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LotjaGi4g1v0078300.2

Overview

Field Value
Gene ID LotjaGi4g1v0078300
Transcript ID LotjaGi4g1v0078300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Homeobox associated leucine zipper protein; TAIR: AT2G01430.1 homeobox-leucine zipper protein 17; Swiss-Prot: sp|Q9XH38|HOX3_ORYSI Homeobox-leucine zipper protein HOX3; TrEMBL-Plants: tr|I1ND77|I1ND77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:10206292..10209821) extracted from Lotus japonicus Gifu genome v1.2.

CTGCTTCTGTCTTCATTATCCTTTTCATTTGTGTCTCCTTCTGCTTCTTCACTTTACCTTTCTCCTCTATTTTGATCACA TGGATCGGATCTTCCTTCTGCTTCTTCTAGTTCATTCCCATCTCTTTTATTATAATTAAGTCCTTTTCTTTTCTTCTCAT CTTCTATGGCGGTTCCCCCTAGAAGTTCCTCCAGCTTGGAATTGACCATAGGGTTTGCTTCTTCACCAACCCTTCATCAC TCATCATTTGGTAAGCAGAGGCAATCATAAATATCTTCTTTGTCTTTGTAATTTTGATCTTCCTCTCTTCTTAATTACCT CTAGCTTCCATTTTTATATTTGTGGTTTATTTTCATGTTCGGATGTGTTAACTAAAATCACGATCACATAAGTTCATGAC CAGGGTTCTTTTTGCCATCTAAAAATCTTTTTGTTTTCTCTCTATATATTTGGCGGGTAGGAGACATGATATCTATAAAT TAGACATCATATTTGGAATTTTGTTCTTAGATATATAGCATGTTTAATTAATTAGTTGAACTTATTATTTCATAAAATTA ATTCTAGCACTTAGAATCGGATCAGATTATTATATGTTTCTGAAAATTATTCTAGCACTTAGAATTTGCTTGCGGGCGCT TTTCTGCAGTCATATGAGCTTCTCTCTAAAATTGATTCTGACATAGAAGAACTTAATAATAGATTATTTTACTTTTCTAG TATTGATGAAAAATAGAAAGTACTCATAAAATAGATGATTTTTATATGGCAGTGTTTGGTGTTACAGTGAAAGAATTGGA CATGAACCGTGTACCCTTAGAAGAAGGATGGATGGGATCAAACATGGAAGATGAAGACGAAAACACCAATGGAGACACTC GCCACAAAAAGCTCCGTCTCACAAAGGAACAGTCCCGTCTCCTTGAAGAAAGATTTAGACAAAACCACACTTTAAACCCA GTAACCCTCATCCCATCACCATTTATTTGTTCATCGTTTAAAATTATCATGAGAGAGATGCTTGCTATATAGTACACTTC AAGTTTTTAATATACGGTTTTTTATTAATTTGTTTGTACTGCAGAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAGCTC CAACCAAGACAAGTGGAAGTATGGTTTCAGAACCGCAGGGCTAGGTAATGGCTAATCCTCAATAACAATGTTTTATTCAC ACCTTTACACCTAACATTTTTAGTGAGAGGTAGATTATAAGAGGAAAAAATGAGTAATATAATAAGTAATATAATGTAAT AGAAACAGAAAAAAGATATAAAGAAAAACTAGGTGAAAAATGATCTATAAAAGTATAATAACATTCTAAATACAGTACTC CATCATATATGTGAAGAAATGAAATAGAAATCCAAGATATAATATGTAATGTGATATGAAAAATAGAGAAAAATAATAAG AGAAAAAAATAAAAATAAAATGGAAAAAAGTGTGAATAAATTATATTTCTAAGAAGTATAGTTGAAGTTTGCAAAGATAA TACAAGGACCATTTATGCACAACCATAAAATAAGTTCATATGATTAAACACATTATGCTCAATAATAAAGTAATAATAAA GTGTTGGTTTGGTGGTAAGTAAGTTAGGCCCGTAAGAATGGAAGCATAACTTTAAATTCTAGGAAATACATTTATTGTGA AAGATATGTAACTGTTTTTCAAGGAAATGACAATATCTCTAAGAAAAAAGATCCAAACACTTAATAGAAACTCATACAAT TTATAACATGTTTAATTATTTTTCATATATAGAAAGCTTGATGTTCAAGTAAAATCTGGTGTCTTTGTAAGTTTTGTTCA TACCGAAAATAAGCCCACCTTTTGTTTTCTTTTCCTTTCTTGTGCCGAAGAAAAATATAAGCAAATAATGATGTCGTTCG GTTCAAGTGTTAAACATATATATAATTTCAGCTGGGTGAGAAAACACAATCATTGTTGTCCAAATTAAAGTAGACAACTC GATAATGATAGCACGGCATATATGGAGTTTTATTTGGCTTCGTGTGTATGTTACCCTGATCAACTCTGCAATAAGTGCTC CTTTGACCACTTGATTTGCTCCTTTATATCGACCACCCATGCTTTTTATTTTACAATGAAAAATTATTAGTAGTGTTATC AACACGTATCCATAAATTAAAGCAAATAGGGGAGATTCAGTGCTTATTGCCAATAATAAATTTTTTATTTTAAAATAATC ATCTTTGTCACGTTGTAATCGCATATTTATATACCTGCATCATATCTTATAGTACGTACATTTTAGTGCAATATGAGAAA GAAAGAGAGACTTGTCTAAAATTAAACCATATACTTTATATATTTCTTAATGCCTATAAAAAAACATACATTGTACTATA ACTGTTCCTCTTTTGGTTAATATTTAACTTTTAGGGCTTAATGTCTAAGTTTTAAAGGTTAAATTAACTCAATAAAAATT TAATAAAAAATTGTATGTAATTCTCAAAACATTTACCTTGATCATATCATACATTAATCAAGCGGTTAATTGAATTAACT CTAAAATTACATGTTTGATTGTGCTTAATTAGCAACCTCTTTTATTCAAATATTGTACATGGAGAAAGAATTTTGAGAAA AGCTGATCACACTACAATTTAGATATTCTCGAACCGAATGGTACTTTATTTTCAACTTTGATTAAAATTTCAATTCTATT GATCTCTTAAATGAGTTATTTAAGAATTTGAATAAAAATTAGTTTGAACGCAAGTTAAAGAGCACTTATTAAAAATTTTC TAAATTACCAAATAAGTCCTAAAAAGTGTTCTTTGTTTGCAAATGCTCTAAATTAGACAACCTTTTCAAAGAGGTGTAGA CATTTCCCCTAGACTTGAAAACCAACCGGCAAAGTATTGTAATCATGTCTCCCACAAAATGCAATGCAATTAATCAGTGC ATGCATGTGTTGACTGAATGAACAGGAGCAAACTGAAGCAGACTGAGATGGAGTGCGAGTACTTGAAGAGGTGGTTCGGG TCATTGACAGAGCAGAACCGTAGATTGCAAAGGGAAGTGGAGGAACTCAGAGCCATGAAGGTGGGTCCCCCCACCGTGAT AGCTCCTCATACTAGCAAGCCACTACCAGCATCCACACTTTCCATGTGTCCTTGCTGCGAGCGTGTCACCACCACCGTTG CCACCGTCGACAAAGCAAATACGGCTGCCGCCACTTTGTCTCCTAAAGTTGGGACGCCTGCTGCCCTCATGTCACGTTAA CCTTAAGCAGGTTGTTGAGGTCGTTGCTTCCTTGCTTCTCCACTAGTGCACGGCACTGAAACGAGATGCATTAAAGCTTA ACAGAACAAAGTTTAGACAGAAAAGAGAAAAGATGAAGAATATAAGGAAAATGAAATGTTTTTATGTATATATAGCTTCT AGTCTTGTACCGAAAGGTGTTTCTGAGAGGGAGGAGAAAGTGGATCTTTTGTAGGAGTGTTTTTCTATATATGATCAATG CATATTTAAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0078300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGTTCCCCCTAGAAGTTCCTCCAGCTTGGAATTGACCATAGGGTTTGCTTCTTCACCAACCCTTCATCACTCATC ATTTGTGAAAGAATTGGACATGAACCGTGTACCCTTAGAAGAAGGATGGATGGGATCAAACATGGAAGATGAAGACGAAA ACACCAATGGAGACACTCGCCACAAAAAGCTCCGTCTCACAAAGGAACAGTCCCGTCTCCTTGAAGAAAGATTTAGACAA AACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAGCTCCAACCAAGACAAGTGGAAGTATGGTT TCAGAACCGCAGGGCTAGGAGCAAACTGAAGCAGACTGAGATGGAGTGCGAGTACTTGAAGAGGTGGTTCGGGTCATTGA CAGAGCAGAACCGTAGATTGCAAAGGGAAGTGGAGGAACTCAGAGCCATGAAGGTGGGTCCCCCCACCGTGATAGCTCCT CATACTAGCAAGCCACTACCAGCATCCACACTTTCCATGTGTCCTTGCTGCGAGCGTGTCACCACCACCGTTGCCACCGT CGACAAAGCAAATACGGCTGCCGCCACTTTGTCTCCTAAAGTTGGGACGCCTGCTGCCCTCATGTCACGTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0078300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVPPRSSSSLELTIGFASSPTLHHSSFVKELDMNRVPLEEGWMGSNMEDEDENTNGDTRHKKLRLTKEQSRLLEERFRQ NHTLNPKQKECLAMQLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVIAP HTSKPLPASTLSMCPCCERVTTTVATVDKANTAAATLSPKVGTPAALMSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45714
1 191 191 4.0E-89 –
PANTHER
PTHR45714:SF8
1 191 191 4.0E-89 –
MobiDBLite
mobidb-lite
44 65 22 - –
SUPERFAMILY
SSF46689
46 118 73 2.52E-19
IPR009057
Gene3D
G3DSA:1.10.10.60
53 124 72 4.0E-18 –
ProSiteProfiles
PS50071
57 117 61 17.362
IPR001356
SMART
SM00389
59 121 63 3.0E-15
IPR001356
CDD
cd00086
60 118 59 7.06606E-16
IPR001356
Pfam
PF00046
60 115 56 1.5E-16
IPR001356
ProSitePatterns
PS00027
92 115 24 -
IPR017970
Pfam
PF02183
117 151 35 2.9E-9
IPR003106
SMART
SM00340
117 160 44 5.4E-22
IPR003106
Coils
Coil
130 150 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0078300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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