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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0076800 |
| Transcript ID | LotjaGi4g1v0076800.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G34100.2 RING/U-box superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I1JE11|I1JE11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0076800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9832707..9836738) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGATCGCTCACGAGCCACCGCCTTCCCTTGACGGAAGCCCTACCGCCGCCCAAACCCTCGCGACCTCTCCGTCGTC GTCGCCTTCTTCCTCCTCTTCTTCCGCTTCGTCGCCGCGTGGTTCCAAGGGAAAGGAGATCGATGCGACCTCGTCGGTGA CGGCGACGACTGCCACGACCGCGCCGCCGCCTGCTGCTAAATACGACGATGAGGAGGATGAAGAGGACGTGTGCCGGATA TGCCGAAACCCTGGAGATGCCGAAAATCCCCTCCGGTATCCTTGTGCGTGCAGCGGGAGTATCAAGTTTGTGCATCAAGA TTGTCTTCTCCAGTGGCTTAATCACAGCAATGCTCGCCAATGCGAGGTTTTACCCTCCTCTTTCATGTGCTCACTGTTTG GATTAATCGTTTTTAGAAATATTCAATTATCAGTTCTATTTTCATTGAATTTCTGATCCGAATCGTTTATAGTTGGGGAT TAATCTTATCTAAATGGACTTTGTATATGATGAATTGAGCTAGCAATTTTGAACTGCTCAGTAGAAATTAGAAGGGAAGA AAAATAAGCACTCTTGTCCTTGTTGTAGTGTGTATTATTGGAATTCTAAGCTTAAAGTTTGATTTTGTTTTCGAAGCTAT GCATATACTATGTTCAGTACTAGGCTAAACTTACCCCAATACTTTGATTGTATTTGAGAGGTTTCGGTTTTATTCCTAAA TGTGCTTCACATGGTGTACAGGTTTGTAAGCATGCGTTCTCGTTCTCTCCTGTTTATGCTGAGAATGCGCCAGCTAGGTT ACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAGGCCTGCCATGTTCTGCAATTCTTTTTGCGTCTGAGTTTTGTGC TATCTGTGTGGCTCTTGATTATACCTTTCATAACGTTCTGGATATGGCGGTTAGCGTTTGTGAGGAGTTTAGGTGAAGCC CAGAGGTTATTCTTGAGCCATTTATCAACAGCAGTTATTCTGACTGATTGCCTCCATGGTTTCCTACTTTCTGCGAGCAT AGTCTTCATCTTTCTTGGGGCCACTTCCTTGAGAGATTACTTCAGGCATTTGAGAGAAATTGGGGGACAGGATGCTGATA GAGAAGATGAAGTGGACAGAAATGGCGCTCGAATCGCTAGAAGACCTCCTGGACAAGCCAATCGTAATATTAATGGTGAT GGGAACGGTGAGGATGCTGGTGGAGCACAAGGAATTGCAGGAGCTGGTCAAGTAATTAGAAGAAATGCTGAAAATGTGGC TGCACGGTGGGAGATGCAAGCAGCACGTCTGGAGGCTCATGTTGAGCAGATGTTTGATGGTCTGGACGATGCTGATGGAG CTGAAGATGTACCCTTTGACGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCCTTTACTGTAAGA CTATCAATTTTTGTTTTTAAATTGAGTTTCGTTATTCCTTTATTACAATGTTACTGGGTAAGCTGCATCTCTATATAAAT ATTGGGTAAGCTGGCCTTGGTGAAACCAAGCTCATCATGGCATGCTACTTCTTTGCTGTGTTCAGTTGTAATTAACGACC ATTTAATCCTGATCCTGACTGGCTGCTAGTTTTTGTAGTTTATGTTTTTAAACTTATGATGTGCTTTATTTTTTTTAGGC CCCATTTTTAAGAACTTAAAGAATACCTTGGTTCTGTTTGAATGAGCACCTTGACAGAGCTTTTTGACACCAATTTAAGC TGCTTTGGGCTTATTTTGATTAACAGAAATTGAACTTGCCGACGCCTTTTTCAAAACTTAAAGTTCTATTTATAATATTT TTACGTAGTTCATCTCTTTAAATTACCAAATTCCATTATTCAATTACTGTTTCTGTATGTGTCTATCCAAACACTCTTAA GCGTATTTAGATTGCATTGGTGGCAGTAGACAAGCCCTATTGTCTAAACATTATTTATGCTGTATTTCTAAACAGGATCT TAGTCTTTTTTGAGTGATGGATGAGATGCATATTTGATTAATGAACTTCTATCATTCCATGTGAATGGAAAGATCGCATA TAGTATAATCTGATGAAAATGTTATTTCCACTTTGAAAAATATATTCAACGCGTGTGCTTGTAAAATTTCATTAGGGGTT TATAGTTGCATGATCCTCAGTGTTTTGTTTCTGGAAAATTGATTGTGGGATAAATTTTTCATCATTAACCAAAGCATGAG TATCTCACTTATTTTTATTTCATTCTATTGATATTTGATACAACTGCTTCACTTATTGTGTGAATTGTGTAATCATTAAC TGAAGATGAGTATATCGCTAGGTGATTGGTCACTTCCTCATATTCATTGGTCAATCTACAGATAAAAAAACCTCTCACGT TTTGTGAACTGTAACCTATTCTGAATAAAATTGTATGGAAGTCTTAGTGTGTTTTTTCCTTTGATGAAAAAACTTGCTAT TGAGGAAATTTATTATTTAGAAATTGAATAGTTTGTTCTCTATGCAGGTTCTTGCAAGTAATATGATTTTCCTTGGTGTT GTCATCTTTGTGCCCTTCTCACTGGGCCGCATCATACTCCATTATCTTTCCTGGGTCTTCTCAGCTGCTGGTGGTCCTGT GCTGTCAGCAGTGGTTCAACCTACGGACTCATCTCTTTCCCTAGCAAATATTACTTTAAAAAATGCTCTAACAGCTGTGA AAAATTTGTCATCTGAAACTCAAGAAAGTGGATCAATTGGTCAGGTTGCAGAAATGCTGAAAGTGAATGCCAGTGGATTG AGTGAAATGTCAAACAACATAAGTGCATCTGTTTCAGCTGATCTCTTGAAAGGAGGGTCTATTGGAACTTCTAGGCTTTC TGATGTTACTACTCTTGCTATTGGATATATTTTCATCTTGACTCTCATTTTCTGTTACTTTGGCATTGTTGCTTTAATTC GTTACACAAAGGGTGAACCCTTGACCCTGGGAAGGTTTTATGGTATCGCTTCAATAGCAGAGACAATTCCATCTCTCTTT AGGCAGTTTTTGGCAGCAATGAGGCATTTGATGACCATGGTGAAAGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATT TCCACTTATGTGTGGGTGGTGGCTTGATGTTTGTACCATACAGATGTTTGGTAAAACAATGGTGCACAGAGTTCAGTTCT TCTCTGCGTCTCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTAGGAATTGTGTACATGCTACAAATAAGCATATTTGTC AGCCTTCTTAGAGGGGTAACTTTTCTCACTCTAAATGATTTTAAAGCTGTTTCTCTATCCAGTGTCATGCTTATTTGTTT CAAATTGCAGGTTTTGCGTAATGGAGTTTTGTACTTCCTTCGGGATCCTGCTGATCCAAACTACAATCCATTCCGCGATC TGATAGATGATCCTGTGCACAAACATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGGAGTTTGATTGTCATGCTG GTATTTTTGCCGGTCAAACTTGCCATGCGGATGGCACCATCCATTTTCCCACTTGACATATCGTAAGCTAGCCACTCAAG CAGTTTTAGTAGTTTCTTCAGAATATACCGAACTCTCTGTCACTGTTGTTAACATTGAATATGTTCATTTTTTGCAGGGT ATCTGATCCATTCACCGAAATTCCTGCTGACATGCTTCTCTTTCAGATCTGTATTCCATTCGCTATTGAGCATTTTAAAT TGAGGACAACTATTAAATCCCTACTTCGCTACTGGTTTACGGCAGTTGGTTGGGCTCTTGGTTTAACTGATTTCTTACTG CCTAAACCAGATGATAATGGTAATCAAGAAAATGGAAACGGGGAGCCTGCTAGGCAGGAAAGGCTACAGATAGTACAAGC AGGGGTGCATGATCAGGGTATGGTTCCATTTGCAGGCGATGATTTGAATGCAGAAGGAGAACTGAATGCTGGAGAGGATT ATGATAATGATGAGCAATCTGATTCTGAGTGA
CDS sequence (LotjaGi4g1v0076800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATCGCTCACGAGCCACCGCCTTCCCTTGACGGAAGCCCTACCGCCGCCCAAACCCTCGCGACCTCTCCGTCGTC GTCGCCTTCTTCCTCCTCTTCTTCCGCTTCGTCGCCGCGTGGTTCCAAGGGAAAGGAGATCGATGCGACCTCGTCGGTGA CGGCGACGACTGCCACGACCGCGCCGCCGCCTGCTGCTAAATACGACGATGAGGAGGATGAAGAGGACGTGTGCCGGATA TGCCGAAACCCTGGAGATGCCGAAAATCCCCTCCGGTATCCTTGTGCGTGCAGCGGGAGTATCAAGTTTGTGCATCAAGA TTGTCTTCTCCAGTGGCTTAATCACAGCAATGCTCGCCAATGCGAGGTTTGTAAGCATGCGTTCTCGTTCTCTCCTGTTT ATGCTGAGAATGCGCCAGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAGGCCTGCCATGTTCTGCAA TTCTTTTTGCGTCTGAGTTTTGTGCTATCTGTGTGGCTCTTGATTATACCTTTCATAACGTTCTGGATATGGCGGTTAGC GTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTGAGCCATTTATCAACAGCAGTTATTCTGACTGATTGCCTCC ATGGTTTCCTACTTTCTGCGAGCATAGTCTTCATCTTTCTTGGGGCCACTTCCTTGAGAGATTACTTCAGGCATTTGAGA GAAATTGGGGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGCGCTCGAATCGCTAGAAGACCTCCTGGACA AGCCAATCGTAATATTAATGGTGATGGGAACGGTGAGGATGCTGGTGGAGCACAAGGAATTGCAGGAGCTGGTCAAGTAA TTAGAAGAAATGCTGAAAATGTGGCTGCACGGTGGGAGATGCAAGCAGCACGTCTGGAGGCTCATGTTGAGCAGATGTTT GATGGTCTGGACGATGCTGATGGAGCTGAAGATGTACCCTTTGACGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTT GGTTGAAAATGCCTTTACTGTTCTTGCAAGTAATATGATTTTCCTTGGTGTTGTCATCTTTGTGCCCTTCTCACTGGGCC GCATCATACTCCATTATCTTTCCTGGGTCTTCTCAGCTGCTGGTGGTCCTGTGCTGTCAGCAGTGGTTCAACCTACGGAC TCATCTCTTTCCCTAGCAAATATTACTTTAAAAAATGCTCTAACAGCTGTGAAAAATTTGTCATCTGAAACTCAAGAAAG TGGATCAATTGGTCAGGTTGCAGAAATGCTGAAAGTGAATGCCAGTGGATTGAGTGAAATGTCAAACAACATAAGTGCAT CTGTTTCAGCTGATCTCTTGAAAGGAGGGTCTATTGGAACTTCTAGGCTTTCTGATGTTACTACTCTTGCTATTGGATAT ATTTTCATCTTGACTCTCATTTTCTGTTACTTTGGCATTGTTGCTTTAATTCGTTACACAAAGGGTGAACCCTTGACCCT GGGAAGGTTTTATGGTATCGCTTCAATAGCAGAGACAATTCCATCTCTCTTTAGGCAGTTTTTGGCAGCAATGAGGCATT TGATGACCATGGTGAAAGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCACTTATGTGTGGGTGGTGGCTTGAT GTTTGTACCATACAGATGTTTGGTAAAACAATGGTGCACAGAGTTCAGTTCTTCTCTGCGTCTCCTTTAGCAAGCTCATT GGTTCATTGGGTTGTAGGAATTGTGTACATGCTACAAATAAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTGCGTAATG GAGTTTTGTACTTCCTTCGGGATCCTGCTGATCCAAACTACAATCCATTCCGCGATCTGATAGATGATCCTGTGCACAAA CATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGGAGTTTGATTGTCATGCTGGTATTTTTGCCGGTCAAACTTGC CATGCGGATGGCACCATCCATTTTCCCACTTGACATATCGGTATCTGATCCATTCACCGAAATTCCTGCTGACATGCTTC TCTTTCAGATCTGTATTCCATTCGCTATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTTCGCTACTGGTTT ACGGCAGTTGGTTGGGCTCTTGGTTTAACTGATTTCTTACTGCCTAAACCAGATGATAATGGTAATCAAGAAAATGGAAA CGGGGAGCCTGCTAGGCAGGAAAGGCTACAGATAGTACAAGCAGGGGTGCATGATCAGGGTATGGTTCCATTTGCAGGCG ATGATTTGAATGCAGAAGGAGAACTGAATGCTGGAGAGGATTATGATAATGATGAGCAATCTGATTCTGAGTGA
Protein sequence (LotjaGi4g1v0076800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIAHEPPPSLDGSPTAAQTLATSPSSSPSSSSSSASSPRGSKGKEIDATSSVTATTATTAPPPAAKYDDEEDEEDVCRI CRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQ FFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLR EIGGQDADREDEVDRNGARIARRPPGQANRNINGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMF DGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWVFSAAGGPVLSAVVQPTD SSLSLANITLKNALTAVKNLSSETQESGSIGQVAEMLKVNASGLSEMSNNISASVSADLLKGGSIGTSRLSDVTTLAIGY IFILTLIFCYFGIVALIRYTKGEPLTLGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLD VCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHK HARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWF TAVGWALGLTDFLLPKPDDNGNQENGNGEPARQERLQIVQAGVHDQGMVPFAGDDLNAEGELNAGEDYDNDEQSDSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 160 | 160 | - | – | |
| MobiDBLite | 1 | 72 | 72 | - | – | |
| MobiDBLite | 13 | 61 | 49 | - | – | |
| PANTHER | 64 | 793 | 730 | 8.5E-261 | – | |
| Gene3D | 65 | 137 | 73 | 1.5E-24 | ||
| ProSiteProfiles | 70 | 131 | 62 | 23.425 | ||
| SUPERFAMILY | 73 | 128 | 56 | 2.52E-16 | – | |
| SMART | 77 | 125 | 49 | 6.5E-25 | ||
| CDD | 77 | 126 | 50 | 2.05481E-30 | – | |
| Pfam | 78 | 124 | 47 | 9.3E-16 | ||
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 161 | 184 | 24 | - | – | |
| Phobius | 185 | 203 | 19 | - | – | |
| Phobius | 204 | 227 | 24 | - | – | |
| TMHMM | 207 | 229 | 23 | - | – | |
| Phobius | 228 | 349 | 122 | - | – | |
| MobiDBLite | 247 | 281 | 35 | - | – | |
| Coils | 295 | 315 | 21 | - | – | |
| Phobius | 350 | 370 | 21 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| Phobius | 371 | 375 | 5 | - | – | |
| Phobius | 376 | 396 | 21 | - | – | |
| Phobius | 397 | 476 | 80 | - | – | |
| TMHMM | 475 | 497 | 23 | - | – | |
| Phobius | 477 | 497 | 21 | - | – | |
| Phobius | 498 | 508 | 11 | - | – | |
| Phobius | 509 | 528 | 20 | - | – | |
| Phobius | 529 | 539 | 11 | - | – | |
| TMHMM | 540 | 562 | 23 | - | – | |
| Phobius | 540 | 559 | 20 | - | – | |
| Phobius | 560 | 586 | 27 | - | – | |
| Phobius | 587 | 611 | 25 | - | – | |
| TMHMM | 588 | 610 | 23 | - | – | |
| Phobius | 612 | 644 | 33 | - | – | |
| TMHMM | 645 | 667 | 23 | - | – | |
| Phobius | 645 | 664 | 20 | - | – | |
| Phobius | 665 | 683 | 19 | - | – | |
| Phobius | 684 | 703 | 20 | - | – | |
| Phobius | 704 | 714 | 11 | - | – | |
| Phobius | 715 | 734 | 20 | - | – | |
| Phobius | 735 | 797 | 63 | - | – | |
| MobiDBLite | 770 | 797 | 28 | - | – | |
| MobiDBLite | 780 | 797 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0076800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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