Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0050200.2

Overview

Field Value
Gene ID LotjaGi4g1v0050200
Transcript ID LotjaGi4g1v0050200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Vacuolar sorting-associated protein 28-like protein; TAIR: AT4G05000.1 Vacuolar protein sorting-associated protein VPS28 family protein; Swiss-Prot: sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2; TrEMBL-Plants: tr|G7JRS3|G7JRS3_MEDTR Vacuolar protein sorting-associated protein VPS28, putative; Found in the gene: LotjaGi4g1v0050200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:6088819..6089594) extracted from Lotus japonicus Gifu genome v1.2.

CTGACTTTGTTTTGGGGCATGTTGTGTTTTTTCTTCAGTGAAGAAGGACCCTTCTCTTTGCGCGTGTCCCGTTCTCTTCT CCAATCCCCCACCATCTCTGTGATTTGGTCCTAATACAGTTTATTAATATATCCATGAGTACTACTATGGAGGTTAAGCT CTGGAATGACAAGCGCGAGAGAGAAATGTATGACAACTTTGCTGAGCTTTATGCTATTATCAAAGCTACTGAGAGACTTG AAAAAGCCTATGTTAGAGATATAATCTCGCCGCAGGAATATGAATTAGAGTGCCAGAAGCTGATAGCTCATTTCAAAACC TTATCTTCCACCCTGAGAGACACTGTGCCTAGCATTGATCGATTTGCAGATACTTACAGGATGGAGTGCCCGGCAGCAAT TAACCGCCTCGTGGTATCTGGCGTGCCTGCTACCGTTGAGCACCGGGCCGCTTCTACCGCCTCAGCATCCACCTCAGCTG CCACTGTGGCTGAGTGTGTGCAGAATTTTATTACATCAATGGATTCCTTGAAACTTAACATGATTGCTGTGGATCAGGTG CACCCGTTGCTCTCGGACCTTTATGCTTCACTGAATAAGTTGACGATTTTGCCGCCAGATTTCGAAGGGAAAACAAAAAT GAAGGAATGGATTGCAAGGTTATCAAAGATGGGTGCAGCTGATGAATTAACAGAACAGCAGGCTAGGCAGCTTCACTTTG ATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCTCTGCCCAATGCTGGTACGTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0050200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTACTACTATGGAGGTTAAGCTCTGGAATGACAAGCGCGAGAGAGAAATGTATGACAACTTTGCTGAGCTTTATGC TATTATCAAAGCTACTGAGAGACTTGAAAAAGCCTATGTTAGAGATATAATCTCGCCGCAGGAATATGAATTAGAGTGCC AGAAGCTGATAGCTCATTTCAAAACCTTATCTTCCACCCTGAGAGACACTGTGCCTAGCATTGATCGATTTGCAGATACT TACAGGATGGAGTGCCCGGCAGCAATTAACCGCCTCGTGGTATCTGGCGTGCCTGCTACCGTTGAGCACCGGGCCGCTTC TACCGCCTCAGCATCCACCTCAGCTGCCACTGTGGCTGAGTGTGTGCAGAATTTTATTACATCAATGGATTCCTTGAAAC TTAACATGATTGCTGTGGATCAGGTGCACCCGTTGCTCTCGGACCTTTATGCTTCACTGAATAAGTTGACGATTTTGCCG CCAGATTTCGAAGGGAAAACAAAAATGAAGGAATGGATTGCAAGGTTATCAAAGATGGGTGCAGCTGATGAATTAACAGA ACAGCAGGCTAGGCAGCTTCACTTTGATCTTGAGTCTTCTTACAATTCCTTTATGGCAGCTCTGCCCAATGCTGGTACGT GA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0050200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTTMEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLSSTLRDTVPSIDRFADT YRMECPAAINRLVVSGVPATVEHRAASTASASTSAATVAECVQNFITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILP PDFEGKTKMKEWIARLSKMGAADELTEQQARQLHFDLESSYNSFMAALPNAGT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.20.1440.200
1 95 95 6.8E-31
IPR038358
PIRSF
PIRSF017535
1 209 209 1.3E-80
IPR007143
ProSiteProfiles
PS51313
1 103 103 29.923
IPR017898
PANTHER
PTHR12937:SF2
5 213 209 6.4E-129 –
PANTHER
PTHR12937
5 213 209 6.4E-129
IPR007143
SUPERFAMILY
SSF140111
6 101 96 1.47E-29
IPR037202
Pfam
PF03997
22 208 187 9.4E-70
IPR007143
Gene3D
G3DSA:1.20.120.1130
110 210 101 3.9E-39
IPR037206
ProSiteProfiles
PS51310
113 209 97 45.098
IPR017899
SUPERFAMILY
SSF140427
115 208 94 1.83E-34
IPR037206

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000813
Cellular component ESCRT I complex An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
Subterm of
Part of
GO:0032509
Biological process Endosome transport via multivesicular body sorting pathway The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0050200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…