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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0076300 |
| Transcript ID | LotjaGi4g1v0076300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G34040.1 RING/U-box superfamily protein; Swiss-Prot: sp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR2; TrEMBL-Plants: tr|I1KM15|I1KM15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0076300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9756192..9761382) extracted from Lotus japonicus Gifu genome v1.2.
CACAGTTAGACACATCACACCCTCTCTCTACCCCTTTAATCACTCCCTATCTCTCTATATTTTTTTATTTTTATTACAAC CTTCTTTGTTCGGTAATAAAAATCAAAATAAAATCTAAAACAAAAAGAGATAAAGAACCTAAATAAAATAAAAAGATAAA TACATTCAGTAAATTGAACGAACACAGACAAAAACAGGAACGAGAAGAAGAACAAAGAAAGAATCACCGAAAATCCTCTT CTCTCTCAATCCAATCTCAACCTCTTCCTCTTCCTCATCAATCTTCAGATCCCGCTCTGGTAACTATTTCTCTGATTCCT TTTCTTCATCAATGCTCATGTTCATCGTTGTTATTCTGCATCGAAATTCGTTTTTTTCATTAATTGTTTTGGGTTGAAAA GATTTTCGAATTCCAGGTTTTCATCTGGATGTTCTTACATCAATCGGTTTTGGGGTTGAGGATCGCGATCACCCATTAGG TTTTTTTCAATTTTCCCTTTAATTTTGCTTATTTTCCCCCTTTTTTAACCCTACCCTTTTGAAATTTATGATCGATTTGA TGGCATGCTTTCTGTTTCTTCTAATTTGGATTTGATTTTTTGATTTTTTTTGAGCTTTGTTTGGTTCATTCTGTTGGATT GGGGATTTTATTTAGCTTGTGTTTGAATTGGGCATTAGAGCAATCTAGATTCTGGGGTTGTAAAGTTTCAATCTTTTCAA TTTTAACCTGATTAGTTTTGAGCTCATTCATGCAGTATCTTAGCTTTTTGTGCCTTTGGATGCAGACATCATGTTGTGTT GTTCTGTCCTCTTTGGTGTGGGTGAGAAATCAGGGGAGATGAGAAGCTTTATCAGAGCATTCTTCTTACAGCTTTAGTTT TTTTGAGATAGTTTGTTATTGACATTGTGTTGATGTTGTCTCTTAAACCAATTTGACTGATATACATGATATATTTCCTG CATTCATCTCTCTTGTTATGTACTTCCACCGAACATCCTTCCAAGCTCCTGTTAATCTCATTAAAGTAAGATTGTTACTT GTAAAAAATGTAGCATTTGTTACCAAACTTAAAGCTCAATCCACTGGAGAAAAATACAGATTTGGGCTTCTTGGGCTAGT TCTATCTGATTTATGTTGTACTTGTGCAGTTTTAAGTTTTGCGGCAAACTTTTTTTTTACCCTCTTGTGCCTATATATAC CTTACATCTTGTATTGCATTGATGAAATAGCTACTTTTTGACTGTGTATGGCAAAGCATGTTATACTCTTTAGTTTCACA GCCAAAGAGATCATTTGTAGGTTATATGTGTGAGCATCGCTTTCGTGCACCTTACTCATGGCTTGAGAATTGAACAACTT CTATGTTTTTTCTGTTCATTAATTTAGGTGGGAGAGCTTGATTCTGATGCAAGGTCAAAGGAGGACTGCTGGGTCCTTCC CAGCAATTGTTAGCATGATGCAAGGGCCTGGTTCTAGTGGCACTGATATGAATAACCAGTCTTCCTTGAATCATGTGCAA AATGCAGTAGATTTCCGGTTGTCAAATTATAGGGGGTCTACTGGTGAGACTGCACATTTACGTGGGACTGGTCCTAATGT CAGCTTCAGTGGCTGGAATAATGGAGAATCTAGTTCTGGACTGAATCTTATCAACCAAGTCAATGATGAAGGTCTAAAAT CAGAACATGGGATGTCTTCTTTATGTGGTACAACTGCTGATAATGGTCTCAGACCTGAGGAAAGGCAATTGCATGTGAAT CAATCTAGAATTCACCATTCCTTTTTGCAGGGTTCCAGCTCTAATCATATATCCCAGAATATTAGTCTCGATATGGGGCA CATTCCTAACACTGCTGATCGTGGGAAGGGCATAGAAACTTCTAGTGCTGCTCATGACTGCAATCCTTGTGAATTAGGTA GAGAGAAGGCACCATTTGGCATTGCTTCATACAATCATATAGGAGCTTCATCTGAAAGTCCTGGATACATGGCTTGGGGA GATAGTGCCAGTTCATGGGGTCCTTCCTGCAAGAGAAAGGCCCTCGAAGGTAGTTCTGGGCATCTGTGTACTGAAGGAAG CTCAAGCTCTCTTGTGCAAACGGAAAATGGTTATTGGCCTACTGATCCTGTTGATCTTAATGCTTCCTGTAGCTTAAGTG ATTCTACACCTTTAGAGGATTTTTCTGTTATTAGCCCTCCATTACAACAGAACACACGAAATGGGATGAGGCAAGAAGCT TCCAATGCATTTCCTTCCATGATAAGTGTTGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCG ACTACAGCATCAGGAATCTGGACCTCTCAATTTAACATCAACTGGGAGTGGTATACTTCATAATCATTCTTCTGCACATC AAATACCTGGCTCTCTCTTATTTAATGATTCCTTGGAATTGAGGTTAACAGCTGGAGCAACTGCTGCTAATTCTGGTGCT GTTCAGAACCAGACACCTGCCCTGCACATGCATCCTACTCCTTGGAATAGAGCTGCTAATCCTAGAGCTTCCAGAGCTTC AAGTTCTTATAGCTCTGGAGAAAGAGCAGTACGGGAAGATCTTAATTTAAGAATCTTTCCAAGAGATTCTACTGACCACT TCATGAATGTGCCTGCATCTTCAGGACTTGAACCTATGGGTTGGCATGCATCTTCTAGTAATGTGAACAATGCTGGAGGT ATCCCTCCTACATCCTGGACTGGATCTAGTTTAAATGTCCATTCATTACCTAATCCCAACTGGACATTTAACCATGATGT CCCGGCGGAAAATCTGCAGAGAGTGTCAGAGTTGAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCACCTGGTACTC ATCACAGCCATTCTATTTCTACCCCCTCTACTTCTGGTCCTCCTTCATCTTCTCAGGGTTCTAGCAACAATCAACCATAT CGAAGAACAGCATTTTCAATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTCCTCATTCACTGCGAGCATTAGCCTTTGA TAGTGAGGGGAGACGTCGACTAATATCTGAGGTATTATTACTACTTGTTTGACTATTTAAAAATATTTTGCACTAATACG TATTTATATAGCCAGGGTTCAGAATTCAGACAACAGGAAATATGTATTACAGATTCTTACATTGCTTGGCAATGCTTATG GTGCTGATGTTCATCTAATTTCTGTTTGCTGCTTCATCCTTTCATAATTTTTCTGTTTCCTTATCAGCAGAATAACTTAC TTTTTAGCAGCCAACTGACAAGCATTTTATTCAATTGAAGTTTAATGAAGAAGGTTCTTCCACCATTGTCCTACCTGAAC TAACTTTGTAGTTTTTCCGTGTTGCAGATTCGCCAAGTCTTGACTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGT TCGAAATTTAGTGTCTAAATATATCTTCGCAGTTTATGACTTGCATACTTGTGTTGTGATTGGAGGTAGAAACTCATCTT CGGATGAATACTCATGGAATAATTGGGCTAAAAAGAATTTGAAACTATTATAACCACTAGACCCCGTAAATTGACTTAGC TATACAGAAAATGTAACAAAAAATGCTGGCTATATCCTCTATTTGTACATGTTCTGAGGTATTTTTTCTCTCATTGTCAT AAATTGACTTAGCTAAAGGGAAAATGCAACAAAAAATGCTGGCTATATCCTCTATTTGTACTTTTTTTCTCTCGCTGTTC TCAAGAAATTGGCATTTTTACCTATAGAGTGTAGTTGCCAAAGAAATATTGGCTTTTGAAGCAAGGACAGGCCTGTTAGC TTGCACAATGTTCTAGTCGACTTTGCAATACTCTGGACTGTTGAGAATGCTATCCTAACTTTTTCCTTTGACACTTGTGA AATGTCAGGATTATATGGTCTTTGACCCTTTCCTATATCATGGCTTAGCTGAAATGCATGACCGGCACAGAGAAATGCGC CTTGATGTTGATAACATGTCTTATGAGGTAAAAGAGAATATATGGTACTCTCATCCATCAGCTATGCTGTTGTCATTTCT TACTGACTTAACTGGGATTGCAGGAACTATTGGCATTGGAAGAGCAAATAGGAGATGTGAGCACTGGATTGAGTGAGGAT AACATTCATAAGTTAATGAAACAGCGGCTTTACATTTCTTTCATGGCTGAATCATCATCTGATCCTGAACCTTGCTGTAT CTGTCAGGTATGAGTAATAGCAGTCTCAGCTAGTAAGAGTATTGAGAGGACACGTAAACAGTATAATTGGGCGTCTGGTT TCATATGAGCTTGATACTCACTTGCATTTTTCTTGTTCTTCTATGATGGCAGGAGCAATATGCTAATGGAGAGATTATTG GTTCACTAGATTGTGGGCATGAGTTCCACACTAAGTGCATCAAGCAATGGCTTGTTCAGAAGAATCTGTGCCCCATTTGC AAAACAACAGCCTTAGCTACATGATAAGGAGCAAGTCTATTATCTGAACCTTGGAAGAAAATTTCCTTGCTCTCTTACAT CATCCTTCTATCAGTTTGGTCTTTCCCTGGTTCTATTCAAACTTATTTTACTTTATGAACTTCCTTGTTCTCAATAGGAC AGGACCTCTCATCTGTCAGGATTGGGAATGAAAGCATAACAAAAAAAAAAAAAAAAAAGTAAACAGTAAACAGAAAAATT GGTGGGTTGAACTACAGTAGAGTATCATTTATACTGTCGTCGTGGACAAATTACATTTCATTTATGATGGCTGCAAGCAC TTGGATTTTATTAAATTTGATTATAAATTTAAGACTTTTGTTGCTGAGTAGATTACATTGTAGACGATGTAGATAGTCAC CCTAGTTGATTCACTTTGTTTCACATATAATCTGATTGGATGTTAGAAGAAATCGAGAGGAAAGAAAAATAAGAGAAAAT TGGTTGATGAATAGGAAAAAAGTCTAAAAATCTCTCTGTTTATGTGTTTTATACAAAGTAGGGGTGTACAAGACCCGGCC TCACCCGCCAACCCGGCCCGACCCAAGCTTTTAGGGCCGGGTTGAACCCGGCCCGATCATTAAAAGAGACCGGGTTCGGG TTGATCTTTGAGTTACCCGACTTCGGGTAGGGTCGGGTTCGGGTTAACACTCGGGTCACCCGGCCCGTCCC
CDS sequence (LotjaGi4g1v0076300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGTCAAAGGAGGACTGCTGGGTCCTTCCCAGCAATTGTTAGCATGATGCAAGGGCCTGGTTCTAGTGGCACTGA TATGAATAACCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAAATTATAGGGGGTCTACTGGTG AGACTGCACATTTACGTGGGACTGGTCCTAATGTCAGCTTCAGTGGCTGGAATAATGGAGAATCTAGTTCTGGACTGAAT CTTATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGATGTCTTCTTTATGTGGTACAACTGCTGATAATGG TCTCAGACCTGAGGAAAGGCAATTGCATGTGAATCAATCTAGAATTCACCATTCCTTTTTGCAGGGTTCCAGCTCTAATC ATATATCCCAGAATATTAGTCTCGATATGGGGCACATTCCTAACACTGCTGATCGTGGGAAGGGCATAGAAACTTCTAGT GCTGCTCATGACTGCAATCCTTGTGAATTAGGTAGAGAGAAGGCACCATTTGGCATTGCTTCATACAATCATATAGGAGC TTCATCTGAAAGTCCTGGATACATGGCTTGGGGAGATAGTGCCAGTTCATGGGGTCCTTCCTGCAAGAGAAAGGCCCTCG AAGGTAGTTCTGGGCATCTGTGTACTGAAGGAAGCTCAAGCTCTCTTGTGCAAACGGAAAATGGTTATTGGCCTACTGAT CCTGTTGATCTTAATGCTTCCTGTAGCTTAAGTGATTCTACACCTTTAGAGGATTTTTCTGTTATTAGCCCTCCATTACA ACAGAACACACGAAATGGGATGAGGCAAGAAGCTTCCAATGCATTTCCTTCCATGATAAGTGTTGCGGAAAATGTGGAAA GGCCTCTAAGAAACTTTGATAGGAGAATAACCCGACTACAGCATCAGGAATCTGGACCTCTCAATTTAACATCAACTGGG AGTGGTATACTTCATAATCATTCTTCTGCACATCAAATACCTGGCTCTCTCTTATTTAATGATTCCTTGGAATTGAGGTT AACAGCTGGAGCAACTGCTGCTAATTCTGGTGCTGTTCAGAACCAGACACCTGCCCTGCACATGCATCCTACTCCTTGGA ATAGAGCTGCTAATCCTAGAGCTTCCAGAGCTTCAAGTTCTTATAGCTCTGGAGAAAGAGCAGTACGGGAAGATCTTAAT TTAAGAATCTTTCCAAGAGATTCTACTGACCACTTCATGAATGTGCCTGCATCTTCAGGACTTGAACCTATGGGTTGGCA TGCATCTTCTAGTAATGTGAACAATGCTGGAGGTATCCCTCCTACATCCTGGACTGGATCTAGTTTAAATGTCCATTCAT TACCTAATCCCAACTGGACATTTAACCATGATGTCCCGGCGGAAAATCTGCAGAGAGTGTCAGAGTTGAGTCCTTGGTCC CTTTTTCCATCAATTAGCTCTGCACCTGGTACTCATCACAGCCATTCTATTTCTACCCCCTCTACTTCTGGTCCTCCTTC ATCTTCTCAGGGTTCTAGCAACAATCAACCATATCGAAGAACAGCATTTTCAATGGAAAGAAGGGGTGGTGATGTTCTCT CTGGTCCTCATTCACTGCGAGCATTAGCCTTTGATAGTGAGGGGAGACGTCGACTAATATCTGAGATTCGCCAAGTCTTG ACTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGGTCTTTGACCCTTTCCTATATCATGGCTTAGCTGA AATGCATGACCGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAACTATTGGCATTGGAAGAGCAAA TAGGAGATGTGAGCACTGGATTGAGTGAGGATAACATTCATAAGTTAATGAAACAGCGGCTTTACATTTCTTTCATGGCT GAATCATCATCTGATCCTGAACCTTGCTGTATCTGTCAGGAGCAATATGCTAATGGAGAGATTATTGGTTCACTAGATTG TGGGCATGAGTTCCACACTAAGTGCATCAAGCAATGGCTTGTTCAGAAGAATCTGTGCCCCATTTGCAAAACAACAGCCT TAGCTACATGA
Protein sequence (LotjaGi4g1v0076300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGQRRTAGSFPAIVSMMQGPGSSGTDMNNQSSLNHVQNAVDFRLSNYRGSTGETAHLRGTGPNVSFSGWNNGESSSGLN LINQVNDEGLKSEHGMSSLCGTTADNGLRPEERQLHVNQSRIHHSFLQGSSSNHISQNISLDMGHIPNTADRGKGIETSS AAHDCNPCELGREKAPFGIASYNHIGASSESPGYMAWGDSASSWGPSCKRKALEGSSGHLCTEGSSSSLVQTENGYWPTD PVDLNASCSLSDSTPLEDFSVISPPLQQNTRNGMRQEASNAFPSMISVAENVERPLRNFDRRITRLQHQESGPLNLTSTG SGILHNHSSAHQIPGSLLFNDSLELRLTAGATAANSGAVQNQTPALHMHPTPWNRAANPRASRASSSYSSGERAVREDLN LRIFPRDSTDHFMNVPASSGLEPMGWHASSSNVNNAGGIPPTSWTGSSLNVHSLPNPNWTFNHDVPAENLQRVSELSPWS LFPSISSAPGTHHSHSISTPSTSGPPSSSQGSSNNQPYRRTAFSMERRGGDVLSGPHSLRALAFDSEGRRRLISEIRQVL TAMRRGENLRAEDYMVFDPFLYHGLAEMHDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMA ESSSDPEPCCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 695 | 695 | 8.8E-267 | – | |
| PANTHER | 1 | 695 | 695 | 8.8E-267 | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 17 | 32 | 16 | - | – | |
| MobiDBLite | 372 | 391 | 20 | - | – | |
| MobiDBLite | 490 | 517 | 28 | - | – | |
| Gene3D | 610 | 694 | 85 | 1.9E-17 | ||
| SUPERFAMILY | 629 | 693 | 65 | 3.3E-18 | – | |
| CDD | 648 | 690 | 43 | 1.61782E-17 | – | |
| ProSiteProfiles | 649 | 690 | 42 | 12.445 | ||
| SMART | 649 | 689 | 41 | 7.5E-7 | ||
| Pfam | 649 | 690 | 42 | 1.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0076300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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