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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0046500 |
Transcript ID | LotjaGi4g1v0046500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT1G61667.1 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|P23467|PTPRB_HUMAN Receptor-type tyrosine-protein phosphatase beta; TrEMBL-Plants: tr|I1KLB5|I1KLB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0046500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5447639..5448318) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAAGCACACAACCCAACCATAGTCACTTTCCTCAGCAATCATGTCTCTGACACCAAAATCGCTTGTTCTCACATTT CTCGTTGTTCTCCTTCTGGTTTCTCTGGTTCTTCCTCTGATGGAGACAACAACAACAAATTCTCCTTCTTCTGATCTTAT AGAGGTCCTCCACCACCATGGCTTGCCAGGGGGCCTCTTCCCTCGGAATGTGAAGTCATTCAATATGGATAAAAAAGGTC GCATGGAGGTGCACATGCATCATCCTTGTTGGGCTCAGTATGAAACCACAGTTTTCTTTGACTCTGTGGTGAAGGCCAAC CTCAGTTTTGGGCAGCTCAAGGTTTTGGAGGGAATGTCAAGGGAAGAGCTGTTTGTGTGGCTTCCTGTGAAGGATATCAG GGTCACTGATCCATCTTCTGGGCTCATTGTCATTGATATTGGTCTTGCCTTGAAATGCCTCTCTTTTTCTCGGTTTGAAG ATCCCCCAATCTGCAAATCTGATGATGGTAACTTCTATTGGTTTCTCACTCACTCTATAGTGGCATGTATCTCATTCATG ATAATGTTTTTTTTTCCTGAATTGATTGAAGACCTTTTAAATTAAGCTACAAATTATGGTCGCGGTTGCGATTGCATAAT TATGATGTTGTGTAAAATTATAAATAAATTTGGTTACAAT
CDS sequence (LotjaGi4g1v0046500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTGACACCAAAATCGCTTGTTCTCACATTTCTCGTTGTTCTCCTTCTGGTTTCTCTGGTTCTTCCTCTGATGGA GACAACAACAACAAATTCTCCTTCTTCTGATCTTATAGAGGTCCTCCACCACCATGGCTTGCCAGGGGGCCTCTTCCCTC GGAATGTGAAGTCATTCAATATGGATAAAAAAGGTCGCATGGAGGTGCACATGCATCATCCTTGTTGGGCTCAGTATGAA ACCACAGTTTTCTTTGACTCTGTGGTGAAGGCCAACCTCAGTTTTGGGCAGCTCAAGGTTTTGGAGGGAATGTCAAGGGA AGAGCTGTTTGTGTGGCTTCCTGTGAAGGATATCAGGGTCACTGATCCATCTTCTGGGCTCATTGTCATTGATATTGGTC TTGCCTTGAAATGCCTCTCTTTTTCTCGGTTTGAAGATCCCCCAATCTGCAAATCTGATGATGGTAACTTCTATTGGTTT CTCACTCACTCTATAGTGGCATGTATCTCATTCATGATAATGTTTTTTTTTCCTGAATTGATTGAAGACCTTTTAAATTA A
Protein sequence (LotjaGi4g1v0046500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLTPKSLVLTFLVVLLLVSLVLPLMETTTTNSPSSDLIEVLHHHGLPGGLFPRNVKSFNMDKKGRMEVHMHHPCWAQYE TTVFFDSVVKANLSFGQLKVLEGMSREELFVWLPVKDIRVTDPSSGLIVIDIGLALKCLSFSRFEDPPICKSDDGNFYWF LTHSIVACISFMIMFFFPELIEDLLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 24 | 24 | - | – | |
SignalP_EUK | 1 | 24 | 24 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
PANTHER | 2 | 166 | 165 | 6.8E-70 | ||
PANTHER | 2 | 166 | 165 | 6.8E-70 | – | |
TMHMM | 7 | 26 | 20 | - | – | |
SUPERFAMILY | 8 | 152 | 145 | 2.88E-31 | ||
Phobius | 8 | 19 | 12 | - | – | |
Phobius | 20 | 24 | 5 | - | – | |
Gene3D | 25 | 144 | 120 | 2.7E-21 | ||
Phobius | 25 | 156 | 132 | - | – | |
Pfam | 40 | 145 | 106 | 7.0E-24 | ||
Phobius | 157 | 177 | 21 | - | – | |
TMHMM | 159 | 181 | 23 | - | – | |
Phobius | 178 | 186 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0046500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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