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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0076000 |
| Transcript ID | LotjaGi4g1v0076000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT3G19380.1 plant U-box 25; Swiss-Prot: sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25; TrEMBL-Plants: tr|I1JE03|I1JE03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0076000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9731099..9732843) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGTGGTTGTTTAGAACCATTAGATTTGGGGATTCAGATCCCTTACCACTACAGGTGCCCAATCTCACTTGAGCTCAT GCGTGACCCGGTAACGGTGTGTACCGGTCAAACCTACGACCGATCCAGTATCGAGTCGTGGGTTAACACCGGTAACACCA CATGCCCGGTCACGCGTGCGCCTCTAACCGAGTTCACACTAATCCCAAATCACACCCTCCGACGCCTCATCCAAGAGTGG TGCGTCGCCAACCGCGCTTTCGGCGTGGAGCGAATCCCCACTCCCAAACAGCCAGCAGAACCCGCTCTCGTCCGCTCCTT GCTCAACCAAATATCCTCCGCTTCAGCTTCAACTCACCACCGCCTCAACTCGCTCCGACGACTCAGACAACTCGCTCGTG ACTCGGACTACAACCGCTCACTCATTGCCTCCCACGACGTCCGCCGCATCGTTCTCCGGATCTTCGATAACCGCTCCTCC GATGAGCTGAGTCACGAATCGCTCGCTCTACTCGTCATGTTTCCCCTCGCCGAGTCAGATTGCGCCGCCATCGCCGCCGA TTTGGATAAAATTGGTTACCTCTCGGTTTTACTCTCTCATCAATCTCTCGACGTCCGAGTCAACTCAGCCGCGCTCATCG AGATGGTCGTCGCCGGGACTCACTCGGCTGACCTCCGATCTCAGGTGAGCAGCGTCGAAGGAATCCACGACGGCGTGGTG GAGATTCTCCGAAGCCCGATCTCGTACCCGCGCGCGCTCAAGGTCGGCGTAAAAGCTCTCTTCGCGCTGTGCCTGGTGAA GCAGTCACGGCAGAGAGCGGTTGCCGCCGGAGCGCCGGCGGTGCTAATCGACCGTCTCGCGGACTTTGAAAAGTGCGATG CGGAGAGGGCTTTGGCGACGGTGGAGCTCCTCTGCCGGGTTCCGGCGGGTTGTGCTGAGTTCGCCGGCCACGCGCTGACG GTGCCGATGCTGGTGAAGATAATATTGAAAATATCAGACCGTGCGACGGAGTACGCCGCCGGGGCGCTTCTTTCGCTGTG CTCGGAATCGGAGCGGTTACAGATGGAGGCGGTGGCGGCGGGGGTGCTGACTCAGCTTCTCCTCCTTGTGCAGAGCGATT GCACGGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAAT TCGGACGATTTTGCGTGCAGCCAGCTTGTGGTGGTGCCTTTTTGAGTTTCACCCTCTCTTTTTTTTTTCTTGTAATAATT AATTAATCTCAATTATTTGTTAGTGGAAAAATTATTTAGATTTCAGGAGGAAAAAAAAAAATTTCATCAACTGTGAATTA ATTTGGAGCTTAGAATTAATTTCTGTATTTAATTTTTATTTTGTATGTAAGAATTAATATTGTGATGAGCAAGACAAAGT GTTTCATCACAGGTTGTTGTAATTTTGTAAAATGGAAAATAGAGCTAACTTTTTATCTTGTTTTTTCTTTGCTTTATTAC TCTCTTTTGTTAGAAAGTGTTTTAGGATTTCATTGTTGTAGTTGAATTGGTTGGTTCATGGTTGGTGCCTGGGTGTATAT TTGAAATTTGCTTTGCATTTGCATGTGGGAATCTTGTGGGTATTATTAGGTGGAAAGAAAACATTTACTGGCATTTGGTG AAGTACACGTTTCTGATAGATCCATAGATGGAAGTGTTTTTGACTTCCAAGGAACTTCATTTTGA
CDS sequence (LotjaGi4g1v0076000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGGTTGTTTAGAACCATTAGATTTGGGGATTCAGATCCCTTACCACTACAGGTGCCCAATCTCACTTGAGCTCAT GCGTGACCCGGTAACGGTGTGTACCGGTCAAACCTACGACCGATCCAGTATCGAGTCGTGGGTTAACACCGGTAACACCA CATGCCCGGTCACGCGTGCGCCTCTAACCGAGTTCACACTAATCCCAAATCACACCCTCCGACGCCTCATCCAAGAGTGG TGCGTCGCCAACCGCGCTTTCGGCGTGGAGCGAATCCCCACTCCCAAACAGCCAGCAGAACCCGCTCTCGTCCGCTCCTT GCTCAACCAAATATCCTCCGCTTCAGCTTCAACTCACCACCGCCTCAACTCGCTCCGACGACTCAGACAACTCGCTCGTG ACTCGGACTACAACCGCTCACTCATTGCCTCCCACGACGTCCGCCGCATCGTTCTCCGGATCTTCGATAACCGCTCCTCC GATGAGCTGAGTCACGAATCGCTCGCTCTACTCGTCATGTTTCCCCTCGCCGAGTCAGATTGCGCCGCCATCGCCGCCGA TTTGGATAAAATTGGTTACCTCTCGGTTTTACTCTCTCATCAATCTCTCGACGTCCGAGTCAACTCAGCCGCGCTCATCG AGATGGTCGTCGCCGGGACTCACTCGGCTGACCTCCGATCTCAGGTGAGCAGCGTCGAAGGAATCCACGACGGCGTGGTG GAGATTCTCCGAAGCCCGATCTCGTACCCGCGCGCGCTCAAGGTCGGCGTAAAAGCTCTCTTCGCGCTGTGCCTGGTGAA GCAGTCACGGCAGAGAGCGGTTGCCGCCGGAGCGCCGGCGGTGCTAATCGACCGTCTCGCGGACTTTGAAAAGTGCGATG CGGAGAGGGCTTTGGCGACGGTGGAGCTCCTCTGCCGGGTTCCGGCGGGTTGTGCTGAGTTCGCCGGCCACGCGCTGACG GTGCCGATGCTGGTGAAGATAATATTGAAAATATCAGACCGTGCGACGGAGTACGCCGCCGGGGCGCTTCTTTCGCTGTG CTCGGAATCGGAGCGGTTACAGATGGAGGCGGTGGCGGCGGGGGTGCTGACTCAGCTTCTCCTCCTTGTGCAGAGCGATT GCACGGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAAT TCGGACGATTTTGCGTGCAGCCAGCTTGTGGTGGTGCCTTTTTGA
Protein sequence (LotjaGi4g1v0076000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNHTLRRLIQEW CVANRAFGVERIPTPKQPAEPALVRSLLNQISSASASTHHRLNSLRRLRQLARDSDYNRSLIASHDVRRIVLRIFDNRSS DELSHESLALLVMFPLAESDCAAIAADLDKIGYLSVLLSHQSLDVRVNSAALIEMVVAGTHSADLRSQVSSVEGIHDGVV EILRSPISYPRALKVGVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATVELLCRVPAGCAEFAGHALT VPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGN SDDFACSQLVVVPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 408 | 405 | 1.0E-181 | – | |
| PANTHER | 4 | 408 | 405 | 1.0E-181 | – | |
| SUPERFAMILY | 12 | 90 | 79 | 9.64E-30 | – | |
| Gene3D | 13 | 87 | 75 | 9.6E-30 | ||
| ProSiteProfiles | 13 | 87 | 75 | 42.532 | ||
| Pfam | 14 | 85 | 72 | 3.7E-21 | ||
| SMART | 17 | 80 | 64 | 1.3E-33 | ||
| CDD | 18 | 59 | 42 | 9.98425E-25 | – | |
| Gene3D | 94 | 400 | 307 | 5.8E-15 | ||
| SUPERFAMILY | 103 | 389 | 287 | 1.77E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0076000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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