Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0082300 |
| Transcript ID | LotjaGi4g1v0082300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcyclin-binding protein; TAIR: AT1G30070.1 SGS domain-containing protein; Swiss-Prot: sp|Q9CXW3|CYBP_MOUSE Calcyclin-binding protein; TrEMBL-Plants: tr|I3SHE7|I3SHE7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0082300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10766426..10769241) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAGAATCTTCTCTAATGGGTAATAGTGGGAAAACCCTAATAATGAAGAAATAGCAAGAACCCCAAATTACCCCTTAA TATATGTAACGTGGATAGTTTTCTAGCAGCTTCTTCTAGCATTTTCCAAGCGACACTACACAGGTGCATCACTATCATCA TCGCCTCGCTTCAATTCGGTGAAAAAATGGCGGAGGAATTTGCATTGGATTTGGATGAGCTTCGTCACCTTCACTCCATC GCCAAACGACCTCGAACCCTCTCTCTTCTCTCCTCTGAGATTCGCAACTTGGAGAAGGTTTTCTCATTTCCCAAAATTTG ATTCAATTTTGCAATCGTTTTTGCATGATTGCTAAGTGGGTATTGTTGTTTGATTTGTTTTTGTTTTTGCAGTTATCATC AGAGTCATCTTCTGCACGGGCAGCACAGATTCCAGCCCCAATTGCAACGGGGACTAAGGTGTCACCTACAGTTGCTCTGA GCTATTCTCCACTTGCATCATTCAGTTGGGATCAGGACAATGAAAAAGTTAAGGTAATGACTAATGAGCATGTAATTCAA TTTTTGACATATTTGCAATGGTTGAGAAATAGATGTAGTTTAAATTAGTTTGTGTTATCTACATGAATTTGAATTTGGGG TTGTTCTGTTTTACATTAATAATCAGCTCATAGGGTTTGTGTTTTGAATTATATAGTCGCGGTATCGTATCTTTGGTGGG GGTATGTATGGATATTCATTTTCTATAGACTCACAATAATCCACAAGCTAAATTAGTCACCTGTGAAACTGAATGATGGA ATTAAGCACTTACAAAATAAACATTCCACATATCGCATCACTTGGGGGTATTCTGATGGGAAAAATGGTTCGTCATACAC CAAATCCAATCACACTTGGAGTAGCAATTAAGTAGGAAGAGAAATGAGTTATATGATATGTGATGTGATAGGAAAATAAG TGAGAAATAGGAAGAGAAAGTGATTGGAAAATGAGATAGAAGAGAAAGTGGAGTGTGAATGTATTAGAACTCATTCTTAT TACTTAGCATTTGATGGTAGGATATAGTCCCTAAAATTAGTGGAATGAAATTGTTTGGTTATTTTATGAAACAACAAAGG TTCTTTTCTTTTTGGGATGTGAAACAACAAAGGTTCTTTTCTTTTTGGTAAAAACTGTAGTAGATAATTAGTTGATCATC TCATATTCCTTGGATAGAAGGAAGACATAAATGTATTTGACATAATGGGGTATACTATATGTTAAATTTTATTTTATCTT ATTTTCAACAACCTAAACAATGACAATTAGGCTAAGACCTATGCCTAGACGGTGTTTTTTTGTCAATAGCTGCAAATTTT TCCTGATGACTGTTTCTGTTGTATGCAGATATATGTGTCACTGGAGGGAGTTGATGAGAGTAAGATTGCATCTGAGCTTA AGCCAAGCTCATTGGATTTGAAGTTCCATGATATTCAAGGGAAGAACTATCGATTTGCAATATCAAAATTGCACAAGGAG ATTGTACCAGAGAAATGTAAAGTTCTGGTCAAGCCTACAAGGGTAATCATCACATTGGTGAAGGCTTCCAAAGCAAACTG GCTAGATTTGCACTTCAAAGAAGAGAAGGTACTAAATACTGAATTAGACGACAGCGTCTTTCCCTATCAATCATTGTGAT AATGTAGTAATTTTTCTGTTGATGTTACAGCTGAAGCCGAACCTGGATAAAGAGAAAGACCCAATGGCAGGAATCATGGA CTTGATGAAGGTTAGACTTTCTGTTTTATCTTTAGTTAGTTGAAGCTACTTTGTATCCGTCTTATGCATGCGCATTCAAT CTGACTTCTATTGTGCATGTAATGGAACACAGAATATGTATGAGGAAGGAGATGAGGAAATGAAGAAAACAATTGCGAAA GCATGGACTGATGCCAGATCTGGAAAAGCTGCTGACCCTTTGAGTAGCTACCGTTGAGGAACCAACAGTGATATAGATGT TCAGTTCCTGTTTCTTGAGAATCGTTTGCTCCATTTGATTGCGTGATTTTATGTTCTTATTGACTAGTTGGCTATCTTCA TGGCACTTGCAGACTAGTAGATGTGCAGTTATTGTTGCTTAAGTTCCTATTTATAAAAGAAATTTTGTGGGTGTTCAAAT GTATGCTTGTTCTATAAGCTGTTTTTGCTCGCCTTTTCATTATTGCTTTGAATCCAATTCCCCTGGATTCCTTTGATTGT GGAGGATCCTCTGCAGGTCCTTTTTTTATGAACAGGATCCTCTGAATTTCTTAGTGTAATAGAAGAAGCTAAGTAGTTAG AGCCTCTTTCGATATGGACTAAAGTGGATTTATTGGAGCTTAGAAAAAACACGGGATAAGTTCCATTAGGTGCAACGAGC CTAAGAACTAAGAAGAGAGCCAATCAGCTATCCCCTGTATTCTTGTTGTTCATATTGATCTTTGATAAAAGTTGCTACTT ACTAAGGGATTTCAGGAGTTGGGATGTTAGCTATGCATTTGCATAATTTCATTTGCGGGTGTGAGAGTGTGGGATGGATT TGAGGGAACCCTATTCATGTGAAAGCATATCCCGCAGCAAAACTATGATTGTTCTTAATTATGTCCAGTGTGTTTGGGAG AGGGTTAGTAGAACAAATGTTGCTTTCAACATGCAATGGAAGTCTGCATGCCTTCAGCTTTGAGTAAATGGTTAAATTGG TCCCTTGAAAGTGTTCGGCGCTGGTGAGTTCATTCCTAAAAGAAGGAAATACTCTCCCTAGAAGAAGGAAATGCCCTTGT GGTCCTTGATTGTGTA
CDS sequence (LotjaGi4g1v0082300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGGAATTTGCATTGGATTTGGATGAGCTTCGTCACCTTCACTCCATCGCCAAACGACCTCGAACCCTCTCTCT TCTCTCCTCTGAGATTCGCAACTTGGAGAAGTTATCATCAGAGTCATCTTCTGCACGGGCAGCACAGATTCCAGCCCCAA TTGCAACGGGGACTAAGGTGTCACCTACAGTTGCTCTGAGCTATTCTCCACTTGCATCATTCAGTTGGGATCAGGACAAT GAAAAAGTTAAGATATATGTGTCACTGGAGGGAGTTGATGAGAGTAAGATTGCATCTGAGCTTAAGCCAAGCTCATTGGA TTTGAAGTTCCATGATATTCAAGGGAAGAACTATCGATTTGCAATATCAAAATTGCACAAGGAGATTGTACCAGAGAAAT GTAAAGTTCTGGTCAAGCCTACAAGGGTAATCATCACATTGGTGAAGGCTTCCAAAGCAAACTGGCTAGATTTGCACTTC AAAGAAGAGAAGCTGAAGCCGAACCTGGATAAAGAGAAAGACCCAATGGCAGGAATCATGGACTTGATGAAGAATATGTA TGAGGAAGGAGATGAGGAAATGAAGAAAACAATTGCGAAAGCATGGACTGATGCCAGATCTGGAAAAGCTGCTGACCCTT TGAGTAGCTACCGTTGA
Protein sequence (LotjaGi4g1v0082300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEFALDLDELRHLHSIAKRPRTLSLLSSEIRNLEKLSSESSSARAAQIPAPIATGTKVSPTVALSYSPLASFSWDQDN EKVKIYVSLEGVDESKIASELKPSSLDLKFHDIQGKNYRFAISKLHKEIVPEKCKVLVKPTRVIITLVKASKANWLDLHF KEEKLKPNLDKEKDPMAGIMDLMKNMYEEGDEEMKKTIAKAWTDARSGKAADPLSSYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 1.7E-113 | – | |
| Pfam | 3 | 51 | 49 | 9.8E-7 | ||
| SUPERFAMILY | 3 | 37 | 35 | 9.16E-5 | ||
| Gene3D | 68 | 167 | 100 | 5.9E-26 | ||
| ProSiteProfiles | 69 | 159 | 91 | 13.756 | ||
| CDD | 71 | 159 | 89 | 1.53217E-32 | ||
| Pfam | 73 | 149 | 77 | 1.6E-14 | ||
| SUPERFAMILY | 74 | 172 | 99 | 1.92E-26 | ||
| ProSiteProfiles | 144 | 218 | 75 | 16.382 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Tubulin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of tubulin, including microtubules. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. | ||
| Molecular function | S100 protein binding | Interacting selectively and non-covalently with a S100 protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS. |
Expression pattern of LotjaGi4g1v0082300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…