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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0078300 |
| Transcript ID | LotjaGi4g1v0078300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT2G01430.1 homeobox-leucine zipper protein 17; Swiss-Prot: sp|Q9XH38|HOX3_ORYSI Homeobox-leucine zipper protein HOX3; TrEMBL-Plants: tr|A0A0L9VAC1|A0A0L9VAC1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10206233..10210384) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTTTCTATATATCTTTGACCTTTTTTCACCAAAAAATTCATCACATCCTTTGTTTGCTGCTTCTGTCTTCATTATCC TTTTCATTTGTGTCTCCTTCTGCTTCTTCACTTTACCTTTCTCCTCTATTTTGATCACATGGATCGGATCTTCCTTCTGC TTCTTCTAGTTCATTCCCATCTCTTTTATTATAATTAAGTCCTTTTCTTTTCTTCTCATCTTCTATGGCGGTTCCCCCTA GAAGTTCCTCCAGCTTGGAATTGACCATAGGGTTTGCTTCTTCACCAACCCTTCATCACTCATCATTTGGTAAGCAGAGG CAATCATAAATATCTTCTTTGTCTTTGTAATTTTGATCTTCCTCTCTTCTTAATTACCTCTAGCTTCCATTTTTATATTT GTGGTTTATTTTCATGTTCGGATGTGTTAACTAAAATCACGATCACATAAGTTCATGACCAGGGTTCTTTTTGCCATCTA AAAATCTTTTTGTTTTCTCTCTATATATTTGGCGGGTAGGAGACATGATATCTATAAATTAGACATCATATTTGGAATTT TGTTCTTAGATATATAGCATGTTTAATTAATTAGTTGAACTTATTATTTCATAAAATTAATTCTAGCACTTAGAATCGGA TCAGATTATTATATGTTTCTGAAAATTATTCTAGCACTTAGAATTTGCTTGCGGGCGCTTTTCTGCAGTCATATGAGCTT CTCTCTAAAATTGATTCTGACATAGAAGAACTTAATAATAGATTATTTTACTTTTCTAGTATTGATGAAAAATAGAAAGT ACTCATAAAATAGATGATTTTTATATGGCAGTGTTTGGTGTTACAGTGAAAGAATTGGACATGAACCGTGTACCCTTAGA AGAAGGATGGATGGGATCAAACATGGAAGATGAAGACGAAAACACCAATGGAGACACTCGCCACAAAAAGCTCCGTCTCA CAAAGGAACAGTCCCGTCTCCTTGAAGAAAGATTTAGACAAAACCACACTTTAAACCCAGTAACCCTCATCCCATCACCA TTTATTTGTTCATCGTTTAAAATTATCATGAGAGAGATGCTTGCTATATAGTACACTTCAAGTTTTTAATATACGGTTTT TTATTAATTTGTTTGTACTGCAGAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAGCTCCAACCAAGACAAGTGGAAGTA TGGTTTCAGAACCGCAGGGCTAGGTAATGGCTAATCCTCAATAACAATGTTTTATTCACACCTTTACACCTAACATTTTT AGTGAGAGGTAGATTATAAGAGGAAAAAATGAGTAATATAATAAGTAATATAATGTAATAGAAACAGAAAAAAGATATAA AGAAAAACTAGGTGAAAAATGATCTATAAAAGTATAATAACATTCTAAATACAGTACTCCATCATATATGTGAAGAAATG AAATAGAAATCCAAGATATAATATGTAATGTGATATGAAAAATAGAGAAAAATAATAAGAGAAAAAAATAAAAATAAAAT GGAAAAAAGTGTGAATAAATTATATTTCTAAGAAGTATAGTTGAAGTTTGCAAAGATAATACAAGGACCATTTATGCACA ACCATAAAATAAGTTCATATGATTAAACACATTATGCTCAATAATAAAGTAATAATAAAGTGTTGGTTTGGTGGTAAGTA AGTTAGGCCCGTAAGAATGGAAGCATAACTTTAAATTCTAGGAAATACATTTATTGTGAAAGATATGTAACTGTTTTTCA AGGAAATGACAATATCTCTAAGAAAAAAGATCCAAACACTTAATAGAAACTCATACAATTTATAACATGTTTAATTATTT TTCATATATAGAAAGCTTGATGTTCAAGTAAAATCTGGTGTCTTTGTAAGTTTTGTTCATACCGAAAATAAGCCCACCTT TTGTTTTCTTTTCCTTTCTTGTGCCGAAGAAAAATATAAGCAAATAATGATGTCGTTCGGTTCAAGTGTTAAACATATAT ATAATTTCAGCTGGGTGAGAAAACACAATCATTGTTGTCCAAATTAAAGTAGACAACTCGATAATGATAGCACGGCATAT ATGGAGTTTTATTTGGCTTCGTGTGTATGTTACCCTGATCAACTCTGCAATAAGTGCTCCTTTGACCACTTGATTTGCTC CTTTATATCGACCACCCATGCTTTTTATTTTACAATGAAAAATTATTAGTAGTGTTATCAACACGTATCCATAAATTAAA GCAAATAGGGGAGATTCAGTGCTTATTGCCAATAATAAATTTTTTATTTTAAAATAATCATCTTTGTCACGTTGTAATCG CATATTTATATACCTGCATCATATCTTATAGTACGTACATTTTAGTGCAATATGAGAAAGAAAGAGAGACTTGTCTAAAA TTAAACCATATACTTTATATATTTCTTAATGCCTATAAAAAAACATACATTGTACTATAACTGTTCCTCTTTTGGTTAAT ATTTAACTTTTAGGGCTTAATGTCTAAGTTTTAAAGGTTAAATTAACTCAATAAAAATTTAATAAAAAATTGTATGTAAT TCTCAAAACATTTACCTTGATCATATCATACATTAATCAAGCGGTTAATTGAATTAACTCTAAAATTACATGTTTGATTG TGCTTAATTAGCAACCTCTTTTATTCAAATATTGTACATGGAGAAAGAATTTTGAGAAAAGCTGATCACACTACAATTTA GATATTCTCGAACCGAATGGTACTTTATTTTCAACTTTGATTAAAATTTCAATTCTATTGATCTCTTAAATGAGTTATTT AAGAATTTGAATAAAAATTAGTTTGAACGCAAGTTAAAGAGCACTTATTAAAAATTTTCTAAATTACCAAATAAGTCCTA AAAAGTGTTCTTTGTTTGCAAATGCTCTAAATTAGACAACCTTTTCAAAGAGGTGTAGACATTTCCCCTAGACTTGAAAA CCAACCGGCAAAGTATTGTAATCATGTCTCCCACAAAATGCAATGCAATTAATCAGTGCATGCATGTGTTGACTGAATGA ACAGGAGCAAACTGAAGCAGACTGAGATGGAGTGCGAGTACTTGAAGAGGTGGTTCGGGTCATTGACAGAGCAGAACCGT AGATTGCAAAGGGAAGTGGAGGAACTCAGAGCCATGAAGGTGGGTCCCCCCACCGTGATAGCTCCTCATACTAGCAAGCC ACTACCAGCATCCACACTTTCCATGTGTCCTTGCTGCGAGCGTGTCACCACCACCGTTGCCACCGTCGACAAAGCAAATA CGGCTGCCGCCACTTTGTCTCCTAAAGTTGGGACGCCTGCTGCCCTCATGTCACGTTAACCTTAAGCAGGTTGTTGAGGT CGTTGCTTCCTTGCTTCTCCACTAGTGCACGGCACTGAAACGAGATGCATTAAAGCTTAACAGAACAAAGTTTAGACAGA AAAGAGAAAAGATGAAGAATATAAGGAAAATGAAATGTTTTTATGTATATATAGCTTCTAGTCTTGTACCGAAAGGTGTT TCTGAGAGGGAGGAGAAAGTGGATCTTTTGTAGGAGTGTTTTTCTATATATGATCAATGCATATTTAAATAGGCTATGTT TCATCATAGGCTATGTTACGAAACCACATTCACACAACTGAGAAGAAATTGAAAACCAAGAACTAGGTGCTTACCTTCAA TCAAAGCTACAAGGAGAAGAAACTTAAACCCAAGATGAAAATCCGAGTGAGAACTGAGAACCGAGAGCACGAACACCAGT TTTGATGAGAATGTGAATCTGAAACCTAAAATCCCTAATTCCTAACCAAAACAAACAGATCCAAATCAGAAACCTGAAAT CTAAAACCTAAAATCCTTAATTCCTTATCAATTCGCGAGATGAAACGAAGTGCTTACCTTCAATCAATGATTGAGCTTCA ATCTGGAACTTTCCTTTTGAGAATCGCCATCGCTGAGAGAGGAGTGAAGGTGTGGTGAAGAATCGTGATCTGAGAGGTGA AGGTGTGGTGGGTTCAGCTTCTGAAAATCGCTTGAGAAGTGAATGTGAAAATCGTGAAAATCGCGATATGAAATGAAGAA GAGGTGAAGTGGGTTTAATTTAGGTTTTCCGGTTTAATTATTCTGCGGCGCCCGGTTGAACCGCCTCTAAAA
CDS sequence (LotjaGi4g1v0078300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTCCCCCTAGAAGTTCCTCCAGCTTGGAATTGACCATAGGGTTTGCTTCTTCACCAACCCTTCATCACTCATC ATTTGTGTTTGGTGTTACAGTGAAAGAATTGGACATGAACCGTGTACCCTTAGAAGAAGGATGGATGGGATCAAACATGG AAGATGAAGACGAAAACACCAATGGAGACACTCGCCACAAAAAGCTCCGTCTCACAAAGGAACAGTCCCGTCTCCTTGAA GAAAGATTTAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAGCTCCAACCAAGACA AGTGGAAGTATGGTTTCAGAACCGCAGGGCTAGGAGCAAACTGAAGCAGACTGAGATGGAGTGCGAGTACTTGAAGAGGT GGTTCGGGTCATTGACAGAGCAGAACCGTAGATTGCAAAGGGAAGTGGAGGAACTCAGAGCCATGAAGGTGGGTCCCCCC ACCGTGATAGCTCCTCATACTAGCAAGCCACTACCAGCATCCACACTTTCCATGTGTCCTTGCTGCGAGCGTGTCACCAC CACCGTTGCCACCGTCGACAAAGCAAATACGGCTGCCGCCACTTTGTCTCCTAAAGTTGGGACGCCTGCTGCCCTCATGT CACGTTAA
Protein sequence (LotjaGi4g1v0078300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVPPRSSSSLELTIGFASSPTLHHSSFVFGVTVKELDMNRVPLEEGWMGSNMEDEDENTNGDTRHKKLRLTKEQSRLLE ERFRQNHTLNPKQKECLAMQLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPP TVIAPHTSKPLPASTLSMCPCCERVTTTVATVDKANTAAATLSPKVGTPAALMSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 196 | 196 | 6.8E-90 | – | |
| PANTHER | 1 | 196 | 196 | 6.8E-90 | – | |
| MobiDBLite | 49 | 70 | 22 | - | – | |
| SUPERFAMILY | 51 | 123 | 73 | 2.69E-19 | ||
| Gene3D | 58 | 129 | 72 | 4.1E-18 | – | |
| ProSiteProfiles | 62 | 122 | 61 | 17.362 | ||
| SMART | 64 | 126 | 63 | 3.0E-15 | ||
| Pfam | 65 | 120 | 56 | 1.6E-16 | ||
| CDD | 65 | 123 | 59 | 4.22439E-16 | ||
| ProSitePatterns | 97 | 120 | 24 | - | ||
| Pfam | 122 | 156 | 35 | 3.0E-9 | ||
| SMART | 122 | 165 | 44 | 5.4E-22 | ||
| Coils | 135 | 155 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0078300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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