Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0080200.1

Overview

Field Value
Gene ID LotjaGi4g1v0080200
Transcript ID LotjaGi4g1v0080200.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT2G16720.1 myb domain protein 7; Swiss-Prot: sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4; TrEMBL-Plants: tr|I3S556|I3S556_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0080200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:10482263..10483767) extracted from Lotus japonicus Gifu genome v1.2.

TATATTGCTTCCTGTGAGATCTCATCACCCGCTCGATCCCTTTGCATTTCTTCACTTTCTCTAACTCTTGCTCTTATTAT CCCTCCTTCTTCCATGCTTCCATTTCTAGCTAGCTACATACCCCTTTGAACAAACCTAAGTAAAAAAATGAGGAAGCCTA ATTGCTGTGATATCAAAGACATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATTGATTATATCAAGAAA AACCGCAAGATTTGTTGGCGTACACTCCCTCAAGCTGCAGGTGTCCCCGCAACGTAACCCTACATTTTGTCAATCATATA TATGTGTATATATCATATGAATTTATGTGCGATATATTTACCAATCCAATTTGGTCATGTTGATTAGGTTTACTTCGATG CGGTAAAAGTTGCAGGCTGAGATGGATAAACTATCTTCGGCCTGATCTTAAAAGGGGCAACTTTGCTGAAGATGAAGAAG ATCTCATCATCAAGCTTCATGCTCTACTAGGAAACCGGTGAGAATTTTATCATAACCATAGCGAGAACTATGTCTTTTAT ATGTAACAGCCAGTAAATTTTTATATGCTAAACTAATTTGCTTAGAAATCCTTTTCATATGTACCATGCATGCACGGTTT TCTCGGTCCATTATTATATGCAAAGCTTCCAGCATTTATAAAAATGAAGAAAATAAAAGTATGTTTGAACTTTGAAGCTT TGCTATTTGGTACCTGACTATGAGTGTGATCAGAAGAGAGAATATGGGGAAATAACAGAATAAATATTAGAGATCATGAG AATTAGTTTAATGTTTTGGTTAAATGGACCTCGTATAATTCATTGTTTTGGTTATCCAAATTAAATTTAATTCAATTTTT TCTATTGATTTCTATAGGTGGTCCTTAATAGCTGGGAGATTGCCTGGACGTACAGACAATGAAGTGAAGAACTATTGGAA CTCTCATTTAAGAAGAAAGCTAATCAGCAAGGGTATTGATCCAAACAATCATCGTTTAACCCCCAAAATCCCTCCCGTGA ATCAAAACCCACCCAATATGTCAGATAGTTCAAAATCTTCTGACTTGAAAATCATTAGCAAGAATGAGACAAGTAAAATC CATTATGTTGATATTAATTACAGTGAAGTCTCAAATGTTGCATGTGGTGAAGAAGAGTCATATGCACTGCCAGATTTAAA TCTTGACCTCACTATGAGCATCCCTTCACCTTCACCAAGTGTTGCTGAAAATAATCTAAAACCAATTCATGAATTCATGA AGTCATCTACAATACACCATTTTGTTACCCCTCCAACACTTCTTCTATTTCAGTGATCAAACTTTCCCCCGGCCAAATAG GATTTTTAGCAAATTGATTGATTGGATCCAGGGTGAGCGTACATGTACGTATCAAACATTTATTTGTACTGATCGTGTAA AGGTTATGAATGAATAATTCATTTTTTTAATGTATATTAAGGATATGGTGACAATATGATTCGGC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0080200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGAAGCCTAATTGCTGTGATATCAAAGACATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATTGA TTATATCAAGAAAAACCGCAAGATTTGTTGGCGTACACTCCCTCAAGCTGCAGGTTTACTTCGATGCGGTAAAAGTTGCA GGCTGAGATGGATAAACTATCTTCGGCCTGATCTTAAAAGGGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAG CTTCATGCTCTACTAGGAAACCGGTGGTCCTTAATAGCTGGGAGATTGCCTGGACGTACAGACAATGAAGTGAAGAACTA TTGGAACTCTCATTTAAGAAGAAAGCTAATCAGCAAGGGTATTGATCCAAACAATCATCGTTTAACCCCCAAAATCCCTC CCGTGAATCAAAACCCACCCAATATGTCAGATAGTTCAAAATCTTCTGACTTGAAAATCATTAGCAAGAATGAGACAAGT AAAATCCATTATGTTGATATTAATTACAGTGAAGTCTCAAATGTTGCATGTGGTGAAGAAGAGTCATATGCACTGCCAGA TTTAAATCTTGACCTCACTATGAGCATCCCTTCACCTTCACCAAGTGTTGCTGAAAATAATCTAAAACCAATTCATGAAT TCATGAAGTCATCTACAATACACCATTTTGTTACCCCTCCAACACTTCTTCTATTTCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0080200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRKPNCCDIKDMNKGAWSKQEDQKLIDYIKKNRKICWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIK LHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLISKGIDPNNHRLTPKIPPVNQNPPNMSDSSKSSDLKIISKNETS KIHYVDINYSEVSNVACGEEESYALPDLNLDLTMSIPSPSPSVAENNLKPIHEFMKSSTIHHFVTPPTLLLFQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF550
5 206 202 2.5E-89 –
PANTHER
PTHR10641
5 206 202 2.5E-89
IPR015495
ProSiteProfiles
PS51294
9 61 53 13.5
IPR017930
Gene3D
G3DSA:1.10.10.60
11 67 57 8.9E-16 –
SUPERFAMILY
SSF46689
11 108 98 4.97E-25
IPR009057
SMART
SM00717
13 63 51 6.4E-11
IPR001005
Pfam
PF00249
14 61 48 2.6E-11
IPR001005
CDD
cd00167
16 61 46 2.17883E-8
IPR001005
ProSiteProfiles
PS51294
62 116 55 26.906
IPR017930
SMART
SM00717
66 114 49 1.0E-15
IPR001005
Pfam
PF00249
67 112 46 2.7E-14
IPR001005
CDD
cd00167
69 112 44 2.85768E-11
IPR001005
Gene3D
G3DSA:1.10.10.60
69 132 64 4.7E-19 –
MobiDBLite
mobidb-lite
126 150 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0080200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…