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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0071300 |
Transcript ID | LotjaGi4g1v0071300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | PIF / Ping-Pong family of plant transposase; TAIR: AT3G19120.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9U2I0|A0A0L9U2I0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0071300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9052672..9053993) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTCGGAAAATGGATCAATCGTTTCTCGTCATGCTGTCGAATCTCCTCCACCTCCACAACTCCCTTGATCCCACCACC GACACTCTCTCCTCCGCCACCTCCGCCACCTCGCTCCTCTACTCCTCCTCCATTGCGCCTCTCCTCTTCTTCACCATGGC CTCCGTTTTGTCCTACGTCGCCTCCACCAAAGCCAACAACGCCTCCGACAACCGCGAAGGCAACCACCGCCGCCAGCCCG CTCCCAACGCCTCCGACTACTCCGTCTCCGCCTTCCGCGCCCTCTCCACCGAGCACATATGGTCCCTCGAAGCCCCTCTC CGTGACGCTCACTGGCGCTCCCTCTACGGCCTCTCATACCCAGTTTTCACCACCGTCGTCGACAAGCTCAAACCCCACAT CGCGCTCTCCAACCTCTCTCTACCTTCCGACTACGCCGTCGCGATGGTTCTCTCCCGCCTCGCTCACGGCCTCTCCGCCA CCACCGTCGCCGCGCGTTACTCCCTCGATCCCTACCTCGTTTCCAAGATCACCAACATGGTCACGCGCCTCCTCGCCACC AAGCTCTACCCTGAGTTCATCAAGATCCCCGTCGGCCGTCGCCGCCTCCTGGAAACCACCCAGGCCTTCGAGGAACTCAC CTCACTCCCCAACATGTGTGGCGCCATTGACACTAGCCCTGTAAAGCTCCGGTCAACCCCCACCTCCAACCCCGCCACCT ACCTCTGCCGCTACGGGTACCCCTCCGTTCTCCTTCAGGTTGTGTCCGATCACAAGAAGATCTTCTGGGATGTTTGCGTT AAGGCTCCCGGCGGCACCGATGACGCGACCCATTTCAGGGATAGTCTTCTCTACCACCGTCTCACCTCCGGGGATGTGGT TTGGGACAAGGTGATCAATGTGAGGGGTCATCACGTTCGGCCTTATGTGGTTGGTGATTGGTGCTACCCTTTGTTGCCGT TTTTGCTGACACCGTTTTCACCCAGTGGGATGGGTACTCCTGCACAGAACCTGTTTGATGGAATGCTCATGAAGGGAAGG TCTGTGGTGGTGGAAGCAATTGCATTGCTCAAAGGAAGGTGGAAGATACTACAAGATTTGAATGTGGGGCTTCACCATGC GCCGCAAACGATTGTTGCTTGTTGTGTGCTGCATAACTTGTGTCAGATTGCGAGGGAACCGGAACCAGAGCTGTGGAAGG AGCCTGATGAGAGTGGACCTCAACCCAGGGTGCTGGATAGTGAGAAGTCCTTTTATTTCTTTGGGGAAAGCTTGAGGCAA GCACTGGCTGATGATTTGCACCAAAAGCTATCCTCAAGATAG
CDS sequence (LotjaGi4g1v0071300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAATCGTTTCTCGTCATGCTGTCGAATCTCCTCCACCTCCACAACTCCCTTGATCCCACCACCGACACTCTCTC CTCCGCCACCTCCGCCACCTCGCTCCTCTACTCCTCCTCCATTGCGCCTCTCCTCTTCTTCACCATGGCCTCCGTTTTGT CCTACGTCGCCTCCACCAAAGCCAACAACGCCTCCGACAACCGCGAAGGCAACCACCGCCGCCAGCCCGCTCCCAACGCC TCCGACTACTCCGTCTCCGCCTTCCGCGCCCTCTCCACCGAGCACATATGGTCCCTCGAAGCCCCTCTCCGTGACGCTCA CTGGCGCTCCCTCTACGGCCTCTCATACCCAGTTTTCACCACCGTCGTCGACAAGCTCAAACCCCACATCGCGCTCTCCA ACCTCTCTCTACCTTCCGACTACGCCGTCGCGATGGTTCTCTCCCGCCTCGCTCACGGCCTCTCCGCCACCACCGTCGCC GCGCGTTACTCCCTCGATCCCTACCTCGTTTCCAAGATCACCAACATGGTCACGCGCCTCCTCGCCACCAAGCTCTACCC TGAGTTCATCAAGATCCCCGTCGGCCGTCGCCGCCTCCTGGAAACCACCCAGGCCTTCGAGGAACTCACCTCACTCCCCA ACATGTGTGGCGCCATTGACACTAGCCCTGTAAAGCTCCGGTCAACCCCCACCTCCAACCCCGCCACCTACCTCTGCCGC TACGGGTACCCCTCCGTTCTCCTTCAGGTTGTGTCCGATCACAAGAAGATCTTCTGGGATGTTTGCGTTAAGGCTCCCGG CGGCACCGATGACGCGACCCATTTCAGGGATAGTCTTCTCTACCACCGTCTCACCTCCGGGGATGTGGTTTGGGACAAGG TGATCAATGTGAGGGGTCATCACGTTCGGCCTTATGTGGTTGGTGATTGGTGCTACCCTTTGTTGCCGTTTTTGCTGACA CCGTTTTCACCCAGTGGGATGGGTACTCCTGCACAGAACCTGTTTGATGGAATGCTCATGAAGGGAAGGTCTGTGGTGGT GGAAGCAATTGCATTGCTCAAAGGAAGGTGGAAGATACTACAAGATTTGAATGTGGGGCTTCACCATGCGCCGCAAACGA TTGTTGCTTGTTGTGTGCTGCATAACTTGTGTCAGATTGCGAGGGAACCGGAACCAGAGCTGTGGAAGGAGCCTGATGAG AGTGGACCTCAACCCAGGGTGCTGGATAGTGAGAAGTCCTTTTATTTCTTTGGGGAAAGCTTGAGGCAAGCACTGGCTGA TGATTTGCACCAAAAGCTATCCTCAAGATAG
Protein sequence (LotjaGi4g1v0071300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQSFLVMLSNLLHLHNSLDPTTDTLSSATSATSLLYSSSIAPLLFFTMASVLSYVASTKANNASDNREGNHRRQPAPNA SDYSVSAFRALSTEHIWSLEAPLRDAHWRSLYGLSYPVFTTVVDKLKPHIALSNLSLPSDYAVAMVLSRLAHGLSATTVA ARYSLDPYLVSKITNMVTRLLATKLYPEFIKIPVGRRRLLETTQAFEELTSLPNMCGAIDTSPVKLRSTPTSNPATYLCR YGYPSVLLQVVSDHKKIFWDVCVKAPGGTDDATHFRDSLLYHRLTSGDVVWDKVINVRGHHVRPYVVGDWCYPLLPFLLT PFSPSGMGTPAQNLFDGMLMKGRSVVVEAIALLKGRWKILQDLNVGLHHAPQTIVACCVLHNLCQIAREPEPELWKEPDE SGPQPRVLDSEKSFYFFGESLRQALADDLHQKLSSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 34 | 34 | - | – | |
PANTHER | 8 | 436 | 429 | 6.5E-198 | – | |
PANTHER | 8 | 436 | 429 | 6.5E-198 | – | |
Phobius | 35 | 58 | 24 | - | – | |
Phobius | 59 | 436 | 378 | - | – | |
Pfam | 219 | 382 | 164 | 2.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0071300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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