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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0049000 |
| Transcript ID | LotjaGi4g1v0049000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FAD-binding berberine family protein; TAIR: AT1G26400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FZC6|FOX3_ARATH Berberine bridge enzyme-like 5; TrEMBL-Plants: tr|V7CM27|V7CM27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0049000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5949136..5950844) extracted from Lotus japonicus Gifu genome v1.2.
GAAATACTAAACACCAACACAAAAACTACTACTTTCATCAGACGCTATGGAAACAATGGGTCCATGGACTCTTCTCTTGA CAACTTTAACCATTGTTCTGTCCATTTCACATGCAACTTCAGAATCATCCAATAAAAAATTCCTTAGCTGTCTTTCTAGC CATTCAAAAACTTCAAATATTCCAATCTCTGGAGCCATTTACATTCCACACAACACCTCATTCTTATCCATCTTGAACAT GCGCATACGAAACAACCGATACAAAACAGCAAGAACACCGAAACCTCTAGCTATCATAACTGCTCTGCATGAAAATCATA TCCAGCAAGCAGTTACATGTGCTAGGAGCAATGGCATTCAGATTAGGATCCGAAGCGGCGGCCATGACTATGAAGGTCTT TCATATGTATCAGATGTCCCTTTTGTTATCCTTGACATGTTTCATCTCAATGCAGTTAATGTGAACATTGGAGATGAGAC AGCATGGGTTCAGGCCGGTGCAACACTTGGCAACCTTTACTATAACATTGCTAAGAAAAGCAGAGTTCTTGCATTTCCAG CTGGAGTCAGCATTTACTTGGGTGCTGGTGGACACTTTTCTGGTGGTGGGTATGGAAATCTGATGAGAAAATATGGTCTT TCTGTAGATAATATCATTGATGCAAAACTTGTTGATGTCAATGGTAAAATTCTTGATAGAAAGTCTATGGGAGAAGATCT ATTTTGGGCTATTAAAGGAGGTGGTGGGGCCAGTTTTGGGGTCATTCTGTCATGGAAGATCAAATTGGTTCCTGTGACTC CAGAAGTGACTGTTTTCAATGTGAAAAAGACTGTGGAAGAAGGTGCAACTGATGTTGTTTATAAATGGCAACAAGTTGCA TCAAAACTGCATGAAGATCTTTTCATAAGAGCGATGGTTCAAGTGGTTGATGGAAAAGTGGGTAAAAAGACAGTGCTACT TTCTTTTATTGGTCAATTCCTAGGGCCAATTGATAAACTTTTACCTTTGGTGAATAAGAGCTTCCCTGAACTGGGTTTGC AGAAAAGTGACTGCACTCAAATGCCTTGGGTAAATTCAACCCTTTTCTGGATAAATAAGCCAATTGGGACACCCCTTGAA ACTTTACTAGGTATTTCAAAAGAGCTTCCTTCGTCCTATTTTAAAAGTAAGTCAGACTATGTGAAGAACCCAATTCCAAA GGAAGTTATGCAATCCATATGGCAATGGATGATTAAAGGTGAGAGTGTATGGATGCAATGGAATCCTTATGGTGGAAAGA TGGAGAAGATTTCACCATTTGAAACCCCCTTTCCTCACAGGGCAGGGAACTTATTCTTGATTCAGTACTCTACATTTTGG ACTGATGCTAAGGCTACAGATCATTATATGAACTTTTCAAGGTCATTTTATGAGTTCATGACCCCGTTTGTTTCAAAATC CCCAAGGGAGGCGTTCCTCAATTACAGAGATCTTGATATTGGAGCCAATCATCCAAGTAATGCAACAAGCATTGTCACTG CTTAAACTTATGGAAGAAAATTTTTTAAAGAAAATTTCGACAGATTAATGAGAGTGAAAACCAGGGTTGATCCTGATAAT TTCTTCAGATTTGAACAGAGTAAACCACCTTTGTCAAATTGGTTGTAAAATTGAGATGGTCTTATAATGTAAGAAAACAT AAGAAGAATAATGCAAATTCTTTTGCCAA
CDS sequence (LotjaGi4g1v0049000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACAATGGGTCCATGGACTCTTCTCTTGACAACTTTAACCATTGTTCTGTCCATTTCACATGCAACTTCAGAATC ATCCAATAAAAAATTCCTTAGCTGTCTTTCTAGCCATTCAAAAACTTCAAATATTCCAATCTCTGGAGCCATTTACATTC CACACAACACCTCATTCTTATCCATCTTGAACATGCGCATACGAAACAACCGATACAAAACAGCAAGAACACCGAAACCT CTAGCTATCATAACTGCTCTGCATGAAAATCATATCCAGCAAGCAGTTACATGTGCTAGGAGCAATGGCATTCAGATTAG GATCCGAAGCGGCGGCCATGACTATGAAGGTCTTTCATATGTATCAGATGTCCCTTTTGTTATCCTTGACATGTTTCATC TCAATGCAGTTAATGTGAACATTGGAGATGAGACAGCATGGGTTCAGGCCGGTGCAACACTTGGCAACCTTTACTATAAC ATTGCTAAGAAAAGCAGAGTTCTTGCATTTCCAGCTGGAGTCAGCATTTACTTGGGTGCTGGTGGACACTTTTCTGGTGG TGGGTATGGAAATCTGATGAGAAAATATGGTCTTTCTGTAGATAATATCATTGATGCAAAACTTGTTGATGTCAATGGTA AAATTCTTGATAGAAAGTCTATGGGAGAAGATCTATTTTGGGCTATTAAAGGAGGTGGTGGGGCCAGTTTTGGGGTCATT CTGTCATGGAAGATCAAATTGGTTCCTGTGACTCCAGAAGTGACTGTTTTCAATGTGAAAAAGACTGTGGAAGAAGGTGC AACTGATGTTGTTTATAAATGGCAACAAGTTGCATCAAAACTGCATGAAGATCTTTTCATAAGAGCGATGGTTCAAGTGG TTGATGGAAAAGTGGGTAAAAAGACAGTGCTACTTTCTTTTATTGGTCAATTCCTAGGGCCAATTGATAAACTTTTACCT TTGGTGAATAAGAGCTTCCCTGAACTGGGTTTGCAGAAAAGTGACTGCACTCAAATGCCTTGGGTAAATTCAACCCTTTT CTGGATAAATAAGCCAATTGGGACACCCCTTGAAACTTTACTAGGTATTTCAAAAGAGCTTCCTTCGTCCTATTTTAAAA GTAAGTCAGACTATGTGAAGAACCCAATTCCAAAGGAAGTTATGCAATCCATATGGCAATGGATGATTAAAGGTGAGAGT GTATGGATGCAATGGAATCCTTATGGTGGAAAGATGGAGAAGATTTCACCATTTGAAACCCCCTTTCCTCACAGGGCAGG GAACTTATTCTTGATTCAGTACTCTACATTTTGGACTGATGCTAAGGCTACAGATCATTATATGAACTTTTCAAGGTCAT TTTATGAGTTCATGACCCCGTTTGTTTCAAAATCCCCAAGGGAGGCGTTCCTCAATTACAGAGATCTTGATATTGGAGCC AATCATCCAAGTAATGCAACAAGCATTGTCACTGCTTAA
Protein sequence (LotjaGi4g1v0049000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METMGPWTLLLTTLTIVLSISHATSESSNKKFLSCLSSHSKTSNIPISGAIYIPHNTSFLSILNMRIRNNRYKTARTPKP LAIITALHENHIQQAVTCARSNGIQIRIRSGGHDYEGLSYVSDVPFVILDMFHLNAVNVNIGDETAWVQAGATLGNLYYN IAKKSRVLAFPAGVSIYLGAGGHFSGGGYGNLMRKYGLSVDNIIDAKLVDVNGKILDRKSMGEDLFWAIKGGGGASFGVI LSWKIKLVPVTPEVTVFNVKKTVEEGATDVVYKWQQVASKLHEDLFIRAMVQVVDGKVGKKTVLLSFIGQFLGPIDKLLP LVNKSFPELGLQKSDCTQMPWVNSTLFWINKPIGTPLETLLGISKELPSSYFKSKSDYVKNPIPKEVMQSIWQWMIKGES VWMQWNPYGGKMEKISPFETPFPHRAGNLFLIQYSTFWTDAKATDHYMNFSRSFYEFMTPFVSKSPREAFLNYRDLDIGA NHPSNATSIVTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 12 | 489 | 478 | 1.6E-240 | – | |
| PANTHER | 12 | 489 | 478 | 1.6E-240 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| SUPERFAMILY | 22 | 250 | 229 | 1.36E-50 | ||
| Phobius | 24 | 492 | 469 | - | – | |
| Gene3D | 26 | 134 | 109 | 2.0E-40 | ||
| TMHMM | 45 | 67 | 23 | - | – | |
| ProSiteProfiles | 76 | 250 | 175 | 18.253 | ||
| Pfam | 80 | 216 | 137 | 1.6E-27 | ||
| Gene3D | 139 | 486 | 348 | 2.3E-128 | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Gene3D | 253 | 465 | 213 | 2.3E-128 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi4g1v0049000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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