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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0070900 |
| Transcript ID | LotjaGi4g1v0070900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT2G03500.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|A0A072UMN0|A0A072UMN0_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi4g1v0070900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8988085..8992042) extracted from Lotus japonicus Gifu genome v1.2.
GCGAGGACCCGAAAGTGACTTTTAAAAAACGTTCCTCCTCCTTATTTCTCTCTCCCAACTCTTTATTTCACAGAATCTCC ACGTTCTGAATTTTCTTCCCTTCACATCTAACCCATTTTCCTTTTTCAATTTAATATTATTATTCTTCTCCTATTTTTAT TTATTTATTTATATCCCATTGCATCTTCTACTCACTATTTCTCTTCCTCTTTCCGTTTTTATCTTCCTCCTCAATCTTCA TCTTCTGCAACTCCTGAATCAAAATCTTCATCATCATCAATCTGAATCTGAAATACCCAAAAATAGAAAAATCGAAGATC CAATGGGTTCTGTTCCTGCAGAACTGAGCTTGGATTTAAGACCCAGTTTCGTTCCCAAAACCGTCGCTAATTTCCTCTAC GAACTCTCCACCATTCCTCGTTCCACCGATAAGCTTTCCAGGCTCCATGATTTCCTCGCCCGATTGGAAGACGAGCTCAG GAAGATCGATGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGACGGTTCGTTTCATCATCATCATCATT TTCTCGTTCTGATCATGTTTCTGATGATTTTCTTTTGATTTCATTACATGGGTTCTGTTTTATTCATCTTTCTAGTCCTT AAAATTCAATGGAGGCTAATGGGTTTTTTTTTTTTTTTTTTTTTGCCTTTGTGGTGTTTGTCTATTTGTCTGTGTATGCA GCAATTTTGGTTTTGAAGGAGGAATCAGAAAAATGCAGGGCTCATAATTCTCCACCAGTGTTGGAAGAGTTTATTCCATT GAAGAAAGAGCATGATCAGAGTGAGGAAAATGATAGCAAGGAGAATGAATGCAGGGATAAGAAGAATTGGATGAGTTCTG TTCAGCTTTGGAACAATACTACCCCTAGAAAAGCCTGTGATCAAATTCCAATCCAACATCTTAATTATAAATTAGATACC AAGGTAGTAACTCTAAAGGAAGAGTAAATTTTTAAAATGAAAAGAAAAGAAAAAGCTAAACTCTGTTCAGTTTAACATGT TTCAACATGAGCAGTGAATAATCTTAAAGAGGGTTGTTTTGTCTTGTCTTTGGTGATGGCAGAAAAATGAAGAAGGGAAC TCTGTGGTTGCTGAGGACCCTTTCCAATCTTGTAATGTTAAAAATGGAGGGAGTGCTTTTCTGCCTTTCTCCACATACTC TTCTATCCCCGTGACAACCGTGGCACTGCAAGCAGCCAAAGAAGAAAAGGAAGACACTGTTTTGAATAGACTTTCTCTTC TAACCCCTGGGGTGAAGAGTTTGAGGGAAGGATTTGGTTCAAGAGGGTCCAGAAGCAGCAGCTCCAGCAGGGCTGTTTCT TCCTCTTCTCCTCCTATCGTGCCGCCAAGTTTGCGTGCAGGATCTCTTCAGCAGCAGCAGAATGCTAGGAAACAGAGGAG ATGCTGGTCCCCGGAGTTGCACCGCCGATTTGTTAATGCATTGCAGAAGCTTGGAGGTTCTCAAGGTTAGAGATTCAAAC TTTACTTTTGATCTGCTTTGGGATGAATATGAATGAATGTCATTGAGTAGCTAGTAACTGTTACCATTGTGATGTATCTA TCTTTATTTCACTTTCTTCAACTTTAGATTTAGAGTTCTTTTACTTATTTAAATAAAGAATTCTAAACAGTTACACACCC AATTTTGACCAATTTGGAAATATAGATTAGTAAATTGATGGATGTGTTAAGAAGAGTGGATGGTGGTCTTAAATTAAAAG CCCAGGGGTATGATGCTGGAATTTTGTGTTGATTGCAATTTAGTTTTTCAAATAGTGACTTGGTTGAAGTTAGATCAACC AGGAGAAAGTAGGTGTGTGGCATATAGTATATACTGCTATTGAATCTGTAGGGTAGGCCTATTAGTCCAAGTGGTTCATC TTTGCATAGGCAGGTGAAAATGATATTTCATCTTGTTTGGATCATTTGCCTAATTAACTCCCCTGTGTTCTATCAATTGC AGCAGCAACTCCAAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTGACCAATGATGAAGTGAAGAGCCACTTGCAAG TGAGTTCTTGGTATTCATTTTTGTCTTAACTGCATGCTTGGTTGTCTGGTGCTAAGGCATACAGGAAATGCTTTGTCTAC TGTGGACCAAGAAAAATCTGATTCACTAGTTAAAATGATTTTTCTGCAAATTAATTTTAGCACATGAGTAACAAATTGTA AATAATACATGCTAAATGTTAGTAGTAAAAACATGGTTTGTGGATGGACTAGGTTTTAACTTAGTCCACTGTAGAAATGC CATACAAGAAAACCATGTTAAGATTTTCTTGCCTTATGAAGTTTGAATTGGTGTTTAACATATGGTTCTTTCTTTCTTTT ATTGCAGAAATACCGACTTCATACTCGGAGAGTTCCGGCTGCAACCGCTAATCAGCCGTGTGTAGTTCTTGGAGGTTTGT GGATGTCCCAAGATCAGCACAACGACTCTTCAAAGGGTAGAAGTTCTGTGTCCGGTTCGCCGCAAAGTCCCCTTCATTTA GCTGCAGGTTCCAGGGGAGGGACATCCCCGACCGAGGGTGACAGCATGGAGGATGATGATGATACTAAATCCGAGAGTTA TAGCTGGAGAAGTCACATTCACAAACCAGGACAAGTTTATGTATAGGATACTACTCCTACACCATGAATTTTGCAGATAA AAGTATACATGGGAGGAGTTTTACGGCTACAGAAGAATAATAATACATAGAAGAGGGTCAAAGGAGAGAGGCTATTGGAA ATTTTGAAGGCTTAGTTTGCCTTCTATTCTACATGAGTTTTGATTTGAGACTCCGAGTTAAAAATGAGGAAGGTCAATTT TTACATATCATTTATTCTTTCATTTCTTGTTGTCACTGTGCCCCATGAGAAGCAGTCCAGTGTTGAGAGTCTCTGCATGT TTTGTTGGTTTCATGATTAGACCTAATTGCTGGATTATTTCTTTACATACCTTATTTACACATATAAATCACTCTACAGA GTTCACTGATTACTCTTGTCCATGTTTGCACTGAAACACTGCATAACAGATTAAGTAACATTCCTGTTATTTCATCATAT TGAGCCTGGCACTGGTTGCAATTTGTCAAAATATGGCCTTCAAAAGCAGTATCTATAACTGTCCCAATCTTACTGTGTTT GGATTGTCAAACTCAAACTCTATATGGATCCGCAGTAGAATCATGTTTCTTCGATTCATGTTAAACTCAACTCGATTCAT GTTAAACTCAACTCAATGTGACAAATTTTAACATCTTATTAATACATTGAGATATGTGAAATTAGGTTTGCTTTTACATC AACACCAAGTCAAAAAATCCTATAATAAACTGTGGCCATTTGTTGTATCAATTTTTCCTATTTCACCATATGATAGATAT CGAAGACATCATTTAGTGAGAGAAGATCTTAAGTCAGGATCTTCGAGGACGTTTTGGTTAAATTAAGGTTGAAAATTTGA TTAATGTTTAAGAATATTTTAAAGTGTGTCTAAGATTAGTTTTATTTAAATTATTTTTGAAATGTATTGATAAAAGAATT GCGGATTTTATAATTTTATTTATTTGTAAATTAAAAAACTTTACATTTTTTTAAATTTTAATTTACTTATTAATTTTTAA AAATTAATAAAAAATGAAATAAGAGGAGATTGCAATTTATGTTGATGGAATTTGATCATTAGAATGTGATTCTTAGATAA AACATATTTTAAGCTTGTTTGGATGGATAGTCACCACACAATGTCACAATGAAAGCACTATTGGAAGCATGTTTTCCGTG AAGCTAATTCAGTGGCGGACGCTTTTGCTAAGAATGGTTTAACCTTGCCAATGCCTATGAAAATCTACGACAGTCTGCCT TCTTTTGGTTATGCCCCTTTAGGTTTGACTCTTGTAAT
CDS sequence (LotjaGi4g1v0070900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTGTTCCTGCAGAACTGAGCTTGGATTTAAGACCCAGTTTCGTTCCCAAAACCGTCGCTAATTTCCTCTACGA ACTCTCCACCATTCCTCGTTCCACCGATAAGCTTTCCAGGCTCCATGATTTCCTCGCCCGATTGGAAGACGAGCTCAGGA AGATCGATGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGACGCAATTTTGGTTTTGAAGGAGGAATCA GAAAAATGCAGGGCTCATAATTCTCCACCAGTGTTGGAAGAGTTTATTCCATTGAAGAAAGAGCATGATCAGAGTGAGGA AAATGATAGCAAGGAGAATGAATGCAGGGATAAGAAGAATTGGATGAGTTCTGTTCAGCTTTGGAACAATACTACCCCTA GAAAAGCCTGTGATCAAATTCCAATCCAACATCTTAATTATAAATTAGATACCAAGAAAAATGAAGAAGGGAACTCTGTG GTTGCTGAGGACCCTTTCCAATCTTGTAATGTTAAAAATGGAGGGAGTGCTTTTCTGCCTTTCTCCACATACTCTTCTAT CCCCGTGACAACCGTGGCACTGCAAGCAGCCAAAGAAGAAAAGGAAGACACTGTTTTGAATAGACTTTCTCTTCTAACCC CTGGGGTGAAGAGTTTGAGGGAAGGATTTGGTTCAAGAGGGTCCAGAAGCAGCAGCTCCAGCAGGGCTGTTTCTTCCTCT TCTCCTCCTATCGTGCCGCCAAGTTTGCGTGCAGGATCTCTTCAGCAGCAGCAGAATGCTAGGAAACAGAGGAGATGCTG GTCCCCGGAGTTGCACCGCCGATTTGTTAATGCATTGCAGAAGCTTGGAGGTTCTCAAGCAACTCCAAAGCAAATTAGAG AACTCATGCAGGTTGATGGCCTGACCAATGATGAAGTGAAGAGCCACTTGCAAAAATACCGACTTCATACTCGGAGAGTT CCGGCTGCAACCGCTAATCAGCCGTGTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAGCACAACGACTCTTCAAA GGGTAGAAGTTCTGTGTCCGGTTCGCCGCAAAGTCCCCTTCATTTAGCTGCAGGTTCCAGGGGAGGGACATCCCCGACCG AGGGTGACAGCATGGAGGATGATGATGATACTAAATCCGAGAGTTATAGCTGGAGAAGTCACATTCACAAACCAGGACAA GTTTATGTATAG
Protein sequence (LotjaGi4g1v0070900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVPAELSLDLRPSFVPKTVANFLYELSTIPRSTDKLSRLHDFLARLEDELRKIDAFKRELPLCMLLLNDAILVLKEES EKCRAHNSPPVLEEFIPLKKEHDQSEENDSKENECRDKKNWMSSVQLWNNTTPRKACDQIPIQHLNYKLDTKKNEEGNSV VAEDPFQSCNVKNGGSAFLPFSTYSSIPVTTVALQAAKEEKEDTVLNRLSLLTPGVKSLREGFGSRGSRSSSSSRAVSSS SPPIVPPSLRAGSLQQQQNARKQRRCWSPELHRRFVNALQKLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRV PAATANQPCVVLGGLWMSQDQHNDSSKGRSSVSGSPQSPLHLAAGSRGGTSPTEGDSMEDDDDTKSESYSWRSHIHKPGQ VYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 391 | 385 | 9.2E-133 | – | |
| PANTHER | 7 | 391 | 385 | 9.2E-133 | – | |
| Coils | 41 | 61 | 21 | - | – | |
| MobiDBLite | 97 | 117 | 21 | - | – | |
| MobiDBLite | 220 | 265 | 46 | - | – | |
| MobiDBLite | 224 | 264 | 41 | - | – | |
| ProSiteProfiles | 259 | 318 | 60 | 15.434 | ||
| Gene3D | 259 | 321 | 63 | 6.8E-28 | – | |
| SUPERFAMILY | 260 | 319 | 60 | 1.43E-18 | ||
| TIGRFAM | 262 | 316 | 55 | 4.1E-27 | ||
| Pfam | 264 | 314 | 51 | 2.6E-7 | ||
| MobiDBLite | 340 | 403 | 64 | - | – | |
| MobiDBLite | 340 | 360 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0070900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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