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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0050200 |
Transcript ID | LotjaGi4g1v0050200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Vacuolar sorting-associated protein 28-like protein; TAIR: AT4G05000.1 Vacuolar protein sorting-associated protein VPS28 family protein; Swiss-Prot: sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2; TrEMBL-Plants: tr|G7JRS3|G7JRS3_MEDTR Vacuolar protein sorting-associated protein VPS28, putative; Found in the gene: LotjaGi4g1v0050200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6087821..6090359) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTTTTCAACTGCTACACGTCGATGCCGTAAGCAATAATAATAGTATGTGGGAGCCCACACGCAACCCCTTACTGTG TGTTCTCTTTTCCCGTGTACCGTACCGCACCTGATTCATCATCTCATTGCAATCTCTTCTATACAAACCACCACAACCAT CGTTCTTCACACACATCACTCACACCGTGCCATAACGCTTTGCGGTTCCTGTAAGTCTCTCTCTTTTTCTTCCCATCTTT TCAAATTTCTCTTCAATTTTCTCCAATTTTTCTATCGATTATTGGTTTAGAACTTGCAATTTTGTGGAATTTTGGTGTTT CTTCTGATTTTAGGGATTGATTTTGACATGGGGGGTTTCGTTCCTGCTGATTCGTTTCGTTTGTTGTTTGATTGCTGAGA AATTTGAAGAAAATTTCACAAACTCAGAAATCAATGTTTTTTTTTAAACCTATTTTTCCATATGGAAGTAAAATTACAGA AACCTAGATTTGCATAACCTATGTTTAGTTGTCTATGTTGGATTACTTGTTGTCTATGTTTGTTTACTTGTTGTTTGTAT GAGATAAAGGTTGTTTTTATTGTAAGTTCTCTTCTGTTGTGTCTTTATTTTAGTGGTTAGATATTGAACAACATGAAATC CTGTTTTAAGTTTACTGTTATGGTTGCATTTTGATGTGTGATGTGATGATGAGATGAAATAATGATCTTAGTTCTTAGAT CCCTATTGTGGTGTTTGATCTTAGGACTTAGAAGTGGTTAGCTTACTGACTTTGTTTTGGGGCATGTTGTGTTTTTTCTT CAGTGAAGAAGGACCCTTCTCTTTGCGCGTGTCCCGTTCTCTTCTCCAATCCCCCACCATCTCTGTGATTTGGTCCTAAT ACAGTTTATTAATATATCCATGAGTACTACTATGGAGGTTAAGCTCTGGAATGACAAGCGCGAGAGAGAAATGTATGACA ACTTTGCTGAGCTTTATGCTATTATCAAAGCTACTGAGAGACTTGAAAAAGCCTATGTTAGAGATATAATCTCGCCGCAG GAATATGAATTAGAGTGCCAGAAGCTGATAGCTCATTTCAAAACCTTATCTTCCACCCTGAGAGACACTGTGCCTAGCAT TGATCGATTTGCAGATACTTACAGGATGGAGTGCCCGGCAGCAATTAACCGCCTCGTGGTATCTGGCGTGCCTGCTACCG TTGAGCACCGGGCCGCTTCTACCGCCTCAGCATCCACCTCAGCTGCCACTGTGGCTGAGTGTGTGCAGAATTTTATTACA TCAATGGATTCCTTGAAACTTAACATGATTGCTGTGGATCAGGTGCACCCGTTGCTCTCGGACCTTTATGCTTCACTGAA TAAGTTGACGATTTTGCCGCCAGATTTCGAAGGGAAAACAAAAATGAAGGAATGGATTGCAAGGTTATCAAAGATGGGTG CAGCTGATGAATTAACAGAACAGCAGGCTAGGCAGCTTCACTTTGATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCT CTGCCCAATGCTGGTACGTGATTGAGTCGGGGGTGGAGCTTGTAAAGTAAATCAGTAAATTGCTACTATTGTTGATTGGA AAGGGATTTTCTATTTGGTGACAGCTTATACATTTTAAAAGCTGGACCCTGGATATTTGCTATGGTGATTATTGAAGCTT TCTTTTATCTTGTGGATGAGCTTTGAGCTTTGGCTTTCTTTCCTGCTGTTGTTTTGCTTGAATTTGAGTTTCTCTGTACT TAGCAAGAGCGAAATCTTATAGAAACTTGACTTGAGTTTGTCTTTATATTTCTTTTATGTTAATAGATGTATTTCAACAT TACTCCTGAATCAGAACATAAGGTGTTAAAGGTACTTCAAATAGTTGACATCAATAGCATTTAGTATGCAGGACTCATAT GCATCAACTGAGCCTATAAATCATAGTAATGCAATGAATGACTTGATTTTTCTGAGAAAATAGACTTCTGAAACGTTCTA AGGTTTTCTGAAAATCCCTCAACATTGCACTGAAATTATTGTAGTCTGGAGATAATTTTTCCGTTATCCTATTCCTACGT GCTAAACCAGTCAATACAAGGCATTTTGGTGTTACTATATTATCAACTATCGAACACCTGAATGACCTCTTCTGTCAATT GTGTATCTTCACAAGATTATTGAGTATTGACTGGTTTTCCATACCTTCGCTTTGATGATCTTCATTAATTGCTAGCATAT CATGCTAAAATGTTTTTCTTCTCGTTTCTATCTTTCGTCAGGTGGTTTTAATTCCTTACTTCTAAACCCTAAATCCGGTA TATAGCATGAAACCTGATAAAATGATGAAAAGTAAAGTGGTGTTCTTCATATCAGCTTCTGATGTTCAAAGATTCGAGAA AATATGGGATTGTTTGTGCTTGATATTAGTTGCTATAATGCAACTCTATTGAGTTGGTATGCTAGTCGATTCATAAGTGA ATTATTGTTTAATTTAATCTAATGTTATTTAGCTCCATGCATGATTGGAAATTTGGTAG
CDS sequence (LotjaGi4g1v0050200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTACTACTATGGAGGTTAAGCTCTGGAATGACAAGCGCGAGAGAGAAATGTATGACAACTTTGCTGAGCTTTATGC TATTATCAAAGCTACTGAGAGACTTGAAAAAGCCTATGTTAGAGATATAATCTCGCCGCAGGAATATGAATTAGAGTGCC AGAAGCTGATAGCTCATTTCAAAACCTTATCTTCCACCCTGAGAGACACTGTGCCTAGCATTGATCGATTTGCAGATACT TACAGGATGGAGTGCCCGGCAGCAATTAACCGCCTCGTGGTATCTGGCGTGCCTGCTACCGTTGAGCACCGGGCCGCTTC TACCGCCTCAGCATCCACCTCAGCTGCCACTGTGGCTGAGTGTGTGCAGAATTTTATTACATCAATGGATTCCTTGAAAC TTAACATGATTGCTGTGGATCAGGTGCACCCGTTGCTCTCGGACCTTTATGCTTCACTGAATAAGTTGACGATTTTGCCG CCAGATTTCGAAGGGAAAACAAAAATGAAGGAATGGATTGCAAGGTTATCAAAGATGGGTGCAGCTGATGAATTAACAGA ACAGCAGGCTAGGCAGCTTCACTTTGATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCTCTGCCCAATGCTGGTACGT GA
Protein sequence (LotjaGi4g1v0050200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTMEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLSSTLRDTVPSIDRFADT YRMECPAAINRLVVSGVPATVEHRAASTASASTSAATVAECVQNFITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILP PDFEGKTKMKEWIARLSKMGAADELTEQQARQLHFDLESSYNSFMAALPNAGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 95 | 95 | 6.8E-31 | ||
PIRSF | 1 | 209 | 209 | 1.3E-80 | ||
ProSiteProfiles | 1 | 103 | 103 | 29.923 | ||
PANTHER | 5 | 213 | 209 | 6.4E-129 | – | |
PANTHER | 5 | 213 | 209 | 6.4E-129 | ||
SUPERFAMILY | 6 | 101 | 96 | 1.47E-29 | ||
Pfam | 22 | 208 | 187 | 9.4E-70 | ||
Gene3D | 110 | 210 | 101 | 3.9E-39 | ||
ProSiteProfiles | 113 | 209 | 97 | 45.098 | ||
SUPERFAMILY | 115 | 208 | 94 | 1.83E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | ESCRT I complex | An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes. | ||
Biological process | Endosome transport via multivesicular body sorting pathway | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. |
Expression pattern of LotjaGi4g1v0050200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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