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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0082400 |
| Transcript ID | LotjaGi4g1v0082400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0082400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10781259..10786377) extracted from Lotus japonicus Gifu genome v1.2.
ACTAGCTCTTCCCGAACAAGAAACCCTCACCCTTCTCAACTCTACTCTTCTTCATTGGTCACACGCAAGCAAAGTCTGTT GCGGTCAGTTCTTCCCGTTTGCAGTGTGATACCCTCATTGTGCTTTAGACCAAACCCCGTAGCAACCTTAAACAACACCA ATTCTATCTTCGAATGATGCTATCCTCTCCTCGTGTTTCAATGTCGTCATTTTTAAGGTTAAACAACTTCCCTGTTGTTT CAAAACCCTCTTTTCATTCTCACTCTCTGTCTCCTTCCATTCACAATGCTGATGATGCTATCTCCATCTTCAATCGCTTG CTCGGAACTAGTCCTACCCCATCCATCATCGAATTCGGTAAGATTTTAGCTTCCCTCGTCAAGATGAAGCATCACCGCAC TGCAATTTCCCTTTCTCACAAAATGGAATCTAGGGGAATTATGTCTAACATTGTTGCTATGAACATCTTGATCAATTGTT ACTGCCACCTAGGTCAAATACCTTCCGCCTTTTCTGTACTCGGTAAAATTCTCAAGAAGGGTTATCGGCCGGACGCCGTC ACCTTGACTACACTTATCAAAGGTCTCTGTCTTAAGGGTGAGGTTCGGAGAGCACTGCAATTTCATGACGATGTGGTAGC ACGGGGGTTTCGGTTGAATCAAGTTAGTTACGGGACCTTGATCAAGGGATTATGTAGGATGGGACAAACAAGAGCTTCAC TGCAGTTGTTGAGACAAGTTGAAGGGCATTTGGTTAAGCCTAACGTGGTAATGTACAACACCATAATTGATAGTTTGTGC AAAGATAAACTTGTGAGTGATGCGTTCAATTTATTTTCGGAAATGGTTGTCAAGAAAGTTTCTCCTGATGTTGTCACTTA CAATTCTTTATTATATGGCTTTTGCATTGTGGGTCAGTTGAAAGAAGCAACTGAGTTGTTAGATGAAATGACGAGGAAAA ACATCGGCCCAGATGTTATTACTTTTAATACATTGGTCGATGCTCTGGGTAAAGAAGGAAATGTGAAAGAAGCTAAAAAT GTGTTAGCTGTGATGATGAAACAAGGTGTGAAGCCTGATCTTTTTACTTATAACTCTTTAATGGATGGATATTGCTTAGT TAATGAAATAAACAAGGCCATAGCCATATTGAACTCCATGGCTCAAAGGGGAGTGACTCCTAATGTTCACAGCTACAGTA TCATCATTCACGGATTATGTAAGAATAAAATGGTGGATGAAGCTTTGAATCTCTTTGCAGAAATGGAATGCATAAAGATT ATTCCTGATACAATAACTTACAGTTCTCTTATTGACGGTTTATGCAAATCAGGGAGAATCTCTCATGCTTGGGAGCTTGT TGATGAGATGCACAATAAAGGTCAACCAGCCGATAAGTTCACCTACAATTCTTTACTGGATGTCTTATGCAAAAGTCATC ATGTTGACAAGGCAATTGCTTTAACCAAGAAAATGAGAGATCAGGGTATTCAGCCAGATGTTGTCACATACAATATACTT ATGGATGGACTATGCAAAGAAGGAAGACTTAAGAATGCACAAGAGGTTTTCCAGGATCTTGTAATTAAAGGCTATCATGT AACTGTCCGAACATATAATATTATGATCAATGGGCTATGTAAAGAGGGTTTGTTTGATGAAGCATTGGCCTTACTGTCAG AAATGGAAGACAAAGGTTGTATTCCTGATGCTATAACTTTTGAAACAATCATCTGTGCTCTCTTTGAAAAGGGTGACAAT TATAAAGCAGAGAAGCTTCTGCGTGAAATGATGGCGAGAGGTCTATTGGAAAAGTAAAACTCGGTAAGATGCTTTCTAGT TACACATTATGTTATTTTCAATTTCTATGATGACTATCTTATATTTATTTATTGTTCTAGGCACACACACAAAAAGGAAG ATGTACTACACAACGGACTCACTATTACTTTAGCTATGATAAAAGGCCATATGTTACTGGGTTCATTTTAACATTGTCAT GATACCAATAGTCCATTTTTCCAGTCTCGATATAACTGTCCTTCTTCTCCTCTTCTTCCTTTTCTAATGTTAATTAGATT TTTTTCATACTGTAGTTCTTCCAGCAGCCTTGCACCAAACTTTTCCTCTCACTTTCAGAAGATCATGGGTATATTTCCTT CTTGTGAAATGAAAATGCCTTTCTTGCTCGTTGCTCTTTCCATCCCAAGAAAGTACTTCTAGTGTCCAAGGTCCTTTGCC TGTATTTTTCTACACATTAACATAAAGAGAAGTTTTTTCTAGAGACGTTGCTTATTGAACTCATTGATCTTGATATGTGT TGCTTCTGCCAGAAGCTATCTGAGATCTCATTTGTTTTCTTTACACATAAACTCAGTTGATTGTATAACTGCAGTTTTTC TTGTTAAGTAACTGTAATTTTTAGATTGAGAAAAAAGAATAATTTCTAGACATTAACATGTTTAATGCTAGTGGTGTAGT CTTATTAGTTTGGAAATGCACCATAATCTCTCTCTTCCTTTGAGTATAATCTTGTTTAAGTTTTCCTTTGTTGATGATCC ATGTTGTATGTACTGCAGCTTTGTTAAAGTGGTACTTATCTGATTTGCTTTGAAGCAATCTTTTGGAGTGCATAATTGTC ACTATTAGAGCTTATCCTGTTCAATATCATGAAGACTTATATACTTACCATATTCCAGACCTAACATGCTCATTGTATAA TTGAATAGGCGGTTTTCCCCAGCTCTAGAGAGCGTTGTCTATCATCTGCGCTCTTTGAATATGTGAAGAGACAAGCAGAG AGCATGTTCTTCGAGCACTGAACTTGCACAAATCCTTATTAGTATTTTGCTTCTTAAATAAAAGTTGGAGGCAATTGTAG CATCTCATTGCAGTTTATGCTTGGCGTAGAGATATCAGATATGCTTTTAACAGGTACATCTGGAAAATAATATGCTTTTC TTTGGCTTGTAAATAATAAGCTATGGATGTTGCTTTTAGATATTTACTTAGTTGCACTGATGTGTCCTGGGGTCACTTGT GGGCATTGTCAACGGAAGTTGTAATTTTCAGGGTTTGCATGTGTAGCATAGAAGCCATCATATGCATAATAGGAATAGCA CCTGGGAGTGTAAACTATTCAGTTCGAGGAATTGTTAAAACTTACTGTAATTTTGAGGATTATTTGTGATTATTTGTTCA CTCATGTGTTGTGTGGCTTTGTTGTGAGGGAAGTGAATTGTGTTGCTACAAGCTAGCAAATTTGGCTTATGTCGTACAGA ATCTTTCACTATTATGGAGGATCCTCCTGTACAATATTTCATTTATTTGAGATATGATTTATTCTTCAAATTTTTAAATT AAAAAAATGAGCCTTATCAACTTTCATTTGTTTTAATCTTGAATAATGGAAGTTTAGTGAACAAATATGCAAATCGGTTT ATGTGCTGTTTCCATTCGAAATAGCTTATTTGCTGCCACTGTTTGGTGCTCCAGGCTCTTAGTTTTTGTCGTGTGTGTCA CCTTTTAGGGGTTCCTGCATTTTTGCGCTATGTAGCTCTGTCTGTGTAATTATGGGGGGGGGGGGGGGGTATCTTGTGCC TTTGTAGCTCTTATATAGATACTGTTCTGTTGGCATAATGCAGTAGGCCTTGGGAGATTTCTTTGTGTATGTTTTGTTTT GCTCTATCCTATGAGATGGGATGGTCTATCTTTACATATCCATGAGAAAGCTGTATCATGTTCCTTAATAATTCCATTAA AACGGTTTTGGTTAAACTAAAATATTTTTATCTTCTACATCATACTCTCATATAAATTGTTTGTATGTAGCTGTTTTATG TATCAAATATTGTTAAACATGATTTAATAAGGCATTTTTTATATCATGATATCTAGGATCCCTAATTGATATTGATAAGA TATTTGCTTTCTCAATTTGATGATGAAATTTTAAACATGCATTGCAGTCAATGTGGACAATGGAGCAATTGTAACAGACA AATATTTGTCTTCCTACATCCCAATCGTGTAAGTTGTCAACATTCCATTCCTGATCACTTTAAATTGATAAAGTTTGAAA TTAATATCAATGAATATGGTGATTGTTATTTTATTTTCATTTATGAAAACGAATTATTTCATCTTTCACAGGGAGATGTC CAGGTTCCTCAATTTTTTATGGATGAGTTTGGAAATAGGATAAGTCATACCGTAACATTGAAAGATCCTTTTGGCAACAC GTTTAATATCTTAGTGTGGAGTTTTGGGAATGTTGTTTCTTTTACGACTGTCATAGCTGATCTGAGACATTATTATCAGT TATGGCATGGTGGTTGGCTTGATTTGTTCTTTCCGATGCTTTGGCTTCTTTGCCTCCCATTTGATTAATGAAAGCATATT TCAAAAAAAGAAGATATCATATATTAGGTTGCAAAATTGTCTTCAATTGCGATGATTGGGATGGATAATTGCAAAATTAT GATGTTTACAAATATTTGAAACAAAAGTTTGGTGAGATCAACTATGTCTAGTGTTGTTGACCATAATATCATATATTTGT TAACTTACATGATTGGAATGGATAATTGGCAATATTTTAAGTGCCACATAGAAACTAGTTAAATACAAATAGATTGTTCC CACACTAGTATAAGATTCTTTCCCACAATGTTGGATTGTTCTCTATCAATTATTAATTTGATTTTGGGCATTCACTGGAC ATTATGTAAATCATAGTCCATCCAACTCTATTCATTCAAGTTGTTTTCTTGTCAAGTGGCAGAATGTAACAATGTAACAA TAGTTTCATTGTACAATGCTGATACCAGGAAACAGATGCATCTTGATTTGCTTCTACTCCAGAAACCGAGAACATAATTC ATATGGATCAAGCAATTTATAGTTGTATTATTTATTTATGGTTTTTTTTGTTGGAATTATTTATTGTTATTTAGGAATTC TCGATTATCTTATTTCATCTATGTAGTAATAGCTCATAAGGGTATTCGTGGCTTCATCAAGTCTATAAATTTCATTTTAA GCATAGGGGAAGTTTGTGACTATGATATATATGCGATCAGGTTTTCTTCAATAAAGAATTATCTAATATTTGAGTCGGA
CDS sequence (LotjaGi4g1v0082400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTATCCTCTCCTCGTGTTTCAATGTCGTCATTTTTAAGGTTAAACAACTTCCCTGTTGTTTCAAAACCCTCTTT TCATTCTCACTCTCTGTCTCCTTCCATTCACAATGCTGATGATGCTATCTCCATCTTCAATCGCTTGCTCGGAACTAGTC CTACCCCATCCATCATCGAATTCGGTAAGATTTTAGCTTCCCTCGTCAAGATGAAGCATCACCGCACTGCAATTTCCCTT TCTCACAAAATGGAATCTAGGGGAATTATGTCTAACATTGTTGCTATGAACATCTTGATCAATTGTTACTGCCACCTAGG TCAAATACCTTCCGCCTTTTCTGTACTCGGTAAAATTCTCAAGAAGGGTTATCGGCCGGACGCCGTCACCTTGACTACAC TTATCAAAGGTCTCTGTCTTAAGGGTGAGGTTCGGAGAGCACTGCAATTTCATGACGATGTGGTAGCACGGGGGTTTCGG TTGAATCAAGTTAGTTACGGGACCTTGATCAAGGGATTATGTAGGATGGGACAAACAAGAGCTTCACTGCAGTTGTTGAG ACAAGTTGAAGGGCATTTGGTTAAGCCTAACGTGGTAATGTACAACACCATAATTGATAGTTTGTGCAAAGATAAACTTG TGAGTGATGCGTTCAATTTATTTTCGGAAATGGTTGTCAAGAAAGTTTCTCCTGATGTTGTCACTTACAATTCTTTATTA TATGGCTTTTGCATTGTGGGTCAGTTGAAAGAAGCAACTGAGTTGTTAGATGAAATGACGAGGAAAAACATCGGCCCAGA TGTTATTACTTTTAATACATTGGTCGATGCTCTGGGTAAAGAAGGAAATGTGAAAGAAGCTAAAAATGTGTTAGCTGTGA TGATGAAACAAGGTGTGAAGCCTGATCTTTTTACTTATAACTCTTTAATGGATGGATATTGCTTAGTTAATGAAATAAAC AAGGCCATAGCCATATTGAACTCCATGGCTCAAAGGGGAGTGACTCCTAATGTTCACAGCTACAGTATCATCATTCACGG ATTATGTAAGAATAAAATGGTGGATGAAGCTTTGAATCTCTTTGCAGAAATGGAATGCATAAAGATTATTCCTGATACAA TAACTTACAGTTCTCTTATTGACGGTTTATGCAAATCAGGGAGAATCTCTCATGCTTGGGAGCTTGTTGATGAGATGCAC AATAAAGGTCAACCAGCCGATAAGTTCACCTACAATTCTTTACTGGATGTCTTATGCAAAAGTCATCATGTTGACAAGGC AATTGCTTTAACCAAGAAAATGAGAGATCAGGGTATTCAGCCAGATGTTGTCACATACAATATACTTATGGATGGACTAT GCAAAGAAGGAAGACTTAAGAATGCACAAGAGGTTTTCCAGGATCTTGTAATTAAAGGCTATCATGTAACTGTCCGAACA TATAATATTATGATCAATGGGCTATGTAAAGAGGGTTTGTTTGATGAAGCATTGGCCTTACTGTCAGAAATGGAAGACAA AGGTTGTATTCCTGATGCTATAACTTTTGAAACAATCATCTGTGCTCTCTTTGAAAAGGGTGACAATTATAAAGCAGAGA AGCTTCTGCGTGAAATGATGGCGAGAGGTCTATTGGAAAAGTAA
Protein sequence (LotjaGi4g1v0082400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLSSPRVSMSSFLRLNNFPVVSKPSFHSHSLSPSIHNADDAISIFNRLLGTSPTPSIIEFGKILASLVKMKHHRTAISL SHKMESRGIMSNIVAMNILINCYCHLGQIPSAFSVLGKILKKGYRPDAVTLTTLIKGLCLKGEVRRALQFHDDVVARGFR LNQVSYGTLIKGLCRMGQTRASLQLLRQVEGHLVKPNVVMYNTIIDSLCKDKLVSDAFNLFSEMVVKKVSPDVVTYNSLL YGFCIVGQLKEATELLDEMTRKNIGPDVITFNTLVDALGKEGNVKEAKNVLAVMMKQGVKPDLFTYNSLMDGYCLVNEIN KAIAILNSMAQRGVTPNVHSYSIIIHGLCKNKMVDEALNLFAEMECIKIIPDTITYSSLIDGLCKSGRISHAWELVDEMH NKGQPADKFTYNSLLDVLCKSHHVDKAIALTKKMRDQGIQPDVVTYNILMDGLCKEGRLKNAQEVFQDLVIKGYHVTVRT YNIMINGLCKEGLFDEALALLSEMEDKGCIPDAITFETIICALFEKGDNYKAEKLLREMMARGLLEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Gene3D | 36 | 189 | 154 | 7.2E-32 | ||
| PANTHER | 38 | 177 | 140 | 6.5E-160 | – | |
| SUPERFAMILY | 38 | 335 | 298 | 4.71E-7 | – | |
| PANTHER | 38 | 177 | 140 | 6.5E-160 | – | |
| ProSiteProfiles | 57 | 91 | 35 | 6.752 | ||
| ProSiteProfiles | 92 | 126 | 35 | 10.939 | ||
| Pfam | 92 | 139 | 48 | 1.1E-12 | ||
| TIGRFAM | 96 | 128 | 33 | 1.1E-5 | ||
| PANTHER | 121 | 314 | 194 | 6.5E-160 | – | |
| PANTHER | 121 | 314 | 194 | 6.5E-160 | – | |
| ProSiteProfiles | 127 | 161 | 35 | 10.194 | ||
| TIGRFAM | 129 | 162 | 34 | 2.4E-4 | ||
| Pfam | 157 | 188 | 32 | 1.4E-5 | ||
| ProSiteProfiles | 162 | 196 | 35 | 10.03 | ||
| TIGRFAM | 164 | 189 | 26 | 0.0018 | ||
| Gene3D | 190 | 262 | 73 | 1.6E-23 | ||
| Pfam | 196 | 244 | 49 | 3.7E-18 | ||
| ProSiteProfiles | 197 | 231 | 35 | 11.74 | ||
| TIGRFAM | 199 | 233 | 35 | 5.6E-9 | ||
| ProSiteProfiles | 232 | 266 | 35 | 12.934 | ||
| TIGRFAM | 234 | 268 | 35 | 1.1E-7 | ||
| Pfam | 263 | 294 | 32 | 7.5E-9 | ||
| Gene3D | 263 | 330 | 68 | 2.6E-21 | ||
| ProSiteProfiles | 267 | 301 | 35 | 12.671 | ||
| TIGRFAM | 269 | 302 | 34 | 1.0E-8 | ||
| PANTHER | 281 | 364 | 84 | 6.5E-160 | – | |
| PANTHER | 281 | 364 | 84 | 6.5E-160 | – | |
| Pfam | 301 | 350 | 50 | 1.8E-16 | ||
| ProSiteProfiles | 302 | 336 | 35 | 12.244 | ||
| TIGRFAM | 304 | 338 | 35 | 3.5E-8 | ||
| PANTHER | 319 | 544 | 226 | 6.5E-160 | – | |
| PANTHER | 319 | 544 | 226 | 6.5E-160 | – | |
| Gene3D | 331 | 402 | 72 | 1.5E-24 | ||
| ProSiteProfiles | 337 | 371 | 35 | 11.893 | ||
| TIGRFAM | 339 | 372 | 34 | 6.6E-8 | ||
| Pfam | 371 | 420 | 50 | 6.2E-16 | ||
| ProSiteProfiles | 372 | 406 | 35 | 12.77 | ||
| TIGRFAM | 374 | 403 | 30 | 4.5E-9 | ||
| Gene3D | 403 | 469 | 67 | 2.8E-23 | ||
| ProSiteProfiles | 407 | 441 | 35 | 12.704 | ||
| TIGRFAM | 409 | 443 | 35 | 8.9E-9 | ||
| Pfam | 441 | 490 | 50 | 4.2E-17 | ||
| ProSiteProfiles | 442 | 476 | 35 | 12.189 | ||
| TIGRFAM | 444 | 475 | 32 | 8.0E-6 | ||
| Gene3D | 470 | 546 | 77 | 2.6E-21 | ||
| ProSiteProfiles | 477 | 511 | 35 | 14.425 | ||
| TIGRFAM | 480 | 513 | 34 | 6.8E-13 | ||
| Pfam | 507 | 539 | 33 | 5.4E-7 | ||
| ProSiteProfiles | 512 | 546 | 35 | 9.339 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0082400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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