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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0033300 |
| Transcript ID | LotjaGi4g1v0033300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT1G22040.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040; TrEMBL-Plants: tr|A0A0B2PC33|A0A0B2PC33_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi4g1v0033300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4056700..4060346) extracted from Lotus japonicus Gifu genome v1.2.
GGATATGATACCTTACATCACGTGTATTTCCCGTGCACTCTAACAGACACAAATAGAGGGTAAGTAAGTACCACTTGCTA TATATGTATGGTTCCCTGATGAGGTACTTAGTTGACTTCTGATTTCTGAGTCTTCTTTCTATTTTTAATTTTTTGAGTGT TTAAATATTGGCCATTGCATCCATTGCTTAATCTTCAGGAGACAGACTCACTGGACTGGAGTATAAGATATATGCTTGTT TGCTAAGCTGCTTATTTCTCTTTGGTTTCTACTTTCTAAATGAGGTGAGTGATTCTTTCTGTCTTTCTTTTTTTATATGA CCTCTACTCTTTATGGTAAAACCAATTTCTGCTTTATCCCTTGTTCCTGCTGTAGGCTTTTCTGGACTTCTTGTTTCTGG TTTAGTTTTGTCATTCTTTGCATGTTGAATGGTGTGTGACACATGTTTGGACTAGCTTCTATTTTTCCAGAATCAATTTT GGCATCGAAGCTACACACAGAAGCTTCTCCTCATAATTGATTTTGACTTTAAAATTAATTGTGGTTCTTAATTTGAATAT TTGCTTTTTCACATAAGAGCTCTTAGGCTTTGGTGGCGGTTTTGTTTTGGATACAGAAGGACTTTGCTGGTAACTTATGG AGAATGTGTTGGATATTATACTTGGCTAGAGTTTTTTAGAAGTTTGAGAACTTTGGTGGCTTCTAGTAAATGATGTGGGA AGTTTAATTATCTAACATCCTCCCTTAAACTCAGCTTCACCATTTACTAGAAGCCACCAAGACGAGGTTCTCGAACTTCT AGGAAACTGAAGCCAAAGTTTAAAATCCAACATAATGTATTCCCTTTGCTTGATTGTTATATTGAATAATATCTCTATAT TTTTCTTCTTTTTTCTTGGGGATGTAACTTTTTTGTGATAGTGAAAGAGTGCCAACCATGTGTGATATGAGGTTTCCTTA GAAGTTACAACTTATGCTTTATATATTAATGGCATATTGATGTGTATGGTAGATTGCTTGCATCAGTGCTAAAAAAGATT TATGGAAAGAATTAATGAATATTAATAACTTGTTTGTTCCAATGTGATATCATACAATAAATAGTCACTGTTTACATAGG ATTTACTTGCAATTTTTCTGTACCTGTTGTATACCCTTAGTCAGACATGGAGGTTCAATTCCAATTCATCAATGCAGTTT GTTTGCTGTGTGCTAACAGATTATCTAGAATGATGATGGTCTTAAACAAATTTATCTTGGAAGCTTGAAAGCTTGGTTTT GATTCAAATTTGAAGAGGTCTTAATGGGGAATATACTGAGTCAGAACAGTTCCAAGACTAGATCTAGTAGTTCTTTTGAG GTTTTGCAAGGGGAAGCTTGCAAGAGACAGAGGTTGTTATCAAGCATTCTCGACGACAACTTGAGAATAATTCCGGCACT TCCTAATGAGGTATCAACTCAGATTCTAGCTAGAGTTCCTCGAATTTATTACTTGAATCTGAAGTTAGTTTGCCGCACTT GGAAGGAAGCTCTTGAGAATTCTGAACTATTTCATGTGAGAAAAGAGCTTGGAACCACAGAGGAATGGCTTTACATACTA ACAAAGGTCAAGGATGACAAGCTTTTATGGCATGCCTTAGACCCTCTTTCCAGAAGATGGCAAAAGTTGCCACCAATGCC AAAAGTTGGCTTTGAAAATGAATCAAAGCAGGGTGTGTCTTCCTTTCCCCTTTGGAGCATGGTGAGTTCAAGCATCAGAA TTGCTGATATTATAATGAGCTGGCTCGGCCGGAGGGACGCGCTGGACCGGATGCCATTTTGCGGTTGCTCAATTGGAGCT GTTGATGGTTGCATCTATGCAGTAGGAGGATTTTCAAGAGCTTCAGCAATGAAATCTGTTTGGCAGTATGATCCAGTGAA AAACACTTGGACTGAGGCAAGTCCAATGTCTGATGGAAGAGCCTATTGCAAGACTGGTATATTGAATAACAAGCTTTATG TTGTTGGAGGGGTTACAAGGGGTCATGGTCATGGTGGACTAATCCCCCTTCAATCTGCAGAAGTATATGACCCCATTACA GGTATTTTGCTGTGAAGGGGTCCCTCACAGTTTTGTGGCATGGGGGGGGGGGGGGGGGGAGGGTGTAACATCCGGCCCGG TAGTCACCAATCTCTGAGCTCGACCCAGGATTTACACATAAGAGATTTCCTGGAGCATCCAAGTCTGGAACCAATAAGCT ACTAGCTGGTACCAGACTTGTATGCCCAAGACATTTAGCCTCAGGTTGTGGGAGAGGTAAAATATTCGCTTGAGGGGGTG AGGAAATATCCTACGTGTACATCGGGGAAAACCCAGAGGTTGGTGACACTCGAATGTTACAGAGGACACCACATCTATTG TTGTGATATTGGGGGGGGGGGTCACTTTTGTGACATGAGAGGGGGCATTGATATATTTTATACATCACATTGGACAAAAG AGGGAACCACACTAGTGAAAGGCAATTGAGTGTATGATTTGTTTCATTTATATACTTCATTTTCATCCAATTTGAGACTA CTTCTTGATTTATTTTTATTTTTATTTCTTACTCACTTGAGAATTCTCAACAGGTATATGGTCCCAATTACCTAGCATGC CTTTTGCAAAAGCTCAGGCTCTACCAACTGTTTTTCTAGCTGGTTTGCTCAAGCCTATTGCCACTGGAATGAGTTCATAT AGGGGAAGGTTATTTGTCCCTCAAAGCCTGTATTGCTGGCCATTTTTTGTTGATGCTGGTGGAGAAGTTTATGATCCAAA TGTGAATTCATGGCTTGAAATGCCAATTGGCATGAGTGAAGGTTGGCCTGCAAGGCAAGCTGGAACAAAATTGTGTGTTG CTGTCAATGATGTTCTGTATGCTCTTGATCCTTCAGATTCTCTTGACAGCACTGCAAAGATCAAGGTGTATGATTTTGAA GGTGATGCTTGGAAAGTTGCTGCAGGGGATGTTCCTATTCATGATTCAGCTGATCTAGAATCTCCTTATCTTTTGGCTGG TCTACTTGGAAAACTTCATGTGATAACTACAGATGGTGATCATAACATTGTAGTGTTGCAGGGTGACATGCAAAATGGTT TGGCTTTCTCCAAATTCAGTGAAGATGGTGAATCATCAGCAGAAACTGAGAAAGAATTTTGGAGGGTTCTTGCAACTAGG AGTGGTAGATCTGCTGAACTAGTTAGCTGTCAAACACTTGAAATTTGAAAAATTTGAGAATATAAACTTCTCTTATAGTT AAAATATCATAGTATGTCTTTGTTGGTTAATGTGATTGCTTTTCTGAATATGTGGGAGTCCTATGGGCTTATGAAGCTGA AGTTTTAGCCATCTTTAATATACGTTAATAGTAAATGTTACATTTACATTTTGAGTAAATCACTATCTGACTATCTATTC TTTGTGCATCTGTATCTACACTCTCTCGAGTCTACACTGGATATTTAAATGTGAATTTGAAGTTATATCTTAGTTAAGGA TAAGCTAAATAAATGTATCGCTCTCTCTTTTGAACTTCTAGCACCATTTTTGTATTTGAGGGTGTTATTTCCATTTTATT TTGCGTTCTGCCATGTCTAAATTAACTTATTAGTGGAGTTCCTAATG
CDS sequence (LotjaGi4g1v0033300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATATACTGAGTCAGAACAGTTCCAAGACTAGATCTAGTAGTTCTTTTGAGGTTTTGCAAGGGGAAGCTTGCAA GAGACAGAGGTTGTTATCAAGCATTCTCGACGACAACTTGAGAATAATTCCGGCACTTCCTAATGAGGTATCAACTCAGA TTCTAGCTAGAGTTCCTCGAATTTATTACTTGAATCTGAAGTTAGTTTGCCGCACTTGGAAGGAAGCTCTTGAGAATTCT GAACTATTTCATGTGAGAAAAGAGCTTGGAACCACAGAGGAATGGCTTTACATACTAACAAAGGTCAAGGATGACAAGCT TTTATGGCATGCCTTAGACCCTCTTTCCAGAAGATGGCAAAAGTTGCCACCAATGCCAAAAGTTGGCTTTGAAAATGAAT CAAAGCAGGGTGTGTCTTCCTTTCCCCTTTGGAGCATGGTGAGTTCAAGCATCAGAATTGCTGATATTATAATGAGCTGG CTCGGCCGGAGGGACGCGCTGGACCGGATGCCATTTTGCGGTTGCTCAATTGGAGCTGTTGATGGTTGCATCTATGCAGT AGGAGGATTTTCAAGAGCTTCAGCAATGAAATCTGTTTGGCAGTATGATCCAGTGAAAAACACTTGGACTGAGGCAAGTC CAATGTCTGATGGAAGAGCCTATTGCAAGACTGGTATATTGAATAACAAGCTTTATGTTGTTGGAGGGGTTACAAGGGGT CATGGTCATGGTGGACTAATCCCCCTTCAATCTGCAGAAGTATATGACCCCATTACAGGTATATGGTCCCAATTACCTAG CATGCCTTTTGCAAAAGCTCAGGCTCTACCAACTGTTTTTCTAGCTGGTTTGCTCAAGCCTATTGCCACTGGAATGAGTT CATATAGGGGAAGGTTATTTGTCCCTCAAAGCCTGTATTGCTGGCCATTTTTTGTTGATGCTGGTGGAGAAGTTTATGAT CCAAATGTGAATTCATGGCTTGAAATGCCAATTGGCATGAGTGAAGGTTGGCCTGCAAGGCAAGCTGGAACAAAATTGTG TGTTGCTGTCAATGATGTTCTGTATGCTCTTGATCCTTCAGATTCTCTTGACAGCACTGCAAAGATCAAGGTGTATGATT TTGAAGGTGATGCTTGGAAAGTTGCTGCAGGGGATGTTCCTATTCATGATTCAGCTGATCTAGAATCTCCTTATCTTTTG GCTGGTCTACTTGGAAAACTTCATGTGATAACTACAGATGGTGATCATAACATTGTAGTGTTGCAGGGTGACATGCAAAA TGGTTTGGCTTTCTCCAAATTCAGTGAAGATGGTGAATCATCAGCAGAAACTGAGAAAGAATTTTGGAGGGTTCTTGCAA CTAGGAGTGGTAGATCTGCTGAACTAGTTAGCTGTCAAACACTTGAAATTTGA
Protein sequence (LotjaGi4g1v0033300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNILSQNSSKTRSSSSFEVLQGEACKRQRLLSSILDDNLRIIPALPNEVSTQILARVPRIYYLNLKLVCRTWKEALENS ELFHVRKELGTTEEWLYILTKVKDDKLLWHALDPLSRRWQKLPPMPKVGFENESKQGVSSFPLWSMVSSSIRIADIIMSW LGRRDALDRMPFCGCSIGAVDGCIYAVGGFSRASAMKSVWQYDPVKNTWTEASPMSDGRAYCKTGILNNKLYVVGGVTRG HGHGGLIPLQSAEVYDPITGIWSQLPSMPFAKAQALPTVFLAGLLKPIATGMSSYRGRLFVPQSLYCWPFFVDAGGEVYD PNVNSWLEMPIGMSEGWPARQAGTKLCVAVNDVLYALDPSDSLDSTAKIKVYDFEGDAWKVAAGDVPIHDSADLESPYLL AGLLGKLHVITTDGDHNIVVLQGDMQNGLAFSKFSEDGESSAETEKEFWRVLATRSGRSAELVSCQTLEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 470 | 465 | 2.8E-199 | – | |
| PANTHER | 6 | 470 | 465 | 2.8E-199 | – | |
| Gene3D | 40 | 96 | 57 | 3.4E-5 | – | |
| ProSiteProfiles | 40 | 86 | 47 | 10.186 | ||
| SUPERFAMILY | 43 | 92 | 50 | 1.96E-6 | ||
| Pfam | 43 | 82 | 40 | 2.6E-7 | ||
| SMART | 46 | 86 | 41 | 2.6E-6 | ||
| SUPERFAMILY | 95 | 389 | 295 | 1.28E-39 | ||
| Gene3D | 109 | 393 | 285 | 1.1E-35 | ||
| Pfam | 171 | 216 | 46 | 2.0E-16 | ||
| SMART | 183 | 229 | 47 | 1.4E-13 | ||
| Pfam | 219 | 269 | 51 | 4.0E-11 | ||
| SMART | 230 | 282 | 53 | 0.0013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0033300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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