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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0079900 |
| Transcript ID | LotjaGi4g1v0079900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330; TrEMBL-Plants: tr|A0A072UNF3|A0A072UNF3_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0079900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10434823..10435846) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATGTCAAGTGTGGTAAAATTCACTCTGCTGAGAAGTTATTCAATAATGGATTTCATTTAAAAGATGTTATACTCTG TAACTCCATGATTATGGGTTATGGAATGCATGGTCATGGACATCATGCACTTGGTGTCTTTGATAGAATGATTGGGGAGA GGCTCAAGCCAAATCAAACTACATTTGTTTCTCTGCTAACAGCTTGCAGTCACTCAGGCCTTGTTGAAGAGGGTAAGAGT TTGTTCCATTGTATGGAAAGAGATCATAACATTAAACCTAGTGACAAACACTATGCTTGTGTTGTGGATCTTCTTAGTCG AGCAGGCCGTCTTGAGGAAGCAGATGCATTGGTGAAACAAATGCCCTTCAAACCCAGCACTGATGTGCTTGAAGCTTTGT TCAGTGGTTGCAGAACCCATAAGAATATTAATATGGGGATACAAATTGCAGATAAATTAATTTCTCTAGATTACTTGAAT ACTGGAATTTATGTAATGTTATCTAATATATATGCCGAAGCAAGAAGATGGGAGTCCGTGAATCATATACAACGCCTCAT GAGGATACGGGGCTTGAAGAAAACACCTGCATATAGTTTGATTGAAGTAGGCAACAAGGTTTACACATTTTTTGCTGGAG ATGATGCCCATCCTGGCTGGGAAGAAATTAATCAGTTCTTAGAAAATTTGAGGCTTGAGGTGGAGGCTTCTGGTTATGTT CCTGACACTAGTTGTGTTCTTCGTGATGTAAATGAATCAATGAAGGTTAAGTTGCTCTGGGGACATAGTGAGCGTTTAGC TATTGCATTTGGTCTGTTAAGGACACCTTATGGAAGCTCGATTAGGATCACAAAAAATCTTCGTGTCTGTGTTGACTGTC ATAGTGTCACCAAACACATATCAAAAGTAGTTAAGAGGGAAATAATTGTCAGGGATGCTAATCGTTTCCATCACTTTGTT AATGGTGAATGCTCATGTAATGATTACTGGTAATGAGGACATGCTGAGAACCAGTGGCCAAGTG
CDS sequence (LotjaGi4g1v0079900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTCAAGTGTGGTAAAATTCACTCTGCTGAGAAGTTATTCAATAATGGATTTCATTTAAAAGATGTTATACTCTG TAACTCCATGATTATGGGTTATGGAATGCATGGTCATGGACATCATGCACTTGGTGTCTTTGATAGAATGATTGGGGAGA GGCTCAAGCCAAATCAAACTACATTTGTTTCTCTGCTAACAGCTTGCAGTCACTCAGGCCTTGTTGAAGAGGGTAAGAGT TTGTTCCATTGTATGGAAAGAGATCATAACATTAAACCTAGTGACAAACACTATGCTTGTGTTGTGGATCTTCTTAGTCG AGCAGGCCGTCTTGAGGAAGCAGATGCATTGGTGAAACAAATGCCCTTCAAACCCAGCACTGATGTGCTTGAAGCTTTGT TCAGTGGTTGCAGAACCCATAAGAATATTAATATGGGGATACAAATTGCAGATAAATTAATTTCTCTAGATTACTTGAAT ACTGGAATTTATGTAATGTTATCTAATATATATGCCGAAGCAAGAAGATGGGAGTCCGTGAATCATATACAACGCCTCAT GAGGATACGGGGCTTGAAGAAAACACCTGCATATAGTTTGATTGAAGTAGGCAACAAGGTTTACACATTTTTTGCTGGAG ATGATGCCCATCCTGGCTGGGAAGAAATTAATCAGTTCTTAGAAAATTTGAGGCTTGAGGTGGAGGCTTCTGGTTATGTT CCTGACACTAGTTGTGTTCTTCGTGATGTAAATGAATCAATGAAGGTTAAGTTGCTCTGGGGACATAGTGAGCGTTTAGC TATTGCATTTGGTCTGTTAAGGACACCTTATGGAAGCTCGATTAGGATCACAAAAAATCTTCGTGTCTGTGTTGACTGTC ATAGTGTCACCAAACACATATCAAAAGTAGTTAAGAGGGAAATAATTGTCAGGGATGCTAATCGTTTCCATCACTTTGTT AATGGTGAATGCTCATGTAATGATTACTGGTAA
Protein sequence (LotjaGi4g1v0079900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVKCGKIHSAEKLFNNGFHLKDVILCNSMIMGYGMHGHGHHALGVFDRMIGERLKPNQTTFVSLLTACSHSGLVEEGKS LFHCMERDHNIKPSDKHYACVVDLLSRAGRLEEADALVKQMPFKPSTDVLEALFSGCRTHKNINMGIQIADKLISLDYLN TGIYVMLSNIYAEARRWESVNHIQRLMRIRGLKKTPAYSLIEVGNKVYTFFAGDDAHPGWEEINQFLENLRLEVEASGYV PDTSCVLRDVNESMKVKLLWGHSERLAIAFGLLRTPYGSSIRITKNLRVCVDCHSVTKHISKVVKREIIVRDANRFHHFV NGECSCNDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 187 | 187 | 1.4E-53 | – | |
| Gene3D | 1 | 209 | 209 | 1.5E-35 | ||
| Pfam | 22 | 70 | 49 | 1.2E-8 | ||
| ProSiteProfiles | 23 | 57 | 35 | 9.997 | ||
| TIGRFAM | 26 | 58 | 33 | 4.3E-6 | ||
| ProSiteProfiles | 58 | 93 | 36 | 8.473 | ||
| ProSiteProfiles | 94 | 124 | 31 | 7.443 | ||
| Pfam | 98 | 121 | 24 | 0.1 | ||
| TIGRFAM | 98 | 121 | 24 | 0.0024 | ||
| ProSiteProfiles | 160 | 194 | 35 | 6.993 | ||
| Pfam | 198 | 319 | 122 | 1.5E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0079900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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