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LotjaGi4g1v0054900.1

Overview

Field Value
Gene ID LotjaGi4g1v0054900
Transcript ID LotjaGi4g1v0054900.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1KLI6|I1KLI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:6635270..6640189) extracted from Lotus japonicus Gifu genome v1.2.

GTAAAATATTGATATTATTATTTATTTAATAATAATAATAATGGCGTGGTAAGGGTGTTGTGGGTACACGTGTCCTTCAA AGCTCACGGTCTTGGCTTACAAGAACAGCATAGAAGCAACACGAAGCACCCTTCATTCATCTCCACCATTTTTCTCTCTC TTCACTGTCTCAAGGTAGAGTGAGAAACAAACCCCAGCCTTCCAGGGTTTCAAGGTTTCTTCATTCATTCATTCACCCAA CCAACCACCTCCTTCTCCTTCTCCTTCTCCTTCATTCACACAAAAAGTTTCCATTTTGAAGCTTTTTGCTTTGTGGGGTG TTCCTAATTTTGGTCATGTACGTGGCGGCTTCCATGCGTAAGTCCTTCAAGGACTCATTGAAACTCCTTGAAGCTGATAT TCACCATGCCAATACCCTGTCAGTTCTCTCTCTCACTCTTTGCTTTCACTTTACTCCATCATTTTTTCTTTCTGAATTTA ATGTAAAGGTGATCACTTTTCCTCTATTGTTGTTAAATTTCTTCCTTTTTTATTTTGGGGTAATTTCTGAGTGAGAAATT TTTCTGGGTATGTTGATTTTCTGTGATTTTTTTTTCTAATTTTTTTTTTTGATTGGCAAATTTTGGTTGGTAGTAATGTT TTTTGTTTTCATGTGTTTGCCTTTTTATCTTCTGGTCAGTGTTCATTTTTGGATTTTATTTCATGAATTGGGTGTATTTA GTTTGCTAAATTCAATTAATTTTGCTGATAAAAGTGATTTTCAATGTTGATTTTCCACTGAGTATTGCTTATATGTGTGC TTGTGTGTGGTGGAGTTGTCAATTAGTTTAGGTAGGGTTGAATTCCCCTGACTAATTTGGCTTGAGTACTATGGATTGTA CAAATTTCTGATTAGAATCCTCTGTAATTGGCAAAGATAATTTTTTGAAAGGGGTGCTCCTTTTTTTTCAACCTTTCAAT CCATTAATAATTATCAAATTTGTGCTAGTTAGTTATTGTTTTTTCATGGTATTTGGATGAGTAGGGCCTCAGATTTTCCT AGGGAATATGATGGAGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTCTGGTGCAGTG GACAGATTGTCACCTTGCTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGGTAAGGAGGAGTTTAGATTTTTTTT ATATGAATATTGAAAATTTGAAATGAGGGAGTTGGACAAGGTGAGGAATTTGCCTCATGATGTGTGTAGGTGTATGTGGA TGGGACAACCACCATGTCTACTCATGAAAGAAAAGCAAGCATTAGAGAATTCTATGGTATAATTTTCCTTGTGGTTTAAT CTAGATTGAGTTAGTTAGTTTGCTTTTTAGCTTTTGTTGGTTGCTGACACTGTTTAGCTTCTGATTTGAGCAGCGGTCAT TTATCCCTCTCTGTTGCAACTTCAGAAAGGCGTTACTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGT ATCGCAGAAGAGATGATGAAGAGTACTGGCAATCTTCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATG GAGACGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGCGAATGGTACTCCCTCAA CTCTCTGTGTGACTTTGTCTGTCCCTATTCTTTTACAATCATGACTTATAAGTATCAAGAAGACAGAGGATTTTAGGGTT GTTTGATTTTATTGTATTGACGTCTTTGGTTCTTTGTGGTTAACAATCAACTCTATGTCTATGGTTACATTTTGTTAGTT TTTGCTGATTTCATACTGTATAGACATGGTCACTACTAAATGACTACAGTGTTTAAGTAATAGTCCCATTCTTGAGTGAG CTGGAGCGCAGCCATCTTATCCACTGAACTAGCTAGAAGCTATCACTTGAATTTAATCCATTGAGCCCGGTTGGGTTTCC ATAGGTTTTGACTTTTGAGTTTGTTCATTATAAAGTAAAATGTCTTTTGCCATGGCAGAAGCTGTAAGTAGTGAAAATTA CAGGTCTTACAATAAGTGAGCCAGTGTTGTCAAATGCAGGAGGCTATGGCATGGTGGATTTTTGACAAATAATGGTCATG GCACGGCGGCTTTCATATTTTTGCTTGCATCTCCGCACATTTTGCTGTCTCCTCTCATTCACAAGTCTCTGCTCTTACCT CAAAGCCTCAAACTGCTCAGCTGCTCCCACATCTTCTCTGCCATCTTTGGCATCTCTACTTCTCTAGCCAATTGCAGATC TCTGATGAATGACTCGTTTTCTTCCTCATTCCCTTTTCTGCCTTTCTCTGTCTATATACTCTGTTCTGTTATCCATTCCT TCAGTTAATCTCTCTATTTCTTTCTCTCTTATGTCCTTTTGTTTCTGTGATTCTGTCCTTTTTGTTTAGTTGTTCAAGGG AATGATACTTTCAGCGAATTTTATTTATTGCAATGTTTCTAGTTTATTGACATAGGGTATTAGTGCTTTTTATTTTAGCT TGCAGGCTTTCGGTATCTCTCACTCTCTCTCTCCATATATATATGTGTGTGAGTGTGTGTAACATATATATATATATATA TATATATATATATATATATATATATATATATATATCCGCTAGAAGCGTAAGCTGCAATGTCATCCGCTACTTTTATGGCA GATTTAAGGCTTAATTCCATCTGCCATTAATAACATTGAAGAGTTGACTGGTTTTAGAATCTGGTGCTTGATTGCTGGTG TAATTTCCACCAAAGGCACCATGCATGAGGTACGTGTGATGTGTCATCACCTGTCACATTTCATTATTGATACTCGAGTG TGAATTTCAAAGAAATAAACAAAAATAGTATTAGGCTGTGAAGATGAAAAGAAATTAGTTGGGACTGATTTGGGAAGCAT AAGTAGTTACTAGAAGGATGTATCATACCTCCGGCATGCATAAGCAGCACCAGGTTACCCTTTATCATCCGAGTCTGGTT TATCAAATTCTAGCTGATGTCTCATACCTCCTGCATGCCTCGTGTTCTCTCAGTTTAGTTAAAGGTTTTAAGTGATTTGA TATCTTTTGCAGGCGAACAATATCACAGTCATGCCCATTTTGCCGTGACAACCTGAAGCGAGTAAACTCTGGTGATCTCT GGGTGTTTACTGATAGGAGGGATGCGGTAGATATGGCAACAGTGACAAGGGAGAACCTTAGAAGGCTTTTTATGTATATA GATAAGCTGCCTGTGATTGTTCCAGAATCCCTTTTTGACACATATGACTCACACATAAGGTAAGTGATTGCAACAGATAT ATTTTAATGTACGCTGTTGTCTTGGATTGATAGTTACTAGCTTTCAATTCAAGTGAGTCACATAAAAGTCGAAGCTGATT TGGCAAATTTAGTGTATCTTATATATAGAGTTTCAGTACTTGCTTCCCACTTCTACCAGAAGAATCCAGCCCTTTGTTAT TGTGGGTTGCTGGTGAAGTTGAGATGGTAAACTGTATCTAGCTAGCTCATTTGTATATTCCTGTACAGATGGAATTACTT AACAAGAGATTTGCACATCCTGCTCCTGTGGAATGACTAAGTTGTATCACTTGATTTATCTATGTTGCCTTTTCCTGCAA CCATATATTTTAGTAGTTATCATTGTTGGTATCTATAATTAGTGTGTTTGATATAGAAGGTGCGAATTTACTTGTATATT TTAGATTGGTGTTGCTCTGGGAAGATTAAACGTGCCCTTGCACAAATGGTTTATCGAGGCCCCTACATCAATTGAGTATT TCATTAACGACCTCTTACCCTGGTACTGAACTGAGTAATACAAATATGGACAGTTTCCCCAAGATAAAAAAAAAAAAACT TAAGTACTGCATCTTTCAAATAGCCATTTGTTAAAGGCTGCCTTTGTTAAATTTGCTTAGAAATTCTCCTACTTAATTCT GTGAAGAAACTTCAATGAGTAGTTTTTAAATTTCAGAATTGATTCTAGGGGAAAAGTAAGCTCATCCAAACATGCTACTA ATGTATTAAATGTTCGCCTCTTTATCTATTTTTCGGGCTCCGGTCCTTGCTCTTACCAGTTGCTACTATTTGCCATAGAG CTTTATCTAGTGGTCTTCCATTTTCTTTGCAATTTTTTTCTTGTATAGTAATCTTTTTCTAGGGGTCATTCGCCTTACTG TTGAACATTTTGAGAAGTTGTTGAAGTAGTGACTTCATATTATGTTTGGTGGGAATATGATATACTTAATTTGAATTGCA TGTCAATTAAAAATGTAGTGGATTTATGTCAAAAAAAATTGATCTGTGAGAATTATACTAGAAAAGTTTGTTAGATATTG TACAACAATTAACACTTTATTTTAAAGCCTAACACAGTATGCATCATGGGAGTTTTAAATGCACAACTCCTAAAAAAATT TCATTGTTTAATGTAACAGTGATAAGACAAACATAAGCACCCCCATAGTTAGCTCACCAATCACAATGCATTTATGTAGC TCCCAGTAATATTTCCTTCCTTTGATGAGACATAAAGCCATATAATTCGCTACATGTTCCTTTTTCTTTTTTGCAATTAC TAAAGGCAAGCTTTAAAATGTCCCCCTTGATTTGAACATCAGTCATGCTACTGCTCCCCTACATCTGATACAGTGATGCC TAGTGCAATGCGGATTGCTGATTCCATGTTAAAAAAATTCAGTAAGGTGACTACAAGGTTGAAACTCGAGACCTTGAAGT TATGAATTGACATTTTCATATATAGTCTTGAACTCTTTCACCTTTCACCACGTTAAGTAATGTAGGATTTTCTCACGTGG TTTTCTTGACCTTATTCGTTCTTAAGTATCAAATCTTCCT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0054900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACGTGGCGGCTTCCATGCGTAAGTCCTTCAAGGACTCATTGAAACTCCTTGAAGCTGATATTCACCATGCCAATAC CCTGGCCTCAGATTTTCCTAGGGAATATGATGGAGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGT TTCTTTTTCTGGTGCAGTGGACAGATTGTCACCTTGCTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGGTGTAT GTGGATGGGACAACCACCATGTCTACTCATGAAAGAAAAGCAAGCATTAGAGAATTCTATGCGGTCATTTATCCCTCTCT GTTGCAACTTCAGAAAGGCGTTACTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAGAAGAG ATGATGAAGAGTACTGGCAATCTTCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGT AAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGCGAATGGCGAACAATATCACAGTCATGCCC ATTTTGCCGTGACAACCTGAAGCGAGTAAACTCTGGTGATCTCTGGGTGTTTACTGATAGGAGGGATGCGGTAGATATGG CAACAGTGACAAGGGAGAACCTTAGAAGGCTTTTTATGTATATAGATAAGCTGCCTGTGATTGTTCCAGAATCCCTTTTT GACACATATGACTCACACATAAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0054900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYVAASMRKSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVY VDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDRKQKAVCMERYRRRDDEEYWQSSDLDIEREDECGICMETNS KIVLPNCNHAMCLKCYREWRTISQSCPFCRDNLKRVNSGDLWVFTDRRDAVDMATVTRENLRRLFMYIDKLPVIVPESLF DTYDSHIR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15315
7 248 242 9.0E-140 –
PANTHER
PTHR15315:SF70
7 248 242 9.0E-140 –
SUPERFAMILY
SSF57850
140 195 56 6.65E-13 –
Gene3D
G3DSA:3.30.40.10
142 199 58 6.0E-14
IPR013083
Pfam
PF13920
149 195 47 1.5E-9 –
SMART
SM00184
152 189 38 2.3E-6
IPR001841
ProSiteProfiles
PS50089
152 190 39 12.091
IPR001841
ProSitePatterns
PS00518
167 176 10 -
IPR017907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0054900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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