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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0055500 |
| Transcript ID | LotjaGi4g1v0055500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT5G62020.1 heat shock transcription factor B2A; Swiss-Prot: sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c; TrEMBL-Plants: tr|I3SY63|I3SY63_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0055500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6689209..6691489) extracted from Lotus japonicus Gifu genome v1.2.
ACAAGATCGAAAATGAAATCAATGATAAGAAATAAAGGGAAAATCAATTTCCACGACACTAGTAGTTTCCTAGCTACCAA GTGGTGGGTGGAGTGCTACCACTATATAAAGGAAGAGTGTAGAAAATATAACCTGTTTAGGCAACACACAAGCCAAGCTA AGCATGGCTGAAAATATGGTGGAGCTCAACCTTGATTTAGGTAGCTTCTTCAGCCGTCATGCAGGGCAGTCCCCTAGGCC GCGGTGCCCGGCACCGTTTCTCTTGAAGACCTATGATTTGTTAGAAGAAGGTGGTGCAGAAGAAGATGGTGCCAAAATTG TGTCATGGAATTCAGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAACTCACCTTGCCTAGATATTTC AAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACATATGTAAGTCATTTTAATTTCGATATATCTCTATACTC TAACATATACAAGATGAGTGTTTCTAGCCTGGCGTAGATGAGATAGTAGTTACTATAATTCCCTCAACACAATCAGGTAT TCGCACTATACTGTAAACGGTTGGGTACTTGGGTGCATAATGTATTTTTTTCTCATTGTGATTGTTCCCCCTTCTATTTT TTCGATTCATTTACATACTACCATCTTTTTTATTTTCATAAATTTTATCTTCCTATTTCCATTTTCTTACTTCAGGAAAT CATATCTCACTTTTATCTTCTATATATCTCTCTCGGTGTGTGTGTGGATTTGGGGCTTAAAGGAATTATCACAATGGAAG CAAACAAATCAAACTACGTGCATCTAATTTCAAGAGTTTGGTCAAGTCAATATAACAGATAGTATGGTCAAATTAGTTAT TTTAACACAAAGTCAAAATCGTCGATTGTAGCTTACATGCTGTATTGTTATACTGGGAGCACACTTAAGTTGAATATATA TAAAGATAACCTTGCTTATTGCGAATGATAACAATGTCTTTGACTTTTTCACTTTATTTTCCTTTGTTCACAAGAGAGTA TTATTAGCATTTTTCTAAATTAAAGAAATCATATCAGATCTAGTGAATGCGAGCAGTATTGGGCTTTAGATATATAAAAC TTCAGCATCTTTACATTAGACTTAGACACCATATTTTAAACTAAAACCTTAAAGCATATGCATTTTGTGTAAAGTCCTAT CACATGTACTTGTACGAGTGGTGAAGTTGGTTCTCCACCAACATTGACACATTACCTTATTAAACACCATATCTTTCAAT CTAAACCTTAAGATATTGATGTATTTATCTTTTGGTGACTCACATATACTAATTTTCTTTTGTATCTTTGATGAGCGTCT TCATCCCGTTAGAGGGCGAGACACTAGGAAAACTGAGACGTTGTGTCTAACTATGGACTTTGTTGGTATTTAAATTTGTG TTCTCATTTTTTTTTTGTGGTGGTATATATAATTAACTTGTTTCATCTTTTCGGATCCTTATACAAACACAGGGTTTCAA GAAAACATCATCTAAAAGGTGGGAATTCCAGCATGAGAAATTTCAGAGGGGTTGCAGGCATATGCTGGTTGATATCACGA GGAAGAAGTGCGAGCCAAGTGTGTTTCCTTCATACCTCAAGTCTTCTTCTGAGGAAAACGCAACAATGACATCTAATTCA ACGGAAGAAAGCAAAGATTATCATGAACTACTCATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTGGAGCTGCAGAC GCAGATAGCTGAATGCAAATCACTACAAATGAAGTTGTTGGACTGCCTCTCTCAATTTATGGACAAACACCAAAATAAAG TTAGGAAAACATGCTAATTAATTGATGATTATTTAATGGAAGATGCAAATAGTGAAAAGAAAATTGTGGTGTTGCCGTGT TTGTCATTCAATACAAAATAGTACATGTTTTATCCTTTTTGGTTTTGTTAGATGTAATCTTCATTTGAGAATTTCGGAAA ATTACAAAACCCCTAGCTAGTGTTCTTCCTGAATTTAAGCGGGAGCACTATCTCAATCTCCATTGATAGTGCATGACTCG GGTTGAGTTTTCCAACACGATGGAGCAATGCAGAGACACGACAGTGGAGGTGCAAAGGCACTCCAATGCTCGAATATGTG TATGAGCAAAGAAAGAAAAGCTCAAGTTCTTATAAGAACAATAAGTTAGTAAGATGGGTAAAACTTTTGTAATTAAACTA TCAAATATTTATAGAGCACAATCTATATATATATAAAGGAG
CDS sequence (LotjaGi4g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAAATATGGTGGAGCTCAACCTTGATTTAGGTAGCTTCTTCAGCCGTCATGCAGGGCAGTCCCCTAGGCCGCG GTGCCCGGCACCGTTTCTCTTGAAGACCTATGATTTGTTAGAAGAAGGTGGTGCAGAAGAAGATGGTGCCAAAATTGTGT CATGGAATTCAGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAACTCACCTTGCCTAGATATTTCAAG CACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACATATGGTTTCAAGAAAACATCATCTAAAAGGTGGGAATTCCA GCATGAGAAATTTCAGAGGGGTTGCAGGCATATGCTGGTTGATATCACGAGGAAGAAGTGCGAGCCAAGTGTGTTTCCTT CATACCTCAAGTCTTCTTCTGAGGAAAACGCAACAATGACATCTAATTCAACGGAAGAAAGCAAAGATTATCATGAACTA CTCATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTGGAGCTGCAGACGCAGATAGCTGAATGCAAATCACTACAAAT GAAGTTGTTGGACTGCCTCTCTCAATTTATGGACAAACACCAAAATAAAGTTAGGAAAACATGCTAA
Protein sequence (LotjaGi4g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAENMVELNLDLGSFFSRHAGQSPRPRCPAPFLLKTYDLLEEGGAEEDGAKIVSWNSEGTGFVVWSPAEFSELTLPRYFK HNNFSSFIRQLNTYGFKKTSSKRWEFQHEKFQRGCRHMLVDITRKKCEPSVFPSYLKSSSEENATMTSNSTEESKDYHEL LMEENKNLKKERLELQTQIAECKSLQMKLLDCLSQFMDKHQNKVRKTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 208 | 192 | 3.0E-97 | – | |
| PANTHER | 17 | 208 | 192 | 3.0E-97 | ||
| Gene3D | 26 | 127 | 102 | 1.5E-31 | ||
| SMART | 28 | 125 | 98 | 1.1E-40 | ||
| SUPERFAMILY | 29 | 125 | 97 | 1.63E-27 | ||
| Pfam | 32 | 125 | 94 | 2.9E-29 | ||
| PRINTS | 74 | 86 | 13 | 3.4E-9 | ||
| PRINTS | 87 | 99 | 13 | 3.4E-9 | ||
| Coils | 158 | 188 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0055500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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