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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0042700 |
| Transcript ID | LotjaGi4g1v0042700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Major facilitator superfamily transporter; TAIR: AT2G22730.3 Major facilitator superfamily protein; Swiss-Prot: sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2; TrEMBL-Plants: tr|I1KL79|I1KL79_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0042700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5044009..5050222) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTTTTGTTGCTGGATCTGTGATGGAAAAACTAGAAATGTTTGAATTTTTGTGATTTAGGTTTGTGTTTTGGAGGGAG AGTAATTTTGGGTATTTTTTTGTTTCCCCCAATTTTGTGTGGGGAACAATTTTTTTCAATGAACAGTTCTGGGTTTTTTC TTTCAATGTTGGAATTGAATTTGTGTTGTTGGGTGTTATATTGTTTTGAATTTCATTAATGTAGGTCAAGAAATTTAAGA ATTCAATGTGTTTTGTGGTTGGAAGATTCTTAATCTGTTTTTTTTTTTATGTTGTTTTGTAGGTTACTGGCTATATTTTG TGTGATTAACATGTTAAACTATTTGGACCGAGGAGCGATAGCGAGCAATGGGGTTAATGGAAGTCGTGGAACTTGCACAA AAGGTGGTACCTGCACGTCTGGAACCGGAATACAGTATGTCTAAGATACACTAGGATCTTGTACTTAAGTTGTGAAAATG ATTCTGGTTGTTTTCGCATTTAATTTTGATCGGACCGAGCTTGAAGATTTAAGTGGTTGGGTTTCAGCTTTCAAAATGTC TTGACTTTTGATGACATGGTTGGGTTTCAAAATGTTTCTGTTACACACAGTGACATGTATTACATGGTTCTCAAACTATA AGAACATTTAATGCATCACTAACAAAAACCAATTTATCAAAGTAATACCTTTGATATTTTATTGCCTTTCCTCTTTACAG AACAAGAATAGAGGATGCTGAGGCAGCTTATATTAATTAGAGAGATATGACCATTTTCTGAATTGAAAAAGCACTCTTAG AATCTGTTTGGTTTACAGTTAGAAAGTTTGAAAACTGTAAAATAACACATCCCGGGACACTTTTTATTGAATTAGCTCAG GATGTGTTATTTTCATATTTTCTAATGGTAAACGAATCGGGCTCTAAGTTACTATGATAAAGAGAGAAAAAAATTGAGAC CTTGGTGATAAACATATTTTTCTGTTACCTAATTTTATCAGTGCTTCTCAATAGAAGTGTACCACCTAGATGGAGAAGTC TATTTATACTCTGCAAGATAACGATTACTCTTGCCTGTATGAGCTTTTCCTTGTGTTTGATGCCAAGACCTATTGTGCTG TATGGAGTGCTAAATTTTCAAAACTCATTAGTAGTTTTTGACAATAAAGTTTTCTACTTCCGTGTAGGGGTGATTTCAAC TTGAACAATTTTGAGGATGGAGTTCTATCATCTGCATTTATGGTTGGACTTCTTATTGCTTCTCCAATATTCGCATCTCT AGCAAAGAGGTAATGATTAATGACACTTTTTGGAACGAGTTATTTTATGGCAGCTTTCATGCTTTGTACTCTGTTTGGCC ATGATGTATCATGTATGTGAATGTCCTTTGGGCATTATGGCAATCAAAATAAATCATCTACTTGGGACATGGAGTTTTCT CCTATCCAGCCAACTTTTTGCTCATTCTGCTTTAGGTGCAGTTATGCTGGCAATCGCTGGTTTTCGTATTCTCCATTTGA GTACATGCTTTCATGGTTAAATGATTAACTTAGTGATACATATGGCATGCACATAAAGTTTCAGCATGAATGCCTCTAAG ATTTTTAGTTCAGTGACTACTCTTTTGCTCATGGGGTTCTTTGTGCTCTATTTAGTTTAACTATCGAACCTCTCAATGCT TCAGAATTATATAAACTTTTAAACAATCACTGATCTATTATATTTGTCAGAATACAACACATTCTTCACATGTGCATTGT ATCTATATTTCACATGGGCATCAGTATAGGAACTTGTCCGCAGGAACTAGAAAATTGTGTATGTAATTAGTATGCTCATG TACCTCTTACGTACCTATTAATAATCCATTAATTAGAATTTTCAACCACCTCTGTCATGTACATCCACATACAGTTTACA TGATCTATAATTGCTATCATTAACTTATAAATATTGATTGTTACGTAATTCCTATATTCTGCAGTGTAAACCCTTTTAGA CTTATTGGAGTTGGATTGTCAGTTTGGACTGGTGCAACCTTTTGTTGTGGTTTTTCTTTCAATTTCTGGACCATTGCACT CTGTCGAATGTAAGTGTTTTCTTCTGTTATTCTTCAAGCTCTATGGTTTTTGTATTGATTACTTAAATATCAGCACAAAA TGTAAGAATAACCATATTTGCTTCTTTTTGCTTTCATTATTCTCTGTAGGCTTGTTGGTGTTGGTGAGGCTTCATTTATA AGTCTTGCTGCTCCTTTCATTGATGACAATGCCCCGGTTTCACAGGTACCAGTATTGAGAAAATGAAAGCTACCATTGTA TAGTAACAAACTTACTCAAACTCTTTTAGTGTTATTGAATGCTATTAAGCATTAATGCAAAATTTTAGCTCTAATCAGTG AGGTGACTTAGCCTACATGAGTTGAGATAGTTGCTTCTTTTCAACATTTTAATGGTTTAAAGATATAATTTGAAACTTAC TGATGTACTTGTACCTTTCTTGGTAGTTGGAATGTTATATGTCATTGTGATTGCTGTCTGTTTTCTTTATGGTGCAAACC TTTCTTATAATGGCTTATGTATCAGAAAACGGCGTGGCTTGCTATATTTTACATGTGCATACCTGCTGGATATGCAGTGG GCTATATCTATGGTGGTTTGGTAAGTTTTCCTTTGGTTTTAATACAAGTTTAAATTACAGTAGTAATATATGCAATGTAG GTGTGAAAGAAAGATATATTTTTTGAAATTTAATGATAAGTAAAATTTGTTTTAGATAAAGAAAATCTTAAACAGGGACG TAATAAGAGTAGAAATTGGTTAAATTGTAAGTTTATTATAAATTTGGAATGATAGTTTTCTCCTCCGTTCTGCTATCAAT CACAATGAATGAATAAAAACCTAATGTTGTCTTGTAGGTAGAGAAAAACTTGGATGACAATTCAGGAAATTCCTTTTTTT TTTTTTAAATTATCAGTACTTTAGAAATAATCAATATGTCTATATTGCTTTATTTTCTTGTTTTTAAAATTGCCCTCTCT AATTTGATCTTTTTATTTTTTAAAAATAGGTAGGAAGTCATTTTGGTTGGCGTTGGGCATTTTTTACGGAGGCTGTATTG ATGCTTCCATTTGCTATTTTGGGATTTGTTATGAAGCCTTTGCAGTTGAAAGGTGCACATTTTTGTCATGCATTAATTGT TGCAGTTCCCAAATATTGTTTTCCATCTCTAAACTACCTGTGGATCCAGGTTTTGTCCCTGCTGATTCTAAGAAGGCGCT GACATCTGAGACAGTAGGGTCTGAAGTTCAAGGTACCATTATGTTTTACAGTAGTGCTACATAGCCAAAGAAATTTCCCA TAATTTGGCCAGGATTTTAGTGTAGTTGTTGGATAAAAGAAAGTAGTAATGATGCTTTACTCATTCTGACAAATCAATTC TGTCTAGATAGCATTTTCCTTTGCTTTTTTTTTATAGGCAAAAGAATTATGCACTATTTAAACAAAATATCTCACTGTTT CTTAAAGATCCACTGCTTTGCAATAAAAACTAGAATGTCAACAAGAAAGCAAGCTCAAAGTTGTAGAGATAAATATGTTA TGATGGATGAATGGATATATACACAAGACAAGATGGATTAAGAATGAAAGTATTGGAGAGAAAGTTAGACTACTATTTGA TTATCTATTGTTGGTTTGCTTCTGATTTACAATGTCTCTTTGTTGTGCTTATTGGAATTCACTTATTTGATGGATAGATG TCGATGCTTCAAATGGAAAAGATGAATCATTGTCCATGAAGGCAGAGTTCGGAGCTAAAAGCTCACATGAACCTTCCGAG TGAGAACAACACACTTATCTTTGTTTTTTGGAGTGGTTTCTTTACATTGAGTATATGATCAATTGGCCTTTATAGTGCCT TCTGCCTACTCAGGCATTACTGATGCATATAAAATTATATTTTGTTGATTCTCATCTTATTTTAGGTCAATATCTGCAAT CTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTAATAAGGTTTTTGTCGTCACTGTTCTAGGTACTTCTTCCTCCT ACTGATTCTGCATCAACTACTTTCTTTCTTTGTATTTAAGTTTTTTTGTTGTTATATTCATCTCTGAAGCTACTACATAT TCTTACAAACGATATTGTTTTACCGTGACTCTTAATATAATTCTATCATGTGAATGTCTAAATGCAGGTTACATAGCATA CAACTTTGTCATAGGTGCTTACTCGTATTGGGGTCCCAAAGCTGGTTATAGCATATATAACATGGTAAGAATTGGTTTCA TCTAATGGTGACATGTATGCATAAGATTTTATTAAGATTGTTGTTTATTCTTTCTTTTGTATCTTATTACTTGCTTAAAT TAAGTATATGCCTGGAAATTTAAGACAATTTCCCGGTGAAACACTTTCTTTGGTGCAATATTATTGTATTGAGAACTGTT TACCTTGGCAGACTAATGCAGATATGATATTCGGAGGAATTACAGTTGTATGTGGAATTTTGGGCACTTTAGCAGGAGGC TTTGTTCTTGATTTCATGGATAACACCCTTTCAAATGCATTTAAGGTTGGTATTTGCATGTGGATTCTAGCATCTTTTTT CTTCATGTTTATCCATCGCCAATGCAGTTTTTATTTTATTTTCTTATTTGTTGAGCACATTGAAGATCAATATGTTAGGT GCCTGGATTTACACCTTTAAAACTGTTAATTTGCAGGTTCTCTCATTGTCAACATTAATTGGCGGTGCATTTTGCTTTGG TGCCTTCTTATTTAAAAGCATGTATGGCTTCTTAGCCTTTTTTGCCATTGGTGAACTACTTGTTTTTGCCACTCAGGTAT AGTACTTCCCTTCCCAGCGTGAGGAAATTTCTTCAGTGTTTGCTAAACTTGATGCATTAAAAGATCAATTTTTAATGGAA TTGAGTTTGTGTATTATGTCTAGCCTAGATAATTTTCTGTTACTGCATTTTTATATATATGCTGAAATAGCTTGTAAGCA TTGGAATATATGGTCTAAATTAATACTCGTTAGAAACAGTTATAAATATAATATAAAATCATTCTTGTGTCTTCACCTAA TAGTTTAAGCTTTTAAGATAGTTGATTCATGACTTGGTATCAGAGTTTCTGACCAAGTGGTCTAGAATTCAAACACTGTC ACCCCCCATTGATTCAATTGAAAGTTGAATTTCAATACATGATAGGTGGTTATGCATTGTTCATCCTTCAAGCACAAATT TAAAGGGTTCTTGTGTGTGGGATAGTAGTAGAAATATAATATAAACTATTTGTGTTTTCGCCTAATAGCTTAAGCTTTTG GATTGTGCTTGCTTCATTACAAAAAGTCAAAAACCACTTTGTGCATCTGGTTAAAACTCAAAATCAAATCTTACTCCATA TTTTATCATTTTTCTTTCAGGGTCCGGTGAATTATGTATGTCTTCATAGTGTTAAACCAAGTTTGCGGCCGCTATCAATG GCAGTGTCTACTGTTGCTATTCATATCTTTGGAGATGTACCTTCCTCGCCTCTTGTTGGTGTTGTACAGGTTAGCATTAC CAAACAAGAGAGATAGAAGCAGATTATGATCCTCTCATTGAAATTTTGTATCTATCCATATCTTTATACTTATGGAATAA GTAAGACCGTATGAATATTTGCAAAAAGAGGTAGACACAAATGTTAACATGACAAGATGATGTAATATGAGAGCATCCTA ATCTAAATAGAAGCAGAGAAAATAACAAAATGTATTATGCCATATGCATTTTTCTGACTGTATGCACATGCTGGTAATGC AGGATAATATTAACAACTGGAGAACTACTGCGCTGATCCTAACAACTATATTTTTTCCAGCAGCTATAATATGGTTTATA GGTGAGTTATCATGGAACCTCTGTTGATTTTGTACAAAAAAATCACATTACTACTAATTTCTTTTAGAATCATTATACAA GAGCAAGGATGTTTTTAGGGAAAAAATGAGGGGGAATAACATTATTTGATAAATCAACTCATATATATTGTATGTTACTA CAGGAATATTTATGCATAGTGTGGATAGATTTAATGAAGACAGTGAGGATCAAGTATCAAGTGTTGAAAGGACAACCACA GCACCATTGCTTCAAGAGAAGACAGGACAAACATCAGCATTACAAGAATGCTGA
CDS sequence (LotjaGi4g1v0042700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAACTATTTGGACCGAGGAGCGATAGCGAGCAATGGGGTTAATGGAAGTCGTGGAACTTGCACAAAAGGTGGTAC CTGCACGTCTGGAACCGGAATACAGGGTGATTTCAACTTGAACAATTTTGAGGATGGAGTTCTATCATCTGCATTTATGG TTGGACTTCTTATTGCTTCTCCAATATTCGCATCTCTAGCAAAGAGTGTAAACCCTTTTAGACTTATTGGAGTTGGATTG TCAGTTTGGACTGGTGCAACCTTTTGTTGTGGTTTTTCTTTCAATTTCTGGACCATTGCACTCTGTCGAATGCTTGTTGG TGTTGGTGAGGCTTCATTTATAAGTCTTGCTGCTCCTTTCATTGATGACAATGCCCCGGTTTCACAGAAAACGGCGTGGC TTGCTATATTTTACATGTGCATACCTGCTGGATATGCAGTGGGCTATATCTATGGTGGTTTGGTAGGAAGTCATTTTGGT TGGCGTTGGGCATTTTTTACGGAGGCTGTATTGATGCTTCCATTTGCTATTTTGGGATTTGTTATGAAGCCTTTGCAGTT GAAAGGTTTTGTCCCTGCTGATTCTAAGAAGGCGCTGACATCTGAGACAGTAGGGTCTGAAGTTCAAGATGTCGATGCTT CAAATGGAAAAGATGAATCATTGTCCATGAAGGCAGAGTTCGGAGCTAAAAGCTCACATGAACCTTCCGAGTCAATATCT GCAATCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTAATAAGGTTTTTGTCGTCACTGTTCTAGGTTACATAGC ATACAACTTTGTCATAGGTGCTTACTCGTATTGGGGTCCCAAAGCTGGTTATAGCATATATAACATGACTAATGCAGATA TGATATTCGGAGGAATTACAGTTGTATGTGGAATTTTGGGCACTTTAGCAGGAGGCTTTGTTCTTGATTTCATGGATAAC ACCCTTTCAAATGCATTTAAGGTTCTCTCATTGTCAACATTAATTGGCGGTGCATTTTGCTTTGGTGCCTTCTTATTTAA AAGCATGTATGGCTTCTTAGCCTTTTTTGCCATTGGTGAACTACTTGTTTTTGCCACTCAGGGTCCGGTGAATTATGTAT GTCTTCATAGTGTTAAACCAAGTTTGCGGCCGCTATCAATGGCAGTGTCTACTGTTGCTATTCATATCTTTGGAGATGTA CCTTCCTCGCCTCTTGTTGGTGTTGTACAGGATAATATTAACAACTGGAGAACTACTGCGCTGATCCTAACAACTATATT TTTTCCAGCAGCTATAATATGGTTTATAGGAATATTTATGCATAGTGTGGATAGATTTAATGAAGACAGTGAGGATCAAG TATCAAGTGTTGAAAGGACAACCACAGCACCATTGCTTCAAGAGAAGACAGGACAAACATCAGCATTACAAGAATGCTGA
Protein sequence (LotjaGi4g1v0042700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNYLDRGAIASNGVNGSRGTCTKGGTCTSGTGIQGDFNLNNFEDGVLSSAFMVGLLIASPIFASLAKSVNPFRLIGVGL SVWTGATFCCGFSFNFWTIALCRMLVGVGEASFISLAAPFIDDNAPVSQKTAWLAIFYMCIPAGYAVGYIYGGLVGSHFG WRWAFFTEAVLMLPFAILGFVMKPLQLKGFVPADSKKALTSETVGSEVQDVDASNGKDESLSMKAEFGAKSSHEPSESIS AISRFLKDMKELLLNKVFVVTVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMIFGGITVVCGILGTLAGGFVLDFMDN TLSNAFKVLSLSTLIGGAFCFGAFLFKSMYGFLAFFAIGELLVFATQGPVNYVCLHSVKPSLRPLSMAVSTVAIHIFGDV PSSPLVGVVQDNINNWRTTALILTTIFFPAAIIWFIGIFMHSVDRFNEDSEDQVSSVERTTTAPLLQEKTGQTSALQEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 439 | 439 | 5.46796E-83 | – | |
| ProSiteProfiles | 1 | 443 | 443 | 21.735 | ||
| PANTHER | 1 | 476 | 476 | 7.0E-274 | – | |
| Phobius | 1 | 46 | 46 | - | – | |
| PANTHER | 1 | 476 | 476 | 7.0E-274 | – | |
| Gene3D | 2 | 188 | 187 | 4.0E-26 | – | |
| Pfam | 33 | 395 | 363 | 2.4E-32 | ||
| SUPERFAMILY | 34 | 437 | 404 | 1.2E-51 | ||
| TMHMM | 46 | 65 | 20 | - | – | |
| Phobius | 47 | 66 | 20 | - | – | |
| Phobius | 67 | 72 | 6 | - | – | |
| Phobius | 73 | 94 | 22 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 95 | 99 | 5 | - | – | |
| Phobius | 100 | 121 | 22 | - | – | |
| Phobius | 122 | 132 | 11 | - | – | |
| Phobius | 133 | 151 | 19 | - | – | |
| TMHMM | 133 | 155 | 23 | - | – | |
| Phobius | 152 | 162 | 11 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 163 | 182 | 20 | - | – | |
| Phobius | 183 | 252 | 70 | - | – | |
| Gene3D | 247 | 442 | 196 | 1.1E-12 | – | |
| Phobius | 253 | 275 | 23 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 276 | 294 | 19 | - | – | |
| TMHMM | 294 | 315 | 22 | - | – | |
| Phobius | 295 | 316 | 22 | - | – | |
| Phobius | 317 | 327 | 11 | - | – | |
| TMHMM | 328 | 346 | 19 | - | – | |
| Phobius | 328 | 346 | 19 | - | – | |
| Phobius | 347 | 351 | 5 | - | – | |
| TMHMM | 351 | 373 | 23 | - | – | |
| Phobius | 352 | 375 | 24 | - | – | |
| Phobius | 376 | 381 | 6 | - | – | |
| Phobius | 382 | 398 | 17 | - | – | |
| Phobius | 399 | 417 | 19 | - | – | |
| Phobius | 418 | 440 | 23 | - | – | |
| TMHMM | 420 | 442 | 23 | - | – | |
| Phobius | 441 | 479 | 39 | - | – | |
| MobiDBLite | 457 | 479 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0042700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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