACTGGGGGAACCCATGGTGCGGAGT TTGAGGGGACGGATTTGATTGGTAACACGAAGCATTTGATGAATGCTGTGAACTCGCTGCCTGAGTTGACTGAGAGGAAG CAAGTGATTGATAAGCACACTAACATTGCTACTGTTTTGTTGGGTGAGATCAAGGAGAGGTCGCTTGATTCTTATGCGAA GAAGGAGAATGATATGATGGTTAGAGGGGGAATTGAGCGGAATGAGCTTCTTGGTGTACTCAGAGGGAAGGGAACAAAGA TAGATAAGCTGCGTTTTGCCATCATGTATCTTATTTCCTCAGAAAGCATTAATCCGTCAGAAGTGGAAGCTGTGGAAACG GCACTGAGAGAGTGTGAGGTCGATACTGCCGCTTTCCAGTATGTGAAAAAGATTAAGTCTTTGAATGTTTCATTGGCAGC GGCGAATTCTGCAAGTAGAAGTAATATTGTTGACTGGGCTGAAAAGCTCTATGGACAGTCAATAAGTGCAGTGACAGCTG GTGTCAAAAATCTTTTGTCTAGTGACCGGCAGCTAGCATTGGCTAGGACTGTTGAGGCCTTGATTGAAGGGAGGCCAAAT CCTGAAACGGATGCATACCCAGCATTTGATCCTCGTGCTCCCAAGTCTGGTTCAGGAGCAAGTAGCAGCCATTTGAAAGG GCCATTTAAGGAAGCAATTGTATTCATGATTGGTGGCGGTAATTATGTTGAATATTGCAGTCTGCAAGAGCTTGCCCAAA ATCAACAGCCTGCCAAGCATATCATATATGGAACAACAGAAATGCTAACTGGAGTGGACTTTGTAGAGCAGCTTACATTG TTGGGACAGAAGATGGGTTTGGGTAATGTTGGCTCAACCTCAACTCAGTAG
CDS sequence (LotjaGi4g1v0029100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTCGTATGAGTTGGATAGTTCGGATTCGTTTTGGCTTTCGAATGGATCTTTGGAGTTCCCTGAGGTTGCGGTGGA GATTGAGACGCAGCTGAATAAGTATAAGAAGGATGTGGATGAGGTGAATAAGAGGACTGGGGGAACCCATGGTGCGGAGT TTGAGGGGACGGATTTGATTGGTAACACGAAGCATTTGATGAATGCTGTGAACTCGCTGCCTGAGTTGACTGAGAGGAAG CAAGTGATTGATAAGCACACTAACATTGCTACTGTTTTGTTGGGTGAGATCAAGGAGAGGTCGCTTGATTCTTATGCGAA GAAGGAGAATGATATGATGGTTAGAGGGGGAATTGAGCGGAATGAGCTTCTTGGTGTACTCAGAGGGAAGGGAACAAAGA TAGATAAGCTGCGTTTTGCCATCATGTATCTTATTTCCTCAGAAAGCATTAATCCGTCAGAAGTGGAAGCTGTGGAAACG GCACTGAGAGAGTGTGAGGTCGATACTGCCGCTTTCCAGTATGTGAAAAAGATTAAGTCTTTGAATGTTTCATTGGCAGC GGCGAATTCTGCAAGTAGAAGTAATATTGTTGACTGGGCTGAAAAGCTCTATGGACAGTCAATAAGTGCAGTGACAGCTG GTGTCAAAAATCTTTTGTCTAGTGACCGGCAGCTAGCATTGGCTAGGACTGTTGAGGCCTTGATTGAAGGGAGGCCAAAT CCTGAAACGGATGCATACCCAGCATTTGATCCTCGTGCTCCCAAGTCTGGTTCAGGAGCAAGTAGCAGCCATTTGAAAGG GCCATTTAAGGAAGCAATTGTATTCATGATTGGTGGCGGTAATTATGTTGAATATTGCAGTCTGCAAGAGCTTGCCCAAA ATCAACAGCCTGCCAAGCATATCATATATGGAACAACAGAAATGCTAACTGGAGTGGACTTTGTAGAGCAGCTTACATTG TTGGGACAGAAGATGGGTTTGGGTAATGTTGGCTCAACCTCAACTCAGTAG
Protein sequence (LotjaGi4g1v0029100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSYELDSSDSFWLSNGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFEGTDLIGNTKHLMNAVNSLPELTERK QVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIERNELLGVLRGKGTKIDKLRFAIMYLISSESINPSEVEAVET ALRECEVDTAAFQYVKKIKSLNVSLAAANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALARTVEALIEGRPN PETDAYPAFDPRAPKSGSGASSSHLKGPFKEAIVFMIGGGNYVEYCSLQELAQNQQPAKHIIYGTTEMLTGVDFVEQLTL LGQKMGLGNVGSTSTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 325 | 324 | 2.5E-133 | – | |
| PANTHER | 2 | 325 | 324 | 2.5E-133 | ||
| SUPERFAMILY | 2 | 324 | 323 | 1.07E-62 | ||
| Gene3D | 3 | 218 | 216 | 8.5E-78 | ||
| Pfam | 4 | 317 | 314 | 1.5E-46 | ||
| Coils | 25 | 45 | 21 | - | – | |
| Gene3D | 100 | 225 | 126 | 8.5E-78 | – | |
| Gene3D | 226 | 319 | 94 | 8.5E-78 | ||
| MobiDBLite | 238 | 264 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle docking involved in exocytosis | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0029100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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