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LotjaGi4g1v0050200.2

Overview

Field Value
Gene ID LotjaGi4g1v0050200
Transcript ID LotjaGi4g1v0050200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Vacuolar sorting-associated protein 28-like protein; TAIR: AT4G05000.1 Vacuolar protein sorting-associated protein VPS28 family protein; Swiss-Prot: sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2; TrEMBL-Plants: tr|G7JRS3|G7JRS3_MEDTR Vacuolar protein sorting-associated protein VPS28, putative; Found in the gene: LotjaGi4g1v0050200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:6088819..6089594) extracted from Lotus japonicus Gifu genome v1.2.

CTGACTTTGTTTTGGGGCATGTTGTGTTTTTTCTTCAGTGAAGAAGGACCCTTCTCTTTGCGCGTGTCCCGTTCTCTTCT CCAATCCCCCACCATCTCTGTGATTTGGTCCTAATACAGTTTATTAATATATCCATGAGTACTACTATGGAGGTTAAGCT CTGGAATGACAAGCGCGAGAGAGAAATGTATGACAACTTTGCTGAGCTTTATGCTATTATCAAAGCTACTGAGAGACTTG AAAAAGCCTATGTTAGAGATATAATCTCGCCGCAGGAATATGAATTAGAGTGCCAGAAGCTGATAGCTCATTTCAAAACC TTATCTTCCACCCTGAGAGACACTGTGCCTAGCATTGATCGATTTGCAGATACTTACAGGATGGAGTGCCCGGCAGCAAT TAACCGCCTCGTGGTATCTGGCGTGCCTGCTACCGTTGAGCACCGGGCCGCTTCTACCGCCTCAGCATCCACCTCAGCTG CCACTGTGGCTGAGTGTGTGCAGAATTTTATTACATCAATGGATTCCTTGAAACTTAACATGATTGCTGTGGATCAGGTG CACCCGTTGCTCTCGGACCTTTATGCTTCACTGAATAAGTTGACGATTTTGCCGCCAGATTTCGAAGGGAAAACAAAAAT GAAGGAATGGATTGCAAGGTTATCAAAGATGGGTGCAGCTGATGAATTAACAGAACAGCAGGCTAGGCAGCTTCACTTTG ATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCTCTGCCCAATGCTGGTACGTGA 

CDS sequence (LotjaGi4g1v0050200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTACTACTATGGAGGTTAAGCTCTGGAATGACAAGCGCGAGAGAGAAATGTATGACAACTTTGCTGAGCTTTATGC TATTATCAAAGCTACTGAGAGACTTGAAAAAGCCTATGTTAGAGATATAATCTCGCCGCAGGAATATGAATTAGAGTGCC AGAAGCTGATAGCTCATTTCAAAACCTTATCTTCCACCCTGAGAGACACTGTGCCTAGCATTGATCGATTTGCAGATACT TACAGGATGGAGTGCCCGGCAGCAATTAACCGCCTCGTGGTATCTGGCGTGCCTGCTACCGTTGAGCACCGGGCCGCTTC TACCGCCTCAGCATCCACCTCAGCTGCCACTGTGGCTGAGTGTGTGCAGAATTTTATTACATCAATGGATTCCTTGAAAC TTAACATGATTGCTGTGGATCAGGTGCACCCGTTGCTCTCGGACCTTTATGCTTCACTGAATAAGTTGACGATTTTGCCG CCAGATTTCGAAGGGAAAACAAAAATGAAGGAATGGATTGCAAGGTTATCAAAGATGGGTGCAGCTGATGAATTAACAGA ACAGCAGGCTAGGCAGCTTCACTTTGATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCTCTGCCCAATGCTGGTACGT GA 

Protein sequence (LotjaGi4g1v0050200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTTMEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLSSTLRDTVPSIDRFADT YRMECPAAINRLVVSGVPATVEHRAASTASASTSAATVAECVQNFITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILP PDFEGKTKMKEWIARLSKMGAADELTEQQARQLHFDLESSYNSFMAALPNAGT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 95 95 6.8E-31
PIRSF 1 209 209 1.3E-80
ProSiteProfiles 1 103 103 29.923
PANTHER 5 213 209 6.4E-129
PANTHER 5 213 209 6.4E-129
SUPERFAMILY 6 101 96 1.47E-29
Pfam 22 208 187 9.4E-70
Gene3D 110 210 101 3.9E-39
ProSiteProfiles 113 209 97 45.098
SUPERFAMILY 115 208 94 1.83E-34

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component ESCRT I complex An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
Biological process Endosome transport via multivesicular body sorting pathway The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0050200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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