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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0054900 |
| Transcript ID | LotjaGi4g1v0054900.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1M0C0|I1M0C0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6636327..6638612) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTCTGGTGCAGTGGACAGATTGTCACCTTG CTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGGTAAGGAGGAGTTTAGATTTTTTTTATATGAATATTGAAAAT TTGAAATGAGGGAGTTGGACAAGGTGAGGAATTTGCCTCATGATGTGTGTAGGTGTATGTGGATGGGACAACCACCATGT CTACTCATGAAAGAAAAGCAAGCATTAGAGAATTCTATGGTATAATTTTCCTTGTGGTTTAATCTAGATTGAGTTAGTTA GTTTGCTTTTTAGCTTTTGTTGGTTGCTGACACTGTTTAGCTTCTGATTTGAGCAGCGGTCATTTATCCCTCTCTGTTGC AACTTCAGAAAGGCGTTACTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAGAAGAGATGAT GAAGAGTACTGGCAATCTTCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGTAAGAT TGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGCGAATGGTACTCCCTCAACTCTCTGTGTGACTTTG TCTGTCCCTATTCTTTTACAATCATGACTTATAAGTATCAAGAAGACAGAGGATTTTAGGGTTGTTTGATTTTATTGTAT TGACGTCTTTGGTTCTTTGTGGTTAACAATCAACTCTATGTCTATGGTTACATTTTGTTAGTTTTTGCTGATTTCATACT GTATAGACATGGTCACTACTAAATGACTACAGTGTTTAAGTAATAGTCCCATTCTTGAGTGAGCTGGAGCGCAGCCATCT TATCCACTGAACTAGCTAGAAGCTATCACTTGAATTTAATCCATTGAGCCCGGTTGGGTTTCCATAGGTTTTGACTTTTG AGTTTGTTCATTATAAAGTAAAATGTCTTTTGCCATGGCAGAAGCTGTAAGTAGTGAAAATTACAGGTCTTACAATAAGT GAGCCAGTGTTGTCAAATGCAGGAGGCTATGGCATGGTGGATTTTTGACAAATAATGGTCATGGCACGGCGGCTTTCATA TTTTTGCTTGCATCTCCGCACATTTTGCTGTCTCCTCTCATTCACAAGTCTCTGCTCTTACCTCAAAGCCTCAAACTGCT CAGCTGCTCCCACATCTTCTCTGCCATCTTTGGCATCTCTACTTCTCTAGCCAATTGCAGATCTCTGATGAATGACTCGT TTTCTTCCTCATTCCCTTTTCTGCCTTTCTCTGTCTATATACTCTGTTCTGTTATCCATTCCTTCAGTTAATCTCTCTAT TTCTTTCTCTCTTATGTCCTTTTGTTTCTGTGATTCTGTCCTTTTTGTTTAGTTGTTCAAGGGAATGATACTTTCAGCGA ATTTTATTTATTGCAATGTTTCTAGTTTATTGACATAGGGTATTAGTGCTTTTTATTTTAGCTTGCAGGCTTTCGGTATC TCTCACTCTCTCTCTCCATATATATATGTGTGTGAGTGTGTGTAACATATATATATATATATATATATATATATATATAT ATATATATATATATATATCCGCTAGAAGCGTAAGCTGCAATGTCATCCGCTACTTTTATGGCAGATTTAAGGCTTAATTC CATCTGCCATTAATAACATTGAAGAGTTGACTGGTTTTAGAATCTGGTGCTTGATTGCTGGTGTAATTTCCACCAAAGGC ACCATGCATGAGGTACGTGTGATGTGTCATCACCTGTCACATTTCATTATTGATACTCGAGTGTGAATTTCAAAGAAATA AACAAAAATAGTATTAGGCTGTGAAGATGAAAAGAAATTAGTTGGGACTGATTTGGGAAGCATAAGTAGTTACTAGAAGG ATGTATCATACCTCCGGCATGCATAAGCAGCACCAGGTTACCCTTTATCATCCGAGTCTGGTTTATCAAATTCTAGCTGA TGTCTCATACCTCCTGCATGCCTCGTGTTCTCTCAGTTTAGTTAAAGGTTTTAAGTGATTTGATATCTTTTGCAGGCGAA CAATATCACAGTCATGCCCATTTTGCCGTGACAACCTGAAGCGAGTAAACTCTGGTGATCTCTGGGTGTTTACTGATAGG AGGGATGCGGTAGATATGGCAACAGTGACAAGGGAGAACCTTAGAAGGCTTTTTATGTATATAGATAAGCTGCCTGTGAT TGTTCCAGAATCCCTTTTTGACACATATGACTCACACATAAGGTAA
CDS sequence (LotjaGi4g1v0054900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTCTGGTGCAGTGGACAGATTGTCACCTTG CTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGCGGTCATTTATCCCTCTCTGTTGCAACTTCAGAAAGGCGTTA CTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAGAAGAGATGATGAAGAGTACTGGCAATCT TCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGTAAGATTGTGTTGCCCAACTGCAA CCATGCCATGTGCCTGAAATGTTACCGCGAATGGCGAACAATATCACAGTCATGCCCATTTTGCCGTGACAACCTGAAGC GAGTAAACTCTGGTGATCTCTGGGTGTTTACTGATAGGAGGGATGCGGTAGATATGGCAACAGTGACAAGGGAGAACCTT AGAAGGCTTTTTATGTATATAGATAAGCTGCCTGTGATTGTTCCAGAATCCCTTTTTGACACATATGACTCACACATAAG GTAA
Protein sequence (LotjaGi4g1v0054900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSDENVIQSSCTPVSFSGAVDRLSPCWGPWIVENPNLQAVIYPSLLQLQKGVTDTEDRKQKAVCMERYRRRDDEEYWQS SDLDIEREDECGICMETNSKIVLPNCNHAMCLKCYREWRTISQSCPFCRDNLKRVNSGDLWVFTDRRDAVDMATVTRENL RRLFMYIDKLPVIVPESLFDTYDSHIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 187 | 150 | 1.5E-74 | – | |
| PANTHER | 38 | 187 | 150 | 1.5E-74 | – | |
| SUPERFAMILY | 79 | 134 | 56 | 5.7E-13 | – | |
| Gene3D | 81 | 138 | 58 | 3.6E-14 | ||
| Pfam | 88 | 134 | 47 | 9.5E-10 | – | |
| ProSiteProfiles | 91 | 129 | 39 | 12.091 | ||
| SMART | 91 | 128 | 38 | 2.3E-6 | ||
| ProSitePatterns | 106 | 115 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0054900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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