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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0048000 |
| Transcript ID | LotjaGi4g1v0048000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G21440.1 MYB-like 102; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|V7BQH6|V7BQH6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0048000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5775634..5777930) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCCATTTGACTTCACCTGTTTCCTATCCTTGCAATCTCCTTAATTTTTGTTCTATTTATACAACAAGCAAGTTCGT CCTCATTGAGTTTCTTACACAATATAACTCAATTTCTCTCTCTGTCTCTATTAATTTGTTCACGTCCAAAACTTGTCCCC TCTTTTTGTGTCATCTACTTCAAGCAAACTCATTGACCAAGTAGTAGCTTACCCAAGAGCTAGTACTGCCATGGGGAGAG CACCATGTTGTGACAAGAATGGCCTCAAGAAAGGACCATGGACACAAGAGGAAGACCAGAAACTCATCGATTACATTCAG AAACATGGCTATGGCAACTGGAGAATACTCCCAAAGAATGCTGGTATGTCATTTGTACATTGAAATGTTACTTACAAATC CAAACAATCAGTGCACACACTCTTCAGACATTCAATTTTTCTCTCCATCTTTCTTTTCTTCTTATAATCATCATATATTC GATCAATTACTTATCTCTCTTTAATTCCTTTCTCGCTCTAGAAATGTTTGTTGGATGTTCTACAATGTTGGGATCTCTAT CAAACATTTTTATGTACTTGATCAACTAAAGTTGAAGGAATGAACTTTGCTCACTTTTCATTGAACAGGATTGCAAAGGT GTGGAAAGAGTTGTCGTCTCCGTTGGACAAATTATCTCCGACCAGATATTAAGCGAGGTCTATTCTCTTTTGAAGAAGAG GAGACAATAATTCATCTTCATAGCATTCTTGGCAATAAGTAAGTCTATTGGTTAATTAATTAAGTTGTTTTGTTTTCTCT TTGGTCAATTTAAATATACACATAACAAAGCATGAGTCAAATGATGTTTTTATTCATTAAAATGTAATAATATTGTTGCG GAGGTTGAATCCGATTACTTACCGGAATATTCTCGTCATTTAGAACCCGCTACTCATCTTAACATGAGGAGCCCCAAAAT AATAAATATAACCTCATCGCTCCGGAAAAACCTTAAACGACAAAGTCAACCCCTCACTCGAGCCTTTCTAAAAGGCTCAC ACAAGGGGTTGTCTCTACTGTTTTGAGGCTCCTCATGTTGAGGGACAAGTGGTGGGTTCCAGGGTGTTGAGGATATGTTG GTAATCGGATTCAACCGCCGGAATAGAACAAGACCCGTAGCTTTGCCAATGACGAAGTCTATGGTGACATGTAAGAATCG GCACCCAATGTGGCCATACCTTGTCATCTTCTCACAGGGTTGCCTCCATTGTTTTTGGGCTCTTTGGGTTGAGACGAGTG TCAGGTTCCTGGGTGTCGAGCGTATGCGAGTAACCGGATTTAACCATCAGCATATATGAAAGTGTAATAACTGTATTCTA TTATTTGATTTCTAGGTGGTCTACCATTGCTTCTCGTTTGCCAGGAAGGACAGACAATGAAATCAAGAATTACTGGAACA CCCACATTAGAAAAAGGCTCCTGAAAATGGGAATTGATCCTGTCACACATAGCCCAAGGCTTGATCTTTTGGACCTCTCT TCTATCCTAAGTTCACCTCTCTATGGCTCATCACAAATGAACATGTACCCTGAGATTCTAAAGCTGGCATCATCACTCTT CTCCTCCTCTCATCAGCAAAACCAAGACCTCAACATTTGTGACCAAAATAATGGTCAAGAGCATCATAACCAATCCTTCA ATCCTCAAATTCAGAACCAACAAATCCAACCTTGTGTTTCAATGCCTTTCAATCAATCACGATTGGTTGAGTCCAATTTG AACCCATACCCATCGATTTCCCCTGACTTTTGCTTCCAACAACATTCTCAGCTAAGTGATTGGCAGCATTGCAATGGAAT TGGTTCAAGCACCAAAACAGAGGATTTTGTCCCTCAATTACCATGCTATAATTACTACAATTCTGATTGTTATGCAAACA ACAACAACCAGAACATGAGCTTCTCTTCAGTTCTACCAACACCTTCGTCAAGTCCCACACCATTGAATTCAAACTCGACC TATAAAAATGGGAGCAGTATCACTGAAGATGAGACAGAAAGCTTTGTCAGCAGCAACAACATATTGAGATTTCAAATCCA AGATATGTTATGTGTGAGTGAGTTCTTGTAATGTTATCACTTTACATATCATCACCAAACCAAAGAAAATTGAATCAATT CCAAAAGGGTTGATTATTTCCTTGCATCGATTTATGGTGGATCGTAGCTAGTTAATTTCATAATTTGGCATCGATGATGT TGATGCTTGTAACATTTTCTTCTAAACCTTTAATGCTATTGATAGTTTGACTTTTTT
CDS sequence (LotjaGi4g1v0048000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAGCACCATGTTGTGACAAGAATGGCCTCAAGAAAGGACCATGGACACAAGAGGAAGACCAGAAACTCATCGA TTACATTCAGAAACATGGCTATGGCAACTGGAGAATACTCCCAAAGAATGCTGGATTGCAAAGGTGTGGAAAGAGTTGTC GTCTCCGTTGGACAAATTATCTCCGACCAGATATTAAGCGAGGTCTATTCTCTTTTGAAGAAGAGGAGACAATAATTCAT CTTCATAGCATTCTTGGCAATAAGTGGTCTACCATTGCTTCTCGTTTGCCAGGAAGGACAGACAATGAAATCAAGAATTA CTGGAACACCCACATTAGAAAAAGGCTCCTGAAAATGGGAATTGATCCTGTCACACATAGCCCAAGGCTTGATCTTTTGG ACCTCTCTTCTATCCTAAGTTCACCTCTCTATGGCTCATCACAAATGAACATGTACCCTGAGATTCTAAAGCTGGCATCA TCACTCTTCTCCTCCTCTCATCAGCAAAACCAAGACCTCAACATTTGTGACCAAAATAATGGTCAAGAGCATCATAACCA ATCCTTCAATCCTCAAATTCAGAACCAACAAATCCAACCTTGTGTTTCAATGCCTTTCAATCAATCACGATTGGTTGAGT CCAATTTGAACCCATACCCATCGATTTCCCCTGACTTTTGCTTCCAACAACATTCTCAGCTAAGTGATTGGCAGCATTGC AATGGAATTGGTTCAAGCACCAAAACAGAGGATTTTGTCCCTCAATTACCATGCTATAATTACTACAATTCTGATTGTTA TGCAAACAACAACAACCAGAACATGAGCTTCTCTTCAGTTCTACCAACACCTTCGTCAAGTCCCACACCATTGAATTCAA ACTCGACCTATAAAAATGGGAGCAGTATCACTGAAGATGAGACAGAAAGCTTTGTCAGCAGCAACAACATATTGAGATTT CAAATCCAAGATATGTTATGTGTGAGTGAGTTCTTGTAA
Protein sequence (LotjaGi4g1v0048000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKNGLKKGPWTQEEDQKLIDYIQKHGYGNWRILPKNAGLQRCGKSCRLRWTNYLRPDIKRGLFSFEEEETIIH LHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLKMGIDPVTHSPRLDLLDLSSILSSPLYGSSQMNMYPEILKLAS SLFSSSHQQNQDLNICDQNNGQEHHNQSFNPQIQNQQIQPCVSMPFNQSRLVESNLNPYPSISPDFCFQQHSQLSDWQHC NGIGSSTKTEDFVPQLPCYNYYNSDCYANNNNQNMSFSSVLPTPSSSPTPLNSNSTYKNGSSITEDETESFVSSNNILRF QIQDMLCVSEFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 7.8E-114 | ||
| PANTHER | 1 | 241 | 241 | 7.8E-114 | – | |
| ProSiteProfiles | 9 | 65 | 57 | 25.434 | ||
| Gene3D | 11 | 67 | 57 | 2.0E-20 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 1.87E-31 | ||
| SMART | 13 | 63 | 51 | 1.4E-13 | ||
| Pfam | 14 | 61 | 48 | 1.3E-15 | ||
| CDD | 16 | 61 | 46 | 7.26768E-13 | ||
| SMART | 66 | 114 | 49 | 2.7E-15 | ||
| ProSiteProfiles | 66 | 116 | 51 | 19.941 | ||
| Pfam | 67 | 111 | 45 | 3.4E-13 | ||
| CDD | 70 | 112 | 43 | 5.89166E-12 | ||
| Gene3D | 70 | 116 | 47 | 1.8E-19 | – | |
| PANTHER | 265 | 326 | 62 | 7.8E-114 | ||
| PANTHER | 265 | 326 | 62 | 7.8E-114 | – | |
| MobiDBLite | 278 | 302 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0048000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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