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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0075400 |
| Transcript ID | LotjaGi4g1v0075400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0L9VBN6|A0A0L9VBN6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9662686..9664465) extracted from Lotus japonicus Gifu genome v1.2.
GCCGAAATAGAAGGTTCATTCATCATAGTACGATTGGAACCAATCATCATTAGTGTGTCAGTCATTCTTCTGACTCACTC ACTTTACCTATTCCCAATCACCACCTACCCAACCCAAACCTCGATTTCCCCAAAACCGCCGCCATGGAATCTCGCAAATT GGCGGCGCTGCTTTCCTCCCTTGTCTCTCAGCTCATCCTCCTCCTCCTCCTCATTTTCCCTCCCAATTCCACCGATTCCA ATTCCAATCCCAATCCCAATTCCGCCGATTCCACTTTCCCCTTAATCCACCACTTCTTGTTCTCCCAACAAACCGCCGCA ACCGCCACCCTCCTCTCCCGCAAACGCAAACGACACGGCGGCGAAAACCAAAACCCGCCGCCGCGAAGCCCTGACTGGTT CCGCGCGTCTTTCCTCATGACCTCCTCCACCTTCGAGTGGCTCTCCGGCCTCCTTGAGCCTCTTCTTGATTGCCGTGACC CTGCTGACCTTCTACCGCTCAACCTCTCCTCCGGCGTCCGCCTCGGTATCGGCCTCTTCCGCCTCGCCACCGGCTCCGAC TACGCTGACATCTCCGACCGATTCGGCGTCTCTGTCCCCGTCGCTAGATTCTGCGTCAAGCAGCTTTGCAGGGTTCTCTG TACCAATTTCCGATTCTGGATCTCCTTCCCTGGACCTAACGACCTTCCCTCCGTTTCCCATGGCTTTGAGTCCCTCTCCG GGCTACCCAATTGCTGCGGCGTCGTTTTCTGCTCTCGCTTCGATGTCTCCCCTTCCGCCGCCACAAAAAACGCCCAAAAC CACCGTGTGGCTGCCCAGATAGTCGTCGACTCCACATGTAAGATTTTGAGCATTGCTGCGGGGTTTTTGGGTGAAAAGAG TGATTCCCAGATTCTTAAGGCATCAACGTTGTGTGAGGATATTGAAGATGGTACTCTCTTGAATGCTCCTTCTACTGATA ATGCAGGGGTGAATCAGTATTTGGTTGGTGATTCTGGGTACCCTTTGCTTCCTTGGCTGATGGTGCCTTTTGCGGAGGCT GCTCCGGGTTCTGTTGAGGGGAATTTCAATGAGGTTCATGGCCTTATGCGCCTTACGGCGCTTAGGACTGAAGCTAGCTT GAGGAATTGGGGTGTTCTGAGTAAGCCTGTTAAGGAGGAGGTGAAGATGGCTGTGGCTTATATGGGTGCTTGTTCTATTC TTCATAATAGTTTGTTGATGAGGGAGGATTTTTCTGCTTTGGCTACTGGTTTTGACTTTGATTATCATGAGATTCACCCT CAAACACATGATCATGGCCAGCCATGTGTGTCGGAGGATGATCCCGTCGCGAATAAGGCTTTGGTTATGAGGAATACTTT GGCTACCATGGCGAAGAAAATTAGTTAGTGCACATTTTCGTTTGCATTGGACAAAAGCAAAATCTAAGAGAAGTTGTTTC TGTCTAGTGGTTTTCAAACGAATTTACAAACATACTTTTAGTTCAAATTCTTAATTGAGGGTGGGGAAGCTATATTGATT AATGATTATTTTTATTGATGATGCTCCAATATGAGTGTAATTTTTCAGCTTCCACTTTTGTTTGTGTGGATGCGAGAATG TAAATACCATAACTCTCTTGATTGAGCATTGTTAGCTATTTTTTGCGGATATTCACATTGTTGATTGCAAGTCTTTGGAC CCCTGGCTTTGATTTGGACGGATATTATCAAATATTGTTTTTGTGGTTCCTGAGAACTAATGAGTCTGACCATTAAAGTT TCTGTTATGTATGGTTTTAT
CDS sequence (LotjaGi4g1v0075400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTCGCAAATTGGCGGCGCTGCTTTCCTCCCTTGTCTCTCAGCTCATCCTCCTCCTCCTCCTCATTTTCCCTCC CAATTCCACCGATTCCAATTCCAATCCCAATCCCAATTCCGCCGATTCCACTTTCCCCTTAATCCACCACTTCTTGTTCT CCCAACAAACCGCCGCAACCGCCACCCTCCTCTCCCGCAAACGCAAACGACACGGCGGCGAAAACCAAAACCCGCCGCCG CGAAGCCCTGACTGGTTCCGCGCGTCTTTCCTCATGACCTCCTCCACCTTCGAGTGGCTCTCCGGCCTCCTTGAGCCTCT TCTTGATTGCCGTGACCCTGCTGACCTTCTACCGCTCAACCTCTCCTCCGGCGTCCGCCTCGGTATCGGCCTCTTCCGCC TCGCCACCGGCTCCGACTACGCTGACATCTCCGACCGATTCGGCGTCTCTGTCCCCGTCGCTAGATTCTGCGTCAAGCAG CTTTGCAGGGTTCTCTGTACCAATTTCCGATTCTGGATCTCCTTCCCTGGACCTAACGACCTTCCCTCCGTTTCCCATGG CTTTGAGTCCCTCTCCGGGCTACCCAATTGCTGCGGCGTCGTTTTCTGCTCTCGCTTCGATGTCTCCCCTTCCGCCGCCA CAAAAAACGCCCAAAACCACCGTGTGGCTGCCCAGATAGTCGTCGACTCCACATGTAAGATTTTGAGCATTGCTGCGGGG TTTTTGGGTGAAAAGAGTGATTCCCAGATTCTTAAGGCATCAACGTTGTGTGAGGATATTGAAGATGGTACTCTCTTGAA TGCTCCTTCTACTGATAATGCAGGGGTGAATCAGTATTTGGTTGGTGATTCTGGGTACCCTTTGCTTCCTTGGCTGATGG TGCCTTTTGCGGAGGCTGCTCCGGGTTCTGTTGAGGGGAATTTCAATGAGGTTCATGGCCTTATGCGCCTTACGGCGCTT AGGACTGAAGCTAGCTTGAGGAATTGGGGTGTTCTGAGTAAGCCTGTTAAGGAGGAGGTGAAGATGGCTGTGGCTTATAT GGGTGCTTGTTCTATTCTTCATAATAGTTTGTTGATGAGGGAGGATTTTTCTGCTTTGGCTACTGGTTTTGACTTTGATT ATCATGAGATTCACCCTCAAACACATGATCATGGCCAGCCATGTGTGTCGGAGGATGATCCCGTCGCGAATAAGGCTTTG GTTATGAGGAATACTTTGGCTACCATGGCGAAGAAAATTAGTTAG
Protein sequence (LotjaGi4g1v0075400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRKLAALLSSLVSQLILLLLLIFPPNSTDSNSNPNPNSADSTFPLIHHFLFSQQTAATATLLSRKRKRHGGENQNPPP RSPDWFRASFLMTSSTFEWLSGLLEPLLDCRDPADLLPLNLSSGVRLGIGLFRLATGSDYADISDRFGVSVPVARFCVKQ LCRVLCTNFRFWISFPGPNDLPSVSHGFESLSGLPNCCGVVFCSRFDVSPSAATKNAQNHRVAAQIVVDSTCKILSIAAG FLGEKSDSQILKASTLCEDIEDGTLLNAPSTDNAGVNQYLVGDSGYPLLPWLMVPFAEAAPGSVEGNFNEVHGLMRLTAL RTEASLRNWGVLSKPVKEEVKMAVAYMGACSILHNSLLMREDFSALATGFDFDYHEIHPQTHDHGQPCVSEDDPVANKAL VMRNTLATMAKKIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 414 | 382 | - | – | |
| PANTHER | 84 | 356 | 273 | 1.3E-38 | – | |
| PANTHER | 84 | 356 | 273 | 1.3E-38 | – | |
| Pfam | 218 | 355 | 138 | 2.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0075400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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