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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0074100 |
Transcript ID | LotjaGi4g1v0074100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | LAG1 longevity assurance-like protein; TAIR: AT3G19260.1 LAG1 homologue 2; Swiss-Prot: sp|Q9LJK3|LAG12_ARATH LAG1 longevity assurance homolog 2; TrEMBL-Plants: tr|A0A1J7HBE9|A0A1J7HBE9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9432795..9438418) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGGTCCCACACCCAAAAAAAAAAGAAAAACGAAATTGAAGAGCTGGGAAGAATGATGATTCTCTGAAGAACAAAAGC AGAAGAAGCTGAATTTAAAAAGGAAAGTCACAAACAAACCCTCACCCTCACCATTTTCTTCGTGTTTCCTCTCTCTCGCT CACACTTTCCACCCTCTCCTCTCATCGCAAACTCGAAACTCGAAACTCGATAGAAAACCAGATCTCATTCCAATTCATCG CGATTGGGTGAAAATTCTTCTTCACTGGCCGCATGATCTTGTTCGTTGATTGATTGATTTATAGGGATTTTCTTCCATTG TAGTAGCATGGGTTCCATCTTCAGCGACAATGTAGTGCCGCACGCTTCGCATTTCTCCCTCGCGATCTACTTCGCTTTCG CCTGTTTCGGAGCCAGATTCTTTCTTGACAAATTCGTCTTCCATGTAAGATCGATCCCCTGCTTCATTTCTTCTGATTCT TGATTCGGTTTTGTAATTTGTTAGAAATTTGAGAAGCAAAAAAGGAATGAAATGATGCAATTTAGTTCTTGATTCTGGTT ATTGTTTTCTTTTAAGGTCTTGATTAGTGTTAGTTAAAGGATCTTTAAATGAACCTGTTACTTTGAGTTAATTATGCAAT TGAATGCAGTATTGATTTTCTGTTGTTTCTGTTATATGACTCACAAAATTTATGATGCATATGATGAGTAGTTAACTAGA TTTTTCAATTGATGTATCAATCAGTGTGCATTTTGCTTGTTAATTGTGCAATTGAAAGCTCAAGATTAGGAAAATATTCT AATGCAGCATTGATTTTCTGTTATTTCTGTTATATGACTCACAAAATATATGATGTATATGAGCAGTTAACTAGATTTTC AATTGATGTATCAATCAGTGTGCATTTTGCTTGTTTTCTTTCCTTTCTTTGTTCTTTAGTCGCAATTATTATGGTGAATG GTAATGTCTTGATTCGATAGTTATTTTATGGCTTCGTCTTGTGTCTGCTTTGGGGAAACGGTGCAATTTGATTCGTTGGC ATGATAGAATTTAGTTTCTGATTTGACCAAGAGAACAAGGGGAGGTAGAAAGAAAATTGTAATTAGGATAAGAATAGCAT TTTTCTGAATTCTACATTGGAAAAGAGTGCTGTACACTGTAATGTTTTGCTGTGGCTGGTGAGGTAGAGACACATTTTAG CATATATGATGAGAAGATGGATCTGTTGTTTTGTAAAGAGAGTACCAGAGTTTAGCGAGATTGCATTATGGTGTTTCAGC TTGATAGTTAAAATGTTTTCTAGCAATGCACGTCGGCAAGGATGATCTTATAAGACTTTTAATGGCATAAACATGGCATT TTTCTGTTTCATAAAAGATCCTTTTTTGTGAAGCAACTGTGTCGAATCTTGTGTTGTTGAATTCATTTATTCAGAAAGAA TGTTAGTACCATTTATAAAGTAGATTCCTTAAATATTTTGTGGCTTACAGAGGTTGGCCGTCAGGCTGTTGAGAAGAGGT AGAGCTCCTTCACGGATTACTAAGGAAATGCAAGTAAAGATTGGAAAATGCTCAGAGTCCTTGTGGAAGCTAACATACTA CGCTTCAGTTGAAGCTTGCATTCTTAAAATTACCTACCTTGAACCTTGGTTCACTGATACAAAATTTTACTTCAAAGACT GGCCACATCATGAGTTGAAGTAAGTAATTTAAGTAGCATGATTAATAAATCAGTCTTGTTAATACAAAATTTTCCCCATG TAATGAGTGACATGCATCTATCCTGTCCTGGCAACCTGATCTGTCTGTATATATGTTTATTTGGAAGGCCTCCAGTATTG TCATTATTGATTTTCTTTACATTTTAATACTCTTCATACAGTTCAGATAATTAGAAATATAATATAAAACCAGTTGTGTT TCCACCCAACAACTTAAACTTTTGGGATAGTTGGTTCATGATGACATGATATTAATGTCTATCCTAGTGCAATAAATGAA AAAACTCATCCTGTGATCTTCACTCTTCAGATGTCTAGTTTTGGGTGGGGGGGGGGGGTGTTGAGATCTCACATCCACTA GAGATATAAGTAGAGCCTATAAGAGTTTTGGCAATCCTCATCTTATGAGATAACTTGAGGTTGAGTTATGCCTTGCTCAA AGTCAAAATGGTATCACAGCTTCAATGACCATTCAAGTGGTGTGGAGTTTGGTCCTTGTTAGTTGTAACTCCATTTTTCT AATAAAAAAAATTAATTTCAGCACAAGGCAGATGGACATGTGCATTGTCCAAACTTTTCAACCCCAATGGGGTCTTGTTT GTGGGGGTATGTTAGAAGTATAATGTAAAACTATTTGTGTTTTCACCCAACAACTTGAGCTTTAGCCTTTATGGATACTT TTTTCATGACATAGACCTAAACATGATTTATAGTTCAGAAAACTCTGTTCACAAGCAGCATATATTTGGATATTTCCCTT CAACCTAACAAAATTAGATTATTTATTTGACATGCATGAATAGTTGACGCAACTATTATGGAACAGAGAAATTTGAGTGT GAGAGATAACTTGAAACTGAATATTAGGCCCATGTCCATTTTGGTTTAAGAACTTCAAAGAGACCTAAATTTAGTTTTTG GTTTTGATAGTCAACTGAGTATATGACAAAGTAATTATCAGAAGTTTTCAAGGCAATAGACCGATATATTCCTCCATTGG TCCATTCGTTAATGGGCAATGCAAATAGTTTGTAGTTTATTGGGTATGATTAATTTTACTTCTTACATCTTCTGATGGTA TTTCATTGATTGCTGTTTCGTTCCATTGACAGTGAAGTCAACTCACATGGGGAAAGTTTGTGATTTAGCTTAGGATGAAA ATTACAAGAATATTGTACTTGTTTTAAATTTTCGTAAAACGAAGTTTTCATTCTAAATTTATGTTGCATCCTACTTCATT TCTTATCCCAGGAGTCCCCTAGTGATTTACTACATGTTGCAATGTGGATTCTACACCTATAGCATTGCTGCTATTCTCAC ATGGGAGACTCGAAGGAAGGATTTTTCGGTGATGTTTACTCACCATGTAGTTACTGTTTTACTGATTGGTGGCTCATATC TAACAGGGTAATATCTTGGCCTCCTTTTTCAATTTAAAGAGTATACCATGCCAATTCTAGATAAACCTTAAATTTGGAAC TTGTTTATTTATTTTTGTTCTTTTACCAAAGCATGAAATTTCTCACTAAGTGGCTCATATTTTATGCTCATTACTGATAA GCAAACTCTAATAGGCTCTAAATTGCTTATAACTTATCTGTAATAGAATTTAGGACATGAATGATGTTTTGTCTCTTAAG TATTCATCATGGTTGGTAGTATGGTTAAGACCAACAATTTTTAAGTCTGAATTTTGAAATATTTCTGGATGGTCCTTTAA ACCATTGTAGTTTCCTGAAATTTCATGCTTTACTTTCTTTAATTTACTGGATGGAGATCCGTTCAATTATGCCCTCTTTA GAGTTACTTTTGATTGTATTGAAGAACTTTGGTAATTGTATCATGTGGCCTTCTTATATAATCTTCCATTGTTATAGCAT ATATTAAGCAGCATATATTACTTCTTGAAAATTTCTAGATGCCCTTAGCTATGTTAGAACATGCATCCCAGTTACTCTGA ATTTTGTGCAATACTTATTTGCTGGTGCATTGGTTTACATTTGTAATCTAATGTTATGATTGGAGTTTCTGATTTATGAA ATAAAACTATCCATTTCCAATACTTAATATAACTGTTAAATGTTCAGATACTGTAATATAGCTGATAAGTGCTTGATAGA TCTTGCTTTTTCTGAAATAGTTTAGAGTGTTCTTTTTCTGTCTTCTCTCTTCTTCAACTTTTTCAGGATTTTCCATATTG GGTTGGGTGATTTAGATAATCAAAATGCAAATATGATATTAACATCAAAACAGAGATTATGAAGTGATAACTTACACACA TTGCATTTACAGATTTTTCAGGATTGGCTCCATAATCCTTGCCCTTCATGATGGAAGTGATGTATTCTTAGAAGCTGCCA AAGTTTTCAAGTATTCTGGAAGAGAATTTGGTGCAAGTGTGTGTTTTGCATTCTTTGCGATTTCATGGCTCATACTACGG CTAATTTTCTTTCCATTTTGGGTTATTAAAGCAACAAGGTTTGTCATTGTATTTTATTGAATTATTTTGACTTTATTTTG AGAGGAACTTATTGATCATATTCTCATCACTGGGTTTTCATTTTCCAGCATTGATCTTCAGAAGGTCTTAAACCTGTCAC AGAGTTATGACACGTTACTTTACTATATGTTTAATACACTGCTCATCATGCTGCTTATCTTCCATATATACTGGTGGATG CTCATATGTGCTATGATCAGTAGACAGCTGAAAAATAGAGGAACAGTTGGTGAGGATATTAGATCAGGTAAGCAAGTTTC ATCAATACAGAATTACAGATTGAGTTATGAGTATTCTATATTCTAATATTCTTTTGTTCAGGAACCATTCCTCTATCAGG GATATCCTCCGTTGTTATTCTTACTCCCTCCCACTATTTAAATTATAAATAAAAGTTTCATGAAAATCTGAATTCTGATA ATATGAGCTTGCCTGGTGCAGAATATTAGACCTGCTTATGTTAGATATATAATGATCAAGGATCAAGATTAGGGGTATAG AGCTAAACCGCTAAACATTCTTACGATCTATCCCTTCCTGTTTATCACATGCTTATGATTATTCTACTATCATCAATCAA TGTATTAGATTGGTTTGAATGTTTGATCATCATACATAATCCTTTATTGCCACTTGTTATGATCACAAATGTGTCTAGTT CTTGCACTCAGATTCCAGCATCTACAGATCTTTACTTTTCATTATCATATCTGGTAATTTTGTTCTTTATTTTAGCTGAG GGAATCTTCTTCTTTTTTTTCCAGATTCAGACGATGATTGAATAGATGAAGGATTTTGTTGAGTTTTCTTTGTTCTTGCT GTTCGGTGGTAGCTCTGCAGATACTGCTGTTGACTTGTCCGTAGATTTCTAGGAGTTAAGTTGGTTACTGCAACCAATTG AAGAAGGATAAACTTTTGTTAGTTTCAAATTTTTCATTGATTACTGGGTAGAAAGGATGTAGAGGTATCCTCAGGTATAT TCTATATTCTAATATTTTTGCTGTATAAATGATAGGCATTCCTGTATAATTGTTTTTTCCCCTAAACATACCCGTTTAGT TAACCAAAAGTTGAATGAAATGTAGCGAATAAGGAGAATGAAGGGGAAATTTTTTCTTGCAATGATTACACTTTTTTTGT CAATGATTACTCTGGATGTGGCAATTGTGACGTTACTTGTTATCCATATCACCTAGTGAAATGTTATAAAGTAGAGATTG AAATCAAAGATGGAAAAAACCATGTAAATTAGATGTTAGAGATCAAAATCAAATCTAACTATAATGAGGATAAAAAAAAC TTATTTAAGCCTTTAGTTTATAGGGTTGTCTAAAATATGTACCAAAAAAAAATGTACCAAAAAAATAGGGTTGTCTAAAT GACTCATGTGAGTTACTAACCCAC
CDS sequence (LotjaGi4g1v0074100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCCATCTTCAGCGACAATGTAGTGCCGCACGCTTCGCATTTCTCCCTCGCGATCTACTTCGCTTTCGCCTGTTT CGGAGCCAGATTCTTTCTTGACAAATTCGTCTTCCATAGGTTGGCCGTCAGGCTGTTGAGAAGAGGTAGAGCTCCTTCAC GGATTACTAAGGAAATGCAAGTAAAGATTGGAAAATGCTCAGAGTCCTTGTGGAAGCTAACATACTACGCTTCAGTTGAA GCTTGCATTCTTAAAATTACCTACCTTGAACCTTGGTTCACTGATACAAAATTTTACTTCAAAGACTGGCCACATCATGA GTTGAAGAGTCCCCTAGTGATTTACTACATGTTGCAATGTGGATTCTACACCTATAGCATTGCTGCTATTCTCACATGGG AGACTCGAAGGAAGGATTTTTCGGTGATGTTTACTCACCATGTAGTTACTGTTTTACTGATTGGTGGCTCATATCTAACA GGATTTTTCAGGATTGGCTCCATAATCCTTGCCCTTCATGATGGAAGTGATGTATTCTTAGAAGCTGCCAAAGTTTTCAA GTATTCTGGAAGAGAATTTGGTGCAAGTGTGTGTTTTGCATTCTTTGCGATTTCATGGCTCATACTACGGCTAATTTTCT TTCCATTTTGGGTTATTAAAGCAACAAGCATTGATCTTCAGAAGGTCTTAAACCTGTCACAGAGTTATGACACGTTACTT TACTATATGTTTAATACACTGCTCATCATGCTGCTTATCTTCCATATATACTGGTGGATGCTCATATGTGCTATGATCAG TAGACAGCTGAAAAATAGAGGAACAGTTGGTGAGGATATTAGATCAGATTCAGACGATGATTGA
Protein sequence (LotjaGi4g1v0074100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSIFSDNVVPHASHFSLAIYFAFACFGARFFLDKFVFHRLAVRLLRRGRAPSRITKEMQVKIGKCSESLWKLTYYASVE ACILKITYLEPWFTDTKFYFKDWPHHELKSPLVIYYMLQCGFYTYSIAAILTWETRRKDFSVMFTHHVVTVLLIGGSYLT GFFRIGSIILALHDGSDVFLEAAKVFKYSGREFGASVCFAFFAISWLILRLIFFPFWVIKATSIDLQKVLNLSQSYDTLL YYMFNTLLIMLLIFHIYWWMLICAMISRQLKNRGTVGEDIRSDSDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
PIRSF | 3 | 287 | 285 | 1.0E-70 | ||
PANTHER | 10 | 285 | 276 | 2.8E-96 | ||
PANTHER | 10 | 285 | 276 | 2.8E-96 | – | |
Phobius | 12 | 33 | 22 | - | – | |
TMHMM | 15 | 33 | 19 | - | – | |
Phobius | 34 | 112 | 79 | - | – | |
SMART | 64 | 271 | 208 | 7.8E-62 | ||
Pfam | 66 | 263 | 198 | 1.8E-37 | ||
ProSiteProfiles | 66 | 271 | 206 | 19.7 | ||
TMHMM | 111 | 133 | 23 | - | – | |
Phobius | 113 | 133 | 21 | - | – | |
Phobius | 134 | 147 | 14 | - | – | |
TMHMM | 148 | 170 | 23 | - | – | |
Phobius | 148 | 172 | 25 | - | – | |
Phobius | 173 | 192 | 20 | - | – | |
Phobius | 193 | 219 | 27 | - | – | |
TMHMM | 197 | 219 | 23 | - | – | |
Phobius | 220 | 238 | 19 | - | – | |
TMHMM | 239 | 261 | 23 | - | – | |
Phobius | 239 | 263 | 25 | - | – | |
Phobius | 264 | 287 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0074100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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