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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0054900 |
| Transcript ID | LotjaGi4g1v0054900.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT3G47160.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1KLI6|I1KLI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6636277..6638612) extracted from Lotus japonicus Gifu genome v1.2.
GGTATTTGGATGAGTAGGGCCTCAGATTTTCCTAGGGAATATGATGGAGCATGCCTTCAGATGAGAATGTCATACAGTCC AGCTGCACACCTGTTTCTTTTTCTGGTGCAGTGGACAGATTGTCACCTTGCTGGGGCCCTTGGATTGTTGAGAATCCTAA TTTACAAGGTAAGGAGGAGTTTAGATTTTTTTTATATGAATATTGAAAATTTGAAATGAGGGAGTTGGACAAGGTGAGGA ATTTGCCTCATGATGTGTGTAGGTGTATGTGGATGGGACAACCACCATGTCTACTCATGAAAGAAAAGCAAGCATTAGAG AATTCTATGGTATAATTTTCCTTGTGGTTTAATCTAGATTGAGTTAGTTAGTTTGCTTTTTAGCTTTTGTTGGTTGCTGA CACTGTTTAGCTTCTGATTTGAGCAGCGGTCATTTATCCCTCTCTGTTGCAACTTCAGAAAGGCGTTACTGATACTGAGG ATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAGAAGAGATGATGAAGAGTACTGGCAATCTTCTGACTTAGAC ATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTG CCTGAAATGTTACCGCGAATGGTACTCCCTCAACTCTCTGTGTGACTTTGTCTGTCCCTATTCTTTTACAATCATGACTT ATAAGTATCAAGAAGACAGAGGATTTTAGGGTTGTTTGATTTTATTGTATTGACGTCTTTGGTTCTTTGTGGTTAACAAT CAACTCTATGTCTATGGTTACATTTTGTTAGTTTTTGCTGATTTCATACTGTATAGACATGGTCACTACTAAATGACTAC AGTGTTTAAGTAATAGTCCCATTCTTGAGTGAGCTGGAGCGCAGCCATCTTATCCACTGAACTAGCTAGAAGCTATCACT TGAATTTAATCCATTGAGCCCGGTTGGGTTTCCATAGGTTTTGACTTTTGAGTTTGTTCATTATAAAGTAAAATGTCTTT TGCCATGGCAGAAGCTGTAAGTAGTGAAAATTACAGGTCTTACAATAAGTGAGCCAGTGTTGTCAAATGCAGGAGGCTAT GGCATGGTGGATTTTTGACAAATAATGGTCATGGCACGGCGGCTTTCATATTTTTGCTTGCATCTCCGCACATTTTGCTG TCTCCTCTCATTCACAAGTCTCTGCTCTTACCTCAAAGCCTCAAACTGCTCAGCTGCTCCCACATCTTCTCTGCCATCTT TGGCATCTCTACTTCTCTAGCCAATTGCAGATCTCTGATGAATGACTCGTTTTCTTCCTCATTCCCTTTTCTGCCTTTCT CTGTCTATATACTCTGTTCTGTTATCCATTCCTTCAGTTAATCTCTCTATTTCTTTCTCTCTTATGTCCTTTTGTTTCTG TGATTCTGTCCTTTTTGTTTAGTTGTTCAAGGGAATGATACTTTCAGCGAATTTTATTTATTGCAATGTTTCTAGTTTAT TGACATAGGGTATTAGTGCTTTTTATTTTAGCTTGCAGGCTTTCGGTATCTCTCACTCTCTCTCTCCATATATATATGTG TGTGAGTGTGTGTAACATATATATATATATATATATATATATATATATATATATATATATATATATATCCGCTAGAAGCG TAAGCTGCAATGTCATCCGCTACTTTTATGGCAGATTTAAGGCTTAATTCCATCTGCCATTAATAACATTGAAGAGTTGA CTGGTTTTAGAATCTGGTGCTTGATTGCTGGTGTAATTTCCACCAAAGGCACCATGCATGAGGTACGTGTGATGTGTCAT CACCTGTCACATTTCATTATTGATACTCGAGTGTGAATTTCAAAGAAATAAACAAAAATAGTATTAGGCTGTGAAGATGA AAAGAAATTAGTTGGGACTGATTTGGGAAGCATAAGTAGTTACTAGAAGGATGTATCATACCTCCGGCATGCATAAGCAG CACCAGGTTACCCTTTATCATCCGAGTCTGGTTTATCAAATTCTAGCTGATGTCTCATACCTCCTGCATGCCTCGTGTTC TCTCAGTTTAGTTAAAGGTTTTAAGTGATTTGATATCTTTTGCAGGCGAACAATATCACAGTCATGCCCATTTTGCCGTG ACAACCTGAAGCGAGTAAACTCTGGTGATCTCTGGGTGTTTACTGATAGGAGGGATGCGGTAGATATGGCAACAGTGACA AGGGAGAACCTTAGAAGGCTTTTTATGTATATAGATAAGCTGCCTGTGATTGTTCCAGAATCCCTTTTTGACACATATGA CTCACACATAAGGTAA
CDS sequence (LotjaGi4g1v0054900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGGGCCTCAGATTTTCCTAGGGAATATGATGGAGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACA CCTGTTTCTTTTTCTGGTGCAGTGGACAGATTGTCACCTTGCTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGG TGTATGTGGATGGGACAACCACCATGTCTACTCATGAAAGAAAAGCAAGCATTAGAGAATTCTATGCGGTCATTTATCCC TCTCTGTTGCAACTTCAGAAAGGCGTTACTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAG AAGAGATGATGAAGAGTACTGGCAATCTTCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGA ATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGCGAATGGCGAACAATATCACAGTCA TGCCCATTTTGCCGTGACAACCTGAAGCGAGTAAACTCTGGTGATCTCTGGGTGTTTACTGATAGGAGGGATGCGGTAGA TATGGCAACAGTGACAAGGGAGAACCTTAGAAGGCTTTTTATGTATATAGATAAGCTGCCTGTGATTGTTCCAGAATCCC TTTTTGACACATATGACTCACACATAAGGTAA
Protein sequence (LotjaGi4g1v0054900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYP SLLQLQKGVTDTEDRKQKAVCMERYRRRDDEEYWQSSDLDIEREDECGICMETNSKIVLPNCNHAMCLKCYREWRTISQS CPFCRDNLKRVNSGDLWVFTDRRDAVDMATVTRENLRRLFMYIDKLPVIVPESLFDTYDSHIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 223 | 221 | 1.2E-129 | – | |
| PANTHER | 3 | 223 | 221 | 1.2E-129 | – | |
| SUPERFAMILY | 115 | 169 | 55 | 7.69E-13 | – | |
| Gene3D | 117 | 174 | 58 | 5.0E-14 | ||
| Pfam | 124 | 170 | 47 | 1.3E-9 | – | |
| ProSiteProfiles | 127 | 165 | 39 | 12.091 | ||
| SMART | 127 | 164 | 38 | 2.3E-6 | ||
| ProSitePatterns | 142 | 151 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0054900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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