Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi4g1v0055200
Transcript ID	LotjaGi4g1v0055200.3
Related isoforms 4	LotjaGi4g1v0055200.1 LotjaGi4g1v0055200.2 LotjaGi4g1v0055200.4 LotjaGi4g1v0055200.5
Lotus japonicus genome version	Gifu v1.2
Description	Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp\|Q680U9\|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr\|A0A1J7GYK6\|A0A1J7GYK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:6656401..6662707) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCTGAGGTTAGGATCATTGCGAAGAACTTCATGGACATGGTGGCTTCCATGCCCTCCATGAAGCTTGATAAGCTCTA TGAAAATGGATTCATCTGTGAAGCTATTCTCAGGTTTTTGTCCCCACAAAACAACTTTTCATGTTTTCTTAGCTTATGTA AAAGATTATGTGTCTTTTTACAATAATATTAGGTTCTTTTATGGGATCTACTCTCCAGATTGTGTAGTTTTCATAGCTCT TGGGAATTCTGTATTCAAAATATGTGCCATTGTTGTGGAATTATTTTGTAATTTTTTTTCTTTATGTTTATAATTAAGTG CGCTACTTAAGTCCCCGAATGATAGCTCAACTGGTAAGAGCTAGGGGACATATAGGTTGGGTGGGGGAGGTCCAGGGATC AATCTCTGAAGGGTACAATTTATCTTTCCGATGCACCAAAAAAAGTGGGCTACTTAAATGGTATTTGTTTATTAGTTTCT TATGTTTTACTTTGTTAATATCAGGTCTCTTCCACCTCTAGCAAAGAAATATGTTTTACAGCTCCTGCATATTGATGGGC TGGTGTCAGCTAAATTATTGGAGGAGTGGGTGCTTCCAGATGGATTTTCAAAGCACAGAGTTGCCATTGATAGATTGGTT CAGTTGAGAGTTTTCATTGAAGCTGCTGACAGGTACATGATTATTCTATCTTGAAAAGTTTCATTTTCTATATGTTTCAT GAAGATGAAAAGTAGAGTGCTTCTGAATGGTTCAAACTGATTCATTTGATTTCGACATATAAGTGAACCCTTAGTATTAG GGTTCAATCAGAATGGGAAAGTGAAAGAAAATGTAATAGAGTTTGACGAGAATGAGAGAAAACAAAGAGAAAATTTGTAT TCTGAATTGTAATATTATTTAATGAATGAGTTGTATATAATTACATCCGCTTCACAAGAATTTATAGAAGACTAGCTTAG TAACGAACTTGATGGTTAAGTGACACACCTTAGCTGTAAGACTGACTGCTCTGACAAGCACAGCTATTACAAGCTGACTC AGCTACAATACAGTAACTGAAAGATCGTAATGCTATCTATTGTTGCTATGAGGTACTATAGTGACTAGTAACTAAACACT TAATTACTCTGATATCTACCTCTCAAACTCACTGTGGAATCAGTGAAAAATGATATAGAATCCTGAGTTTGTGATACAGC CCACATAGAGAAGCCCATAATTAAGCATGTATACAGCAGGAGAAAGTTGAGTGTGATATGCCCTATCATAGGACATGCAC ATCAAGCCTTCCTCTAATTTTTCTTTGATGAAATGTCTACCTTTTTCATTGGGTTTGATCATATCATGCTATATGGGATT ATGAGCAATATTAATAGCTGACTTGTTGCCACAATAGAGCTTCTAAGACCTTCATATTGGATCTTCAAATCGTCCAAGAT AATTTTGAACATAACAGCCCTCAGTATCCTTGAGCTGATTTAGGAGGCTCCAAATTAGGCTTGATATCAGAATTAGGAGC AATATTTGGTGACGGAAAGGGCTTAACAACACGTGTTGGTTAATTAGGTAGTTCAAGGAACTCATGACTCACAAGGATTA TCTTCCATCATTGAGATTCTCCCTTAAGGGTAAGACTTAGAGAAGAAGGCTTATTTTCAGTGAAGATGATATCAGCAGAC ATATGCCATTTTTTGGATGAGGGGTCATAGAACTTTACCCTTTTTGAGTGGATGAATACATAAGGAAAACACACATTATA GACCGAGGGTCAGGCTTAGCTCTATGGTGGCTATGAACTTAGACAAAGGCTGTGCACCCAAATAACCTAGGTATGAGACC GTGTTGGAGGTCCATGAGTGTGGAGCTGTTAAGGACCTCAATGGGGCTTTTGTAATTTAAAATTCTTGAGGGGAATCTAT TTATCATGTATGAGATAGTGAGAACAGCCTCTACCCTATATGATTTACGAACCTTTCCTTGACAGATAAGAGCCCGATAG TGTTGAGTTAGTCTACTATTCCTTTCAGCCAACCCATCTTGTTGGAGGCATGTTGACACAAATTTTTTTTTTTGATAGGA AAATGTTAGTTGTTAGTATTGTTAGTAAATTAGTCCCTCCTCAGGGTTCGAACCCTGGACCCTTCACCCTTCATCCCACC CAACCCTTATGTCCCCTAGCCTAATTGAAAGTAGGGAGAAAATGTTTGATTGAAATCATCCCTTGCATTGTGACCCTAAA TTGATTTGGAATCATTGAATGGAAATTGGGAATGATGGTACTCACATCAGATTTTCTATCTCTTATTAGGATATTATCTT TTATTAGGAGCATATCATTTAAGATATTATTCTTATTAGAGTAGGTTACTATAAATAGGAGTATTGTCACTAGGGGAAGG CAAGCAATTGATTATTAAGTTAAAAGGTTTATACCTTATAAGGGTTTTCCCTTGTTAAGATGGTTTCCTTCTTGTGTCTT TTATTTTGATAATAGATCAGTTATTTTATCCAGTAAATTACCTACCTGCCCCTATTTCTATTGTGTTTTGGCTGTTTGGG ATTTCCAACCCTAACAGAGTCACTTCTCTGGATTATATAGATTATTGTCCATCTCATTATGTGTATTTGTGTTTAGCTTT AAAAGACACAGTTCCAGAACAGTGCAATTATCATTTTGAAGCCTTTCCTTATACCATTCCACATAAGTAATTTTTCTTCT TCTGGCAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCAGAGAAGTCTCCAGAAACTTTTACTACATGGGTG AGTGGTACTTCATTTCATCTTATTTTTCTGTTCATATTTTTGGATAAGCTTCTATTAATGATAATATTCATCTCATCTTG TTCCCTTGATGCCATGAGGATATACAAAACATGTCTGTGTCATGCTAAAATCCCTTCCACTATTTATTTTGAGTTAACAA ACCTATATAGATAGTAGGTGGTCTCCATGGAATTTCTTCACCTGAATGGCATTTAATAGTCTCTCATGCATCCTGAATTT ATTATGAAAAGCAATTTCTCTAATGTAGTTATTAAGATGTAAACTGATGTCAGACAAGTTCAATATTAGCTTCAGCTGTG GTAATATTTTCTTGTGAATAAATGACAGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATCACTGTGAGACTACCA ACCTTAGAAGATCTTGAGGCTTATGCTCTAGAACAATGGGAGGTACAGTGTTTTATATTTGATTTCAATTTCTATTTATT CTGTACATTTACTTAAGAAATTTAATCTTTAATATTGTTTGTTTCATAAGTTGCTTTAATTATTTGATATAATTAATCTG AAGTGCCTTCTTTAAATTTTGACTAAAATGAAGCCTAAACTCTCCACTGACTTTGTTTTGTGAATGATGAACTAGCGTTT CTTGCTGCAACTTATAAGCCCAAGTCATGCTGAAAAATCCTTAAATATAAGTTCTTCTTTGATGAAAGTTTTCCAGCGGC GTCTCGTGAGTCAAAGGTTTTGTTTTACTTGGCATTATTACTTCTCATTTGTAACAGTGATATATGTATGTGGGCGCTGC AAACTATATCTCACATTTGATGTCATTTTTTTATGTACCAATACAGAGATAGAGAAGCTCCAAAATTGACTGAAAGTGGT TTCCAGTTTTTGGTATGCATCAAATGATCTATTAGTTACTTGAACTTAATGCAATGCAGTCTCCTAAATATAGACTTTTT TCCTTATGAATTGCAGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGTAG CTCTATCATTTTCTATTTAATTTCTTTGCTATTTGTTTTCTACATACTCTCCCTCATCCACTTTTAGTGCAGGAGAGAGG TGTTGAGGCCGCTGACTTGATCTCTTTCATGCTAGAGCTTAGTTTTCATGTCATTGGGGAGGTAAAAAATCTTATTCCTT GGTGGGAATCTGTTGATTATGAAGCTGTTTAATTATTCTACATTACTTCCACCAGTGTTGATCTGATAAACTTTGTTATC TCATTCGTTTTCTCCCTATAGCTGTGTTTGACAAAAACTGACTCTTAATTTTTTTCAATGCATTAGGCGTATAATATAAA CACATTGACCGATTTTCAGAGGAACATAATTAAGGACCTAGCAGACCTTGGACTGGTTAAACTTCAACAGGTTATAATAT TTCTTTGCTTATTTTTGTCGATAATATAATGAGGCTCATATAATTTTAACTGTATATTTAATAATCAGTATTTGTCTCCT TTTTTCTTTCTTTTTGTGATAACTTTATAGGGAAGGAAAGAAAGTTGGTTTATACCTACAAAATTGGCCACCAATCTTTC AGTGAGCTTGGCTGACTCATCATCTAGAAAAGAGGTCTCTTCTTGGTTTCCCAATGAATTTATTCTGATGGAAAATTAAA TGTAGTCTTGTTTCAGCATGTGGTTTTGGTAAACTTCTTAACAGGCATGCTATCGGGTAGGGGCTCTGTAGTGACTAGTG AGTTTTGTTTGTTTCAGCTGCACTTTTCCCTTTGTTCCTTGTTCACATAGTTTGCCATGTTCTTCTCCTTATATTCCTTC TTTCTTATAATAAAATTTATTCTTTTATCAACAAGAAGAAAGGAAAAACAGATTTAGATGTTGCTTTGAGACATTTATAT ATGGCCAAGTTGCTTTATTTGCTGTTAGTATATGCATGGATGTTTCTGTTGGGCAGGTTTGGTGTCTTGCTTGCTTCATC TCTGAAATTCTAACTCACAGAAAACTCACACAGAAAACTCATGTTTATTAGAGTTTTCAATTTTTACTGGATTACACTTG GGAAATCTGTTGATTCTTGTGCGTGAATCTTTTGTTGAACTACTATCTCCCACTACCTTAGATTGATGATCTCTAAGCTC TAACATGTCAAATTCAATTGATCTTTGGTTTTTTCGTGAATTTATTATTTTCCGTTACAGATGGTAGCAACAATAAATGT GGCCTTTTCTTTTGAAAACAAATACTTTTTTGTGTAAAGAGTTGCGAATGTTATTGAATTTAATATGTCATTCTGTTTAA TGTTTTTAGGGATTTGTGGTTGTGGAAACCAATTTTAGAGTTTACGCTTACTCAACTTCGAAATTACATTGTGAGATATT GCGGCTATTCTCAAGGTATGCCACCAAAATGTTATATTCTTCAATTTTCATCAAATAAGCCTTAGTCTTTCCTCCCTTTC CCCTGCACTTTTTGTTTTAGATCTTGTGGATATTAGAAGTTGATCTTCCTGGAAGATGCTATTCAATATGCTAACTAATA CAATGTATATTATGAAATTGTTAATTTGCTAGTAAACTTTTCAGCTGCTTATTTGTCTCAACAAAATGTGTTTTTATTCA TATCTAATTATCTAATAGTGAATAATTGTTATGCATCCAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATT ACAAAAGAAAGCTTGTATAATGCTTTTGAAAATGGCATTACAGCAGATCAGGTAGGTATTAGAAAATTTATCATATAGTA TCTGCTTTTTCACCCTTTCAGTTATGTAAACCAGTTTCCAACGAAGAAACCAAGAATTTCCATGAGGAAACCCTTTTTGA CTTGACTTTTAGAAACTTTAATTCAGACAATCTCGTATAAACAACTGTGTATATCATGTTGCAGATAATCAGTTTCCTTC AGCAGAATTCTCATCCTCGCGTTGCAGAGAGGATACCATCTGTGCCTGAAAATGTCACTGATCAGGTTTTGGATCTTAAT ATTCTGCGAGTTGGTTTCTTTTTTTTCTTCTGATGTTTAGCATTGTAATTATGACAGATTAGGCTGTGGGAAGCTGATCT GAACAGAGTTGAGATGAACGATGCATATTATTACGACGAGTTCCCTTCTAGGGTAAGCAACTTATTGCATGTTTGGATTG GTGATATGCATACAATCCACAACACGGAAACTTCAGAAGCTACACTTTGTGGTTTCTCTCTAAAAGTGATTATAGGACTC TTAACCGCTGAACCAAACACGTCCTTAGCATCTTTGACGTCTTAATAATCTCTTGTAATGTCTGTTTGATTGTTTGTCTC ATTTGTGGGCAGGATGTATTTGAAGGTGCATGTGACTGTGCCAGGGAATGGAATGGTATGTTATGGGAAGATTCAAAGAA GATGCTTATGGTGGTCAAGGCTGAGGTACATACATACGTGCGAGATTATTTGCGCAGCCAAAAGTAG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0055200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTGAGGTTAGGATCATTGCGAAGAACTTCATGGACATGGTGGCTTCCATGCCCTCCATGAAGCTTGATAAGCTCTA TGAAAATGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCCACCTCTAGCAAAGAAATATGTTTTACAGCTCCTGCATA TTGATGGGCTGGTGTCAGCTAAATTATTGGAGGAGTGGGTGCTTCCAGATGGATTTTCAAAGCACAGAGTTGCCATTGAT AGATTGGTTCAGTTGAGAGTTTTCATTGAAGCTGCTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCA GAGAAGTCTCCAGAAACTTTTACTACATGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATCACTGTGAGACTAC CAACCTTAGAAGATCTTGAGGCTTATGCTCTAGAACAATGGGAGCGTTTCTTGCTGCAACTTATAAGCCCAAGTCATGCT GAAAAATCCTTAAATATAAGTTCTTCTTTGATGAAAGTTTTCCAGCGGCGTCTCGTGAGTCAAAGAGATAGAGAAGCTCC AAAATTGACTGAAAGTGGTTTCCAGTTTTTGGAGAGAGGTGTTGAGGCCGCTGACTTGATCTCTTTCATGCTAGAGCTTA GTTTTCATGTCATTGGGGAGGCGTATAATATAAACACATTGACCGATTTTCAGAGGAACATAATTAAGGACCTAGCAGAC CTTGGACTGGTTAAACTTCAACAGGGAAGGAAAGAAAGTTGGTTTATACCTACAAAATTGGCCACCAATCTTTCAGTGAG CTTGGCTGACTCATCATCTAGAAAAGAGGGATTTGTGGTTGTGGAAACCAATTTTAGAGTTTACGCTTACTCAACTTCGA AATTACATTGTGAGATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAA GAAAGCTTGTATAATGCTTTTGAAAATGGCATTACAGCAGATCAGACTTTTAGAAACTTTAATTCAGACAATCTCGTATA A

Download CDS Sequence

Protein sequence (LotjaGi4g1v0055200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPEVRIIAKNFMDMVASMPSMKLDKLYENGFICEAILRSLPPLAKKYVLQLLHIDGLVSAKLLEEWVLPDGFSKHRVAID RLVQLRVFIEAADRKNEKTYKVNPTFQRSLQKLLLHGGTLPRESMPSNITVRLPTLEDLEAYALEQWERFLLQLISPSHA EKSLNISSSLMKVFQRRLVSQRDREAPKLTESGFQFLERGVEAADLISFMLELSFHVIGEAYNINTLTDFQRNIIKDLAD LGLVKLQQGRKESWFIPTKLATNLSVSLADSSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITK ESLYNAFENGITADQTFRNFNSDNLV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13152 View details on PTHR13152 Search for proteins/transripts with this domain View external data on PTHR13152	3	335	333	1.1E-102	IPR004598 Show description in modal box View details on IPR004598 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03849 View details on PF03849 Search for proteins/transripts with this domain View external data on PF03849	15	197	183	1.0E-35	IPR004598 Show description in modal box View details on IPR004598 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03849 View details on PF03849 Search for proteins/transripts with this domain View external data on PF03849	199	337	139	1.3E-47	IPR004598 Show description in modal box View details on IPR004598 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000439 View details of GO:0000439 AmiGO InterPro QuickGO	Cellular component	Transcription factor TFIIH core complex	The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.	Subterm of View details of GO:0090575
GO:0001671 View details of GO:0001671 AmiGO InterPro QuickGO	Molecular function	ATPase activator activity	Binds to and increases the ATP hydrolysis activity of an ATPase.	Subterm of View details of GO:0008047 View details of GO:0060590
GO:0006289 View details of GO:0006289 AmiGO InterPro QuickGO	Biological process	Nucleotide-excision repair	A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).	Subterm of View details of GO:0006281

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0055200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi4g1v0055200.3