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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0077900 |
| Transcript ID | LotjaGi4g1v0077900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat protein kinase family protein; TAIR: AT1G49750.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q8W3M4|Y4744_ARATH Uncharacterized protein At4g06744; TrEMBL-Plants: tr|A0A1J7I5Y8|A0A1J7I5Y8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0077900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10032562..10034804) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAAACCAGTGTCAAAATCTGCCAGTGGCTGCTTAATTATTTTCATTTGCTTTTTCCCATTTTGTAAGTTTCTGAGAT TCTTCGAACCACCACCCATAGACAAAAGTATTGAAATGAAAGCTCCTCACAAGTGTGCAGACTGCAGACTTTTCTTCCAG AGGCATCACTTTCCCACCTTCATATATACACACACAAATGATCCATTTCCAACAGACCTCATCTCACAATAACCTTTCCT AAATCAATAATTCAACACAACACCCTCTGCAGTTGACTCAACACAGAAAAATGATAGAAACCAAGTCCCTGAGCTTCTTC TCACTCTTAGTATTTGCTCTCTTCTTCCTTCATTTTCACCTCCAAGTTAATTCCCAACACATAGCAGCTTCAGAAAGAGA AGCCCTAGGTCTGGAACAATCAGAACCCGAAACTGAACGAAAAGCACTCGAAATCATCATCGGTAGTGGCGGCGGAGGCA GCGGTGGCCCGTCTCCTGCCCCCTCCCCCGCCAGCTGCCCACCTCCCCCACCCAAACCACTCAGCCGTTTAGACAAAGCT CGCCGCGTCCTCCTCAAATTCGCCGCCAACATCGACGACCCCAACTGCTACACCAAAACCTGGAACAGCCAAACCGACAC CTGCCAATTCAACGGCATCCGATGCGGCATATATCCAAACTCCAACGAGAGAGCCGTCGCCGGAATCGACCTCAACACCG CCGGCGTCTCCGGCAAAAACGGCAACGCTCTCTCCCTCTACGGCATCCTCGACAGCATCCCGGAACTCACATTCTTCCAC GTGAACTCCAACAACTTCTCCGGCGCTGTCCCGAGCGAAATCCTCAAGTTCACCTACTTCTACGAGCTCGACATCAGCAA CAACAAATTCTCCGGCGAGTTTCCGATGGATGTTCTCAAGTTCAGCTCCAAGCAGTTGATCTTCTTGGATATCAGGTTCA ACCGCTACCACGGCGCGGTTCCGCCGCAACTGTTTAACCTCAACTTGGATGTCATTTTCATCAACAACAACCAATTCTCC GGTTACCTCCCGGAGAATTTCGGGTCAACGCCGGCAAGGTATCTCACCTTCGCCAACAACCTGCTCACCGGTCCGATCCC GAAAAGCATCGGGAACGCCTCGAAGACGCTCACGGAGGTTCTCTTCCTCGGTAACCAATTTGACGGTTGCTTACCGTACG AAATTGGTTACCTGAAGAGAGCCACCGTGTTCGACGTGAGTAACAATCACTTGACTGGTCCTATTCCTCAGTCATTTGCT TGTTTGGAGAAGATTCGGTTTCTGAATCTGGCTCAGAACAAGTTCTATGGTAAGGTTCCGGAGAGTGTTTGTGTTCTTCC GGGGATACGTAACAATGGGAATTTTTCACTTTCTGATAACTATTTCACTGAAGTTGGACCTGAATGTTGGAAGCTGATTA AGTCTAAGGTTCTTGATGTTTCTAAGAATTGCATTCCCGGGCTTTCGAATCAGAAGTCGCCGAAAGAATGCTATGATTTT AAGTGTAAGGTGAAGCCATGCCAGAATCAACAGAGTTTAAGCTATGTTCCTTGTAAAGGGTATTGGCAGAAAGAGGGTGA ATCCTCTGTTTCTAAAGCATCTAGTGCACCATCTGAGCCTGTAACTTACAAGTCTCTCAAACCACATCGCTTGAGACTGT GATCATGTCATGATTTGATTCCTAGGGGATTGTTGGATTAATGATCAGTGAGTAATGTGTGTTCGTTCATAGATATTTGT ATAAATTAAAGTTCAGTCAGTACATCGCGAAATTGTTGACAAATGCAGAGTGATGCAGTCGCAATTGCGCTTGTGGTGCT GATGATAATGGGGAGATTCAAAACTTGTTAGGTTACAGCCTTGCAAGCTAGTTGATAATTGTAAGTTGTGTATATTCATC ATGAATAAGGACATGTTATCCAACTTGGAATCATTGGAATTTATTTATGGCAAATTTGATTCTGCTCAAATGTAATTCTG TACTAAATTTGCTTATAATAATACTTCTGTTGGTGTCTTATCGGGAAATATTGATTGATGATGAGTCTTGCACTTTTAAA TATAAGCATGATGGAGCAATTCTCTTTCTAAAATGATGATAAGAAAAATCAGCAAAGCTGTCTTTTGACTTTTCGCCTAG CCCTCATGGTTCACAGGACCACTACCTTTCAATCTTTCTTGCTTGCGCTCCCCCACATCTTTTGTTGGTTCACAGGACCA CTA
CDS sequence (LotjaGi4g1v0077900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGAAACCAAGTCCCTGAGCTTCTTCTCACTCTTAGTATTTGCTCTCTTCTTCCTTCATTTTCACCTCCAAGTTAA TTCCCAACACATAGCAGCTTCAGAAAGAGAAGCCCTAGGTCTGGAACAATCAGAACCCGAAACTGAACGAAAAGCACTCG AAATCATCATCGGTAGTGGCGGCGGAGGCAGCGGTGGCCCGTCTCCTGCCCCCTCCCCCGCCAGCTGCCCACCTCCCCCA CCCAAACCACTCAGCCGTTTAGACAAAGCTCGCCGCGTCCTCCTCAAATTCGCCGCCAACATCGACGACCCCAACTGCTA CACCAAAACCTGGAACAGCCAAACCGACACCTGCCAATTCAACGGCATCCGATGCGGCATATATCCAAACTCCAACGAGA GAGCCGTCGCCGGAATCGACCTCAACACCGCCGGCGTCTCCGGCAAAAACGGCAACGCTCTCTCCCTCTACGGCATCCTC GACAGCATCCCGGAACTCACATTCTTCCACGTGAACTCCAACAACTTCTCCGGCGCTGTCCCGAGCGAAATCCTCAAGTT CACCTACTTCTACGAGCTCGACATCAGCAACAACAAATTCTCCGGCGAGTTTCCGATGGATGTTCTCAAGTTCAGCTCCA AGCAGTTGATCTTCTTGGATATCAGGTTCAACCGCTACCACGGCGCGGTTCCGCCGCAACTGTTTAACCTCAACTTGGAT GTCATTTTCATCAACAACAACCAATTCTCCGGTTACCTCCCGGAGAATTTCGGGTCAACGCCGGCAAGGTATCTCACCTT CGCCAACAACCTGCTCACCGGTCCGATCCCGAAAAGCATCGGGAACGCCTCGAAGACGCTCACGGAGGTTCTCTTCCTCG GTAACCAATTTGACGGTTGCTTACCGTACGAAATTGGTTACCTGAAGAGAGCCACCGTGTTCGACGTGAGTAACAATCAC TTGACTGGTCCTATTCCTCAGTCATTTGCTTGTTTGGAGAAGATTCGGTTTCTGAATCTGGCTCAGAACAAGTTCTATGG TAAGGTTCCGGAGAGTGTTTGTGTTCTTCCGGGGATACGTAACAATGGGAATTTTTCACTTTCTGATAACTATTTCACTG AAGTTGGACCTGAATGTTGGAAGCTGATTAAGTCTAAGGTTCTTGATGTTTCTAAGAATTGCATTCCCGGGCTTTCGAAT CAGAAGTCGCCGAAAGAATGCTATGATTTTAAGTGTAAGGTGAAGCCATGCCAGAATCAACAGAGTTTAAGCTATGTTCC TTGTAAAGGGTATTGGCAGAAAGAGGGTGAATCCTCTGTTTCTAAAGCATCTAGTGCACCATCTGAGCCTGTAACTTACA AGTCTCTCAAACCACATCGCTTGAGACTGTGA
Protein sequence (LotjaGi4g1v0077900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIETKSLSFFSLLVFALFFLHFHLQVNSQHIAASEREALGLEQSEPETERKALEIIIGSGGGGSGGPSPAPSPASCPPPP PKPLSRLDKARRVLLKFAANIDDPNCYTKTWNSQTDTCQFNGIRCGIYPNSNERAVAGIDLNTAGVSGKNGNALSLYGIL DSIPELTFFHVNSNNFSGAVPSEILKFTYFYELDISNNKFSGEFPMDVLKFSSKQLIFLDIRFNRYHGAVPPQLFNLNLD VIFINNNQFSGYLPENFGSTPARYLTFANNLLTGPIPKSIGNASKTLTEVLFLGNQFDGCLPYEIGYLKRATVFDVSNNH LTGPIPQSFACLEKIRFLNLAQNKFYGKVPESVCVLPGIRNNGNFSLSDNYFTEVGPECWKLIKSKVLDVSKNCIPGLSN QKSPKECYDFKCKVKPCQNQQSLSYVPCKGYWQKEGESSVSKASSAPSEPVTYKSLKPHRLRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Phobius | 29 | 463 | 435 | - | – | |
| PANTHER | 47 | 460 | 414 | 2.8E-151 | – | |
| PANTHER | 47 | 460 | 414 | 2.8E-151 | – | |
| MobiDBLite | 57 | 83 | 27 | - | – | |
| Gene3D | 84 | 261 | 178 | 2.0E-29 | ||
| Pfam | 89 | 125 | 37 | 3.1E-6 | ||
| SUPERFAMILY | 91 | 395 | 305 | 8.16E-41 | – | |
| Gene3D | 262 | 426 | 165 | 2.4E-26 | ||
| MobiDBLite | 438 | 463 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0077900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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