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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0078600 |
| Transcript ID | LotjaGi4g1v0078600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT5G37810.1 NOD26-like intrinsic protein 4;1; Swiss-Prot: sp|P49173|NIP1_NICAL Probable aquaporin NIP-type; TrEMBL-Plants: tr|A0A072UPF3|A0A072UPF3_MEDTR Major intrinsic protein (MIP) family transporter; Found in the gene: LotjaGi4g1v0078600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10268550..10271355) extracted from Lotus japonicus Gifu genome v1.2.
GGGAATACAACACTTTTATCTCCATTGGTTACTCAAAAAAATAGCTGAACCATCAATACTTCATTGCTCCTATTAAAAAG GGTGTTTTTATTACAAGTAGACAGACTTTCAACCATCACAAACTATGAAACTCTTCTCATCAGAAGAAAAGTACTGAAAG AAAGAAAATTGAAGAAGTTGACTGTTATTTAGGTAAACATGCCTACCGATGAGATTACGAAAATGGAAGAAGGTGGACTT AAGCCCGAAAGGGAGTCTGGGTTTTGCGGTTCTCCTGAGGTAGTTCAAGTCATACAAAAGGTAAATGAATACATGTATGA ATCTAGAAGCTTAATTTTAAATATATATTTCTCATTAATCTTATTTAGTTTTTATATAGTTGTATTGTTGAGTTGAAGGC GAGACTAGGCGCAACAGTAAAAGGTTGTTGTTGCCAAGTAACTGAGGTCATGGGTTCATGACCTGAAAACAACCTCTTGT GTAAAAAATAAAGTAAGGCCACGAAAAATAGACCATGTGGTCAGAACTTTCCGCAGACTCGCGCACGCTAGAGCCTTAAT GCACCAACTTCCCCCTTATGTTGTTGAGTTATGTAGAGTTAATTTAATTTCTTTATTATCACCAACCATTGATAACTGAA AATAAATACAATCAAATCTCAATGTAACAGGTAATAGCAGAGGTTATAGGGACATACTTCTTGGTATTTGCAGGGTGTTG TTCTGTGATTCTAAACAAAGTGGAAGGAAGTAAAGGGACAATAACGTTTCCAGGAATTTGTGTGGTATGGGGTCTAACAG TAATGATCTTGGTTTATTCTCTTGGTCATATATCTGGTGGCCATTTCAATCCAGCTGTTACTGTCAGCTTTGCAATCTAT CGTCATTTCCCTCTGAAACAGGCATGCATACTATTGATTACTATTTCTACTACAATTGTAACATTTTATTTTTATTTTGT TGAGAAGTACAACAATTGTATTTGTTTTAATCTAAATTTATGTCCATGATTGTTGCAGGTACCTCTGTATCTTATAGCGC AGGTGCTAGGATCCATCCTTGCTAGTGGGACATTGTTCCTTCTATTTGATCTTGATGAGAATTCTTATTTTGGAACAACA CCAGCAGGATCTCATATCCAGTCTCTAGTATTCGAGATCCTAACATCATTTCTCTTGATGTTTGTTGTATCAGCAGTTGC CACTGACAATAGAGCAGTAAGTATACTCCATTTACTCCAGCAATTCTATGGTAGATTAGTTTAAAAATTGGTCAACCCAT GAATCACGTCTTTTATATTAATATTTAGTATATGTTATTTATAATATTATTCTTGTGTTGAATTTACATTGCAAATGATT GTTCATACATTGTAGACAAAGTGTTAAATAAATACTTTAACATCCCTGTATTAATTATATATAGTGGAAAAATATTGAGC GCATTATTAGAATATAATAAAATCATTCATGTGGCTCTTACCCAACAACTTAAGTTTAGGGATAATTAGTTACTTGACAT GGTATTAGAGTGTTATGACCAAGCGGTCCAAAGTTCGATCCATGCCGCTCCCCAATTCTTCTAATTAAAAGTTGAATTAA AAAAAAACACATGATAGGCGGGTTTGTGTCTTAACCACAACGCTTCAAGTTCAAGGGCTTTTGCGTGAGGGGACGAAGAA TATAATAAAACCATTCATGTAGCACTTACCTAACAGCTTAAGATTTTAGGATAATTGATTACATGACACACAAAAGTAAT AGTGGAAAAATTTAAAATGATGAATATTGAATGAATTTTGATATATAACATCTATTGTTCATATTGCATTCCTTGGCTTA TCACAAATATATGCCATGATATATGTAGATATTCCAAACACCTCATCATTTTCCTTTTGACTTATAAAATGGCTCAAGTC CCTTTTTTTCCCTTTCTAAACAGATTGGAGAATTGGCAGGGATTGCTGTTGGCATGACAGTCTTAGTAGACGTCTTCGTT GCTGGGTAATTTAACTATAAATTATATTGAGAGAAATTTATATAATTTAAATTTAAATTTATTATTCATGATTACATGAT TAACTATATTAGATTATTCAAATTTAAATCTAGTTACTCATATATATAGTTTTTTTTTTTTTGGTCACTACTCATATATA TAGTTGAATGTTTGGTATTGGAATCAGGCCTGTGTCAGGAGCATCTATGAACCCAGCCAGAAGCATTGGACCTGCTTTGG TGATGCACATTTATAAAGGATTTTGGATTTACATAGTTGGACCCTTTCTTGGTGCCATATTAGGTGCCTCAGCTTATAAC CTTATTAGATTTACTGATAAGCCTCTAAGAGAAATCAGCCAAAGCTCAAGTTTCCTCAAAAGCGTATCTAGAGGTGTTCG CTAGACGCAGGCCATCATTTTAAATCACTTTTAGATGTTAACTGCTTGACTACAATAAGGCGATGTCTCGAACCAATACC GAGTGTAAAATTAGAATTTTATTTTTAGAATTTGTATGTAATTATATACATCTTTCAATTTGTACAACCTTTCAAAATAT AAAGAATATGATCTTTTTGAAGAAGGATGGTGAATAAGCATGATATAAATACAATTTTGTTCATAATTTTAGCAATTGGT TGTATAGCTCAATTGGTAAAGTGAGTGTTTTGTCAATACAAGGTTCTTACCTTCTTGGTTTGGATCCCCCCACCCATTTT TCCAAGTTCTGAATTTTGTTTAATGACGTGTAACCCCACGTAGGATGCTGACGTGACATTTAATAGCACGTCGTACATTT TTTAAC
CDS sequence (LotjaGi4g1v0078600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTACCGATGAGATTACGAAAATGGAAGAAGGTGGACTTAAGCCCGAAAGGGAGTCTGGGTTTTGCGGTTCTCCTGA GGTAGTTCAAGTCATACAAAAGGTAATAGCAGAGGTTATAGGGACATACTTCTTGGTATTTGCAGGGTGTTGTTCTGTGA TTCTAAACAAAGTGGAAGGAAGTAAAGGGACAATAACGTTTCCAGGAATTTGTGTGGTATGGGGTCTAACAGTAATGATC TTGGTTTATTCTCTTGGTCATATATCTGGTGGCCATTTCAATCCAGCTGTTACTGTCAGCTTTGCAATCTATCGTCATTT CCCTCTGAAACAGGTACCTCTGTATCTTATAGCGCAGGTGCTAGGATCCATCCTTGCTAGTGGGACATTGTTCCTTCTAT TTGATCTTGATGAGAATTCTTATTTTGGAACAACACCAGCAGGATCTCATATCCAGTCTCTAGTATTCGAGATCCTAACA TCATTTCTCTTGATGTTTGTTGTATCAGCAGTTGCCACTGACAATAGAGCAATTGGAGAATTGGCAGGGATTGCTGTTGG CATGACAGTCTTAGTAGACGTCTTCGTTGCTGGGCCTGTGTCAGGAGCATCTATGAACCCAGCCAGAAGCATTGGACCTG CTTTGGTGATGCACATTTATAAAGGATTTTGGATTTACATAGTTGGACCCTTTCTTGGTGCCATATTAGGTGCCTCAGCT TATAACCTTATTAGATTTACTGATAAGCCTCTAAGAGAAATCAGCCAAAGCTCAAGTTTCCTCAAAAGCGTATCTAGAGG TGTTCGCTAG
Protein sequence (LotjaGi4g1v0078600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTDEITKMEEGGLKPERESGFCGSPEVVQVIQKVIAEVIGTYFLVFAGCCSVILNKVEGSKGTITFPGICVVWGLTVMI LVYSLGHISGGHFNPAVTVSFAIYRHFPLKQVPLYLIAQVLGSILASGTLFLLFDLDENSYFGTTPAGSHIQSLVFEILT SFLLMFVVSAVATDNRAIGELAGIAVGMTVLVDVFVAGPVSGASMNPARSIGPALVMHIYKGFWIYIVGPFLGAILGASA YNLIRFTDKPLREISQSSSFLKSVSRGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 15 | 257 | 243 | 6.1E-119 | – | |
| PANTHER | 15 | 257 | 243 | 6.1E-119 | ||
| Gene3D | 22 | 257 | 236 | 3.5E-69 | ||
| Pfam | 29 | 241 | 213 | 4.5E-61 | ||
| SUPERFAMILY | 30 | 254 | 225 | 1.19E-67 | ||
| CDD | 33 | 244 | 212 | 4.62511E-62 | ||
| PRINTS | 33 | 52 | 20 | 4.1E-47 | ||
| Phobius | 35 | 55 | 21 | - | – | |
| TIGRFAM | 37 | 241 | 205 | 6.5E-58 | ||
| TMHMM | 39 | 56 | 18 | - | – | |
| Phobius | 56 | 66 | 11 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 67 | 85 | 19 | - | – | |
| PRINTS | 74 | 98 | 25 | 4.1E-47 | ||
| Phobius | 86 | 90 | 5 | - | – | |
| Phobius | 91 | 107 | 17 | - | – | |
| ProSitePatterns | 92 | 100 | 9 | - | ||
| Phobius | 108 | 113 | 6 | - | – | |
| PRINTS | 111 | 130 | 20 | 4.1E-47 | ||
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 114 | 134 | 21 | - | – | |
| Phobius | 135 | 153 | 19 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 154 | 172 | 19 | - | – | |
| PRINTS | 156 | 174 | 19 | 4.1E-47 | ||
| Phobius | 173 | 183 | 11 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 184 | 203 | 20 | - | – | |
| PRINTS | 187 | 209 | 23 | 4.1E-47 | ||
| Phobius | 204 | 222 | 19 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 223 | 244 | 22 | - | – | |
| PRINTS | 224 | 244 | 21 | 4.1E-47 | ||
| Phobius | 245 | 269 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0078600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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