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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009000
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 175 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.039s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055339.1
n.a. PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Glycine max] gi|356507166|ref|XP_003522341.1| chr0 17847299 17849124 -
2 domain predictions
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Lj0g3v0069129.1
n.a. n.a. chr0 24876359 24878394 +
2 domain predictions
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Lj0g3v0069139.1
n.a. elongation factor 1-alpha (EF1-a) [Cicer arietinum] gi|3319882|emb|CAA06245.1| chr0 24876556 24878645 -
2 domain predictions
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Lj0g3v0171439.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356576067|ref|XP_003556156.1| chr0 82188354 82192407 -
2 domain predictions
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Lj0g3v0248479.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 128801369 128805462 -
2 domain predictions
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Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
2 domain predictions
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Lj0g3v0272159.1
n.a. H/ACA ribonucleoprotein complex non-core subunit NAF1 [Medicago truncatula] gi|358345105|ref|XP_003636623.1| chr0 141036994 141039152 -
2 domain predictions
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Lj0g3v0281329.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| chr0 145851275 145866261 +
2 domain predictions
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Lj0g3v0341829.1
n.a. PREDICTED: alanine--tRNA ligase-like [Cicer arietinum] gi|502144716|ref|XP_004505726.1| chr0 179184877 179187519 +
2 domain predictions
 –
Lj0g3v0341919.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Glycine max] gi|356541316|ref|XP_003539124.1| chr0 179240705 179246839 -
2 domain predictions
 –
Lj0g3v0344739.1
n.a. n.a. chr0 180904363 180904948 +
2 domain predictions
 –
Lj0g3v0344749.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 180904840 180905596 +
2 domain predictions
 –
Lj1g3v0296910.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr1 3534273 3536548 +
2 domain predictions
 –
Lj1g3v0296920.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis vinifera] gi|225452282|ref|XP_002271032.1| chr1 3535434 3537275 +
2 domain predictions
 –
Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
2 domain predictions
 –
Lj1g3v1380860.1
n.a. PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi|502137208|ref|XP_004503008.1| chr1 16656786 16667427 -
2 domain predictions
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Lj1g3v2953650.1
n.a. PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Glycine max] gi|356530066|ref|XP_003533605.1| chr1 33587836 33593166 -
2 domain predictions
 –
Lj1g3v3330180.1
n.a. PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| chr1 37941452 37954161 -
2 domain predictions
 –
Lj1g3v3330180.2
n.a. PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| chr1 37941452 37957052 -
2 domain predictions
 –
Lj1g3v3690420.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr1 42579735 42582487 +
2 domain predictions
 –
Lj1g3v3975090.2
n.a. H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Theobroma cacao] gi|508719325|gb|EOY11222.1| chr1 46713964 46715545 +
2 domain predictions
 –
Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
2 domain predictions
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Lj1g3v4139340.1
n.a. 60S ribosomal protein L35a [Vernicia fordii] gi|209967441|gb|ACJ02349.1| chr1 48964856 48967167 +
2 domain predictions
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Lj1g3v4408630.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1| chr1 51422362 51426506 -
2 domain predictions
 –
Lj1g3v4808860.1
n.a. PREDICTED: translation initiation factor IF-2-like isoform X1 [Cicer arietinum] gi|502154667|ref|XP_004509778.1| chr1 58071813 58078537 -
2 domain predictions
 –
Lj2g3v0237250.1
n.a. PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi|502091438|ref|XP_004489551.1| chr2 4065555 4068074 -
2 domain predictions
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Lj2g3v0690370.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981079 +
2 domain predictions
 –
Lj2g3v0690370.2
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981613 +
2 domain predictions
 –
Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
2 domain predictions
 –
Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
2 domain predictions
 –
Lj3g3v0965840.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X2 [Cicer arietinum] gi|502089140|ref|XP_004488828.1| chr3 12847330 12851309 -
2 domain predictions
 –
Lj3g3v0965840.2
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr3 12847330 12852288 -
2 domain predictions
 –
Lj3g3v0988820.1
n.a. PREDICTED: translation initiation factor IF-2, chloroplastic-like [Glycine max] gi|356525823|ref|XP_003531521.1| chr3 13311370 13320024 +
2 domain predictions
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Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
2 domain predictions
 –
Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
2 domain predictions
 –
Lj3g3v2316620.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356556977|ref|XP_003546795.1| chr3 28483867 28486201 -
2 domain predictions
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Lj3g3v2737570.1
n.a. PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502099927|ref|XP_004491593.1| chr3 33828612 33832107 -
2 domain predictions
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Lj3g3v2737570.2
n.a. PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502099927|ref|XP_004491593.1| chr3 33829846 33832107 -
2 domain predictions
 –
Lj3g3v2779500.1
n.a. PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Cicer arietinum] gi|502082945|ref|XP_004487320.1| chr3 34168536 34172190 -
2 domain predictions
 –
Lj4g3v0230920.1
n.a. PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum] gi|502112306|ref|XP_004494288.1| chr4 2844754 2846761 +
2 domain predictions
 –
Lj4g3v0335820.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera] gi|225460636|ref|XP_002265125.1| chr4 3806886 3810643 -
2 domain predictions
 –
Lj4g3v1425330.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr4 22186873 22189124 +
2 domain predictions
 –
Lj4g3v1971930.1
n.a. PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| chr4 27386497 27391330 -
2 domain predictions
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Lj4g3v2628800.1
n.a. PREDICTED: HBS1-like protein-like [Glycine max] gi|356528366|ref|XP_003532775.1| chr4 35798039 35804862 +
2 domain predictions
 –
Lj4g3v2628800.2
n.a. PREDICTED: HBS1-like protein-like [Glycine max] gi|356512557|ref|XP_003524985.1| chr4 35798039 35804862 +
2 domain predictions
 –
Lj4g3v3114310.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr4 41964215 41967010 -
2 domain predictions
 –
Lj5g3v0890580.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Glycine max] gi|356500497|ref|XP_003519068.1| chr5 13167757 13175554 -
2 domain predictions
 –
Lj5g3v1699430.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr5 24693836 24695740 -
2 domain predictions
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Lj5g3v1938430.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356535772|ref|XP_003536417.1| chr5 27374595 27377475 -
2 domain predictions
 –
Lj5g3v1938430.2
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356535772|ref|XP_003536417.1| chr5 27379589 27382890 -
2 domain predictions
 –