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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0083300 |
| Transcript ID | LotjaGi4g1v0083300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60 kDa chaperonin; TAIR: AT5G18820.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q56XV8|CPNA2_ARATH Chaperonin 60 subunit alpha 2, chloroplastic; TrEMBL-Plants: tr|I1KM81|I1KM81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0083300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10906727..10913311) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAACCGGCGATAGGGTTGTTGTGGAGGCGAGAACCGGCGGTGGGCGTGGCGGTGTGTGCGAAAGTCGATCAACAAAA ACAAGAGGAAAATGAAAGGAACGGAAACAAAAACACGAGAGGAAGAGGAAAAAGAAACCCAAGACTCCAAGAGGGAAGAG GAACAAGATCTGAAATGAAATTGAAACAGGGATGGGTGGTTTAGAGGGAAAATTTGAAATGAAATTGGAGTGGTGGTAGT TTTAGAAATTTACTTTTCAAAATAGCATTTTTATCTTTTCACGCCTTAGGAAGGTAAAATTAGATGTGGGGTGATCGGAA TAACAACTACCCGCATCAATAGATGTGGGGTATAAGTATACCAACTCTCTTTTGGTTAATGGGGTGGGAAGAAAATTTGT CTTGGTGAGGCAGTATTTTTGAGTAGCTGCACCTTTGCCAGGGTGAGTAGTACCGAGTTTCGAAACGAGACGAATATGCA AACACAAGCTCATACATGTCTCTCTTCATTCTTCTTCTTCCCTCCGAATCGAAACCCTTTCACTTCATCTTCATCCTCTG TAAGTCTCTTTGCTCGCTCTGCAACACTCTCACCCTCACTTTGGTCCATGCCATATACATATATATGCTTCTTTTCTTTT CGTTTTTTCTGACTTTACGCTGTTGCAGTCTTTTCGTTGGAACCAAATGGCAATTAGGGTTCGGAAAAACCCACACTTTG TGGTGCGCGCTGGTGCTAAGAAGATATCATTCGGTAAGGAATGCAGAGAGGCTTTGCTAGTAGGCATGGATAAACTCGCT GATGCTGTCTCTCTTACTGTAGGACCCAAAGGTTTCAAATTTCAAAATTCTCCTCTTTTTTTTATGTCTTATATGCTACT AATGACTTAGGTTAGCAATTAAATTAAAGTGTGGTCATTTTTATTTTATTTAATTTGTTGCATTGCTTAATCACTAGAAT ATTTTTTTATCACTGTTATATGCATTTCTCCATTGTATTAATTTAAGTGCATGTTTGGTTTGAATTAGATTTTAGTGTCT TTACGGTTTTGATTATAAGTTGTTTTAGCTATAAATAAGCTAATCCAAACAATAACCAAGTGTGTGTTTGTTTTGATGGA CTTTCGCTTCATTCGGTTCCATAAACCATGGTTTTAAATTGCAGTCGTGGTTGTGGTTATATTCCAGAAGAGAAATTCTA GCAACTCTCTCTTTGGCACTCTCTTTCTAACACTCTGTCCTTGCCTGGTTAAAATCCATGTAGTGTCCACTAAATTATAT GGGCTCCACTACCAATTTGGTGGGAATTGTATGAATTTTAACCAATCGAAGTAAGAGTGTTAGAATTGCAGACAAATGCA GGTTGATGCAACCACAATTGCGGCCATGATGCACTCAAAATCCCTTTACATTGCGGACACAATTACAGTTGCGGGCTGCA ATTTAAAACCCTGCTTAGGGGGTGTATTGAGATGAATGTGCTTTTACATTTTGGGTAACATCTAGTGAAACACACCCTAA GATTCACTATTGCTTTTAATTATGTTCAAGCTGCAGATTGCTTGCACTTGAAGCTCTATATTATGTGGTACTTTGACTGA TTATGGTTCAATGTTTTTTTTACCGTTCATGCTTATTTGTTTCACTCCTAACCACACAGGCCGTAATGTTATTCTTTCTG AATCTGGGAAGCTTAAAGTAATTAATGACGGTGTTACAATTGCACGATCCATAGAGCTTGCCGACGCAATTGAGAATGCA GGTGCCATGCTAATTCAAGAGGTTGATCATAGTTGTTAGGTTTTGCCACGGGTTAAAAGGTTGAAACTTGAGACAAAAGT TACCACAGATGTATTTAGGTTTCTATGTTTCCTGCTTGTAGGTTGCGAGTAAAATGAATGATTTGGCTGGAGATGGTACT AGCACTGCAATTATTTTGGCTCGAGCCATGATTAAATATGGGCTATTATCTGTTGCATTTGGGGCTAATCCTATTTCGTT GAGGAAAGGGATGGAAAAGACTGTAAAAGATTTGATCAAGTTCTTGAAGACGAGAAGCGTTCCTGTTGAAGGAAGGGATC ACATTAAAGGTCTTTTCTTCTGCCTGTTTTTGTTTTGTTAAGGTAATATTTTTTTCACATAGGAAGTATTTGAAGCTATT TATTTCCCTGCTTTTGCAGCTGTAGCATCAATATCTGCTGGAAATGATGAGTATGTTGGCAATTTGATTGCTGAAGCTAT AGAGAAGATTGGTTCTGATGGGGTGATCTCCATTGAGACATCTTCAACATCTGAAACCTCCGTCATAATTGAAAAAGGGA TGAAGGTATTGATGATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAA TATTTCTCAATGACAGGCGTCAATTCTTCTTTGTCAGATCTGAATGATTGTTGCCCTTGTATTTTTCACTATTATAGCTA TTTGTTCTTTCTGTACAGATTGATAAGGGTTATATGTCTCCTCACTTCATCACAAACCAGGAGAAGTCCATTGTGGAGTT TGACAATGCTAAAATTTTGGTAACTGATCAAAAGATTTCAAATGTCAAAGAAATCATTCCCTTGCTGGAAAAGGCTATGC AGTTGAATGCTCCACTCGTAATTATTGCAGAGGATATCGCAAAACAAGTGTTGGAAACATTAGTAGTGAACAAAGCACAA GGGTTACTAAGAGTTGCAGTTGTAAAATGTCCAGGATTTGGAGATGCAAAGAAAGCTATATTGCAAGATATTGCGCTTAT GACAGGTGAGTTCCTATGGCACTATGCTTTTCTATTTTCAAATTATTGTCATGAAGCCTACACACAAATAGTTGCTTCTT TTGCTACTATTGACTGACCAAGTATACTGACAAGAAGCTTTTCTATGACATTGCTTTTCGTTTTCATTTATCAATTTTAG TTTGGCAGAGAGCCTGCCTTGGGTACTAAGGCAATAATACCACTTTCTTATTTAATAATTTTCTTATTTTAGTTGCTAAG ATCTGCATGTTTCACCTCATGTTGACATTAACATCACAGGTGGTGATTTTCTTGCTGGAGATTTGGGTCTCACTCTTGAT GGCGCCACATCAGACCAGCTTGGCAATGCACTGAAAGTAACAATAACCAGTAATGCAACAACTATAATTGCTGATCCTAG CACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAAAAGGATCTTATGGGAATAGATAATGCGAACCTTTCGAAAA AGCTCTCAGAGAGAATTGCAAAACTCTCGGGTGGTATAGCTGTTATAAAGGTACCTAATTCAATGCAAGTGTCATGGGTT GTCTGTACTCTGATCATCACTCTTTACTTTGCTACTATTTCTTACTCTTTTCTGATTTTATAAATTCTTGAGTTTTATTG AATCATACATTATTCCTATGCATTTCAACCTGCATGTAACTTGAGAAATGGATATTAGATTATTAATCTTAAACATGGTC ATCTTGGAAGTTTTAGTACCTACTAGCCCTTTATGATGTATTCCTTATATAAGTAAAATCCTGTGAAGTTTTTTCACTTC TATGTCATACTATCACTGATGTTTTATTTATCTTTAATATTATTTCATCTGTGTGATATTTATCTTCTCCTTTATATATT TTCTTCTACTTTATATTTTTTTCTAAATCAAATCAAATATTACAATAGCATTTATATTTTCTATTTCTCCAAGAACTCTA GATGTCCCACTGCCTGTCGTAATGACTCAAGTCATTCTATTTTTATCTTATTGTTTCTCTGAATTCTATGAAATTGATTC TAGATATTGCACCATGTGTACGATAGTCATAATACTTTTGTATGAAGATTTTAGAAAATAAAAAATATGAATAAAAATTG AAATTTGAAACTATGTCCTAAACCATGAAGCAAGATTTATATTTAAATGATTTATCATTCTGTATGATTTACGATTGTGA TATGACTTTAAGACGTGTCATTTGAACCATATAGCCGATCCCACCTAATAGAAAAAAGCTTTTGTTGCTGTTACTGTTGT AGTCAAAATAGAAGTTGCATTTATTTCTTTTTAGAAGGGCTTTACTCACCATTAGTTTGGGTCCTATAAAAGATGTGTTG ATTGAATGCAGTATCCCTTGATCCTTGTTTAGGATATGCATGAACCAAGAAACCCATTGTGTTAATTGCATGGATCATAC TAACTTTCATTTGTTTTCGATATTCATGATGTCTTGATTGCAATTTGTTATACAGAAACAAATAGCTGTGATCTTGAATT TTGCTCAGAATATGTAACATTAGCATTATATTCTAGTGTTAACTGCTTAATGCAATAAACCATTATGTAGGTAGGTGCAC ACACTGAGCTGGAACTTGAAGATAGAAAACTTAGAATCGAGGATGCCAAAAATGCTACATTTGCTGCCATAAATGAAGGG ATTGTTCCTGGAGGGGGGGCTACATATGTCCATCTGTTGGACTTGATACCTACAATAAGGAACTCCATGGAAGATCGAGA TGAGCAAATTGGTGCTGATATTGTGGCAAAGGTAAAATTATATATGTTAATCTACAGTATCAAAGCTTGAAGAAAATAAT TGAGGGAGCCAAAAAAATATTTTCCTCAGAATGACTCATCACGAAAAAATCACTATGGTTTGTCTTAAATCAAAGAGGCT GATGATCTGAAATTGCAATTTCTTATATATTGCATCTGAATCTGATAGTGATTGTAGAGGGATAACCCAAGCCCCATCGG CCTTGAATGTTATTCAGTTATTGGCACTTTATCCCTTGTCAACTCACAATCAAATATTTATGTTGTGTTCAATAATATCA ATTTCATAAATTTGTCATGGCCTACGCAAAGATTGTCTTTTGTGATTGTGTTGGCATGGGATTTAATGTCAATGACTGCC ATCTCAACTTCACGTGACAACTATAACAAATGTACTTTCAGAATTAGGAAAGTAGATTATTGTAAATAGTATCCCTGATT GTTATAGTAGGTTTCAGAATTAGGGAAGTAGAAAGTCTCTTGTGATCTCCTATTTATGGATCCCTGCCATTTAGGAACAC TGAAATATAAACTCAATTAGGCTGAGGAACTCTCTCAAGCAATTCTAAATGCTGTAGAATAGTGGAATCTCAAGTTGATC GTCATCAATGTCAAAAATATCTAGTTATCACTTGATTCACTTTGTGGATTGTCCAAACTTGGACATTGGAGAAACTCCAC TATCTACAGTCGTGTGAAGTTTGCATTAAGAGTTTGAGGGGTGTGTCAAGTCTCCTGTGCAAGTGTGCATTATTCTAGTG GGTTTAGGATTCACCATGTAGCATCATCCACTCCCCAAGATAATGGAATATAATTTTTTTAGCTGAGATATTAGTTCTTA TTTTTAGTTTCTGGTAAAAATGATTTTTTTCTTACTATTTCCCTCACATATAGCTGGATTGAGACTAGTTCTGTGAAAGG TAATATTACTTATGAACTTGTCTTGTATGCTTTTACATATTTGTGAGAGGTTGCACTTGAATAATGGCAGGCACTCCTTG AACCTGCAAAATCAATTGCAACTAACGCTGGAGTTGATGGAGATGTTGTTGTCCAGAAGATTAGAATATTTGATTGGAGA ATTGGATATAATGCAATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCTGATCCTAGTCGAGTTGCAAGATG TGCTCTTCAAAGTGCGGTATCTGTTGCCGGCGTGGTTCTAACAACTCAAGCTATATTGGTGGAAAAAATAAAGACACCCA AGCCACCTGTGCCCATGCTCCCTGGTATAAATCTCTAAAATAGGGAGAGCAATTACAATTTTGAACACGGAGTTGAAGTC TTCTCTGATGTGTACGCCGTTGGTCGAGTCAAATATTGTGAATGTCCCTCGGGTTGATTAATACTCGTGCTGCAATTAGA ATGTTCCTTCAAGGATGGAAAAATGAGGGTTACTGCTTCTTACTCTTGGGTTATGATTTGATGAAACCCACGTATCATGA AGCAAAAGGAACAATTAGCAACAGCCAACAGGTGAAGTTCAATTTTGATTGAAGGAAGTTGTGTAGTGTTAGGTTTCTTT CCCCATTTTATTGATTCATTTTACAGTGACACTTAGCTGACAATAGTTTTGTTCCGTAAGAGCTTTAATATGATATTGTC AAGGGAATGTTTATAAACTCTGATTTAGCCGTATCATGGAATCTGCTTGAACAGGTACTTTCCTCTCCTGATAAACTCTA TGCTTCGAAATCAGGAAACACGGGTTACCTTCAGTTGTCTCGGACTCTTGGCTTAATTGATTCGAATATTCAACCAAACG GGTACCCGTTTAACGGATATTAAACAGGTTTAGTGCTCGAGAAACATTTACAGGTATTCGAGTGTTTGATGTTTCAGACG TTGGGCTTGAGACCCTTTTGTTGAAAAATTTAAGTCCAAAACGAGCCTTAAAATAAAACTTATGGTCATATATTATAATT GGGTGAACAACTTAATTAAATGCTT
CDS sequence (LotjaGi4g1v0083300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACACAAGCTCATACATGTCTCTCTTCATTCTTCTTCTTCCCTCCGAATCGAAACCCTTTCACTTCATCTTCATC CTCTTCTTTTCGTTGGAACCAAATGGCAATTAGGGTTCGGAAAAACCCACACTTTGTGGTGCGCGCTGGTGCTAAGAAGA TATCATTCGGTAAGGAATGCAGAGAGGCTTTGCTAGTAGGCATGGATAAACTCGCTGATGCTGTCTCTCTTACTGTAGGA CCCAAAGGCCGTAATGTTATTCTTTCTGAATCTGGGAAGCTTAAAGTAATTAATGACGGTGTTACAATTGCACGATCCAT AGAGCTTGCCGACGCAATTGAGAATGCAGGTGCCATGCTAATTCAAGAGGTTGCGAGTAAAATGAATGATTTGGCTGGAG ATGGTACTAGCACTGCAATTATTTTGGCTCGAGCCATGATTAAATATGGGCTATTATCTGTTGCATTTGGGGCTAATCCT ATTTCGTTGAGGAAAGGGATGGAAAAGACTGTAAAAGATTTGATCAAGTTCTTGAAGACGAGAAGCGTTCCTGTTGAAGG AAGGGATCACATTAAAGCTGTAGCATCAATATCTGCTGGAAATGATGAGTATGTTGGCAATTTGATTGCTGAAGCTATAG AGAAGATTGGTTCTGATGGGGTGATCTCCATTGAGACATCTTCAACATCTGAAACCTCCGTCATAATTGAAAAAGGGATG AAGATTGATAAGGGTTATATGTCTCCTCACTTCATCACAAACCAGGAGAAGTCCATTGTGGAGTTTGACAATGCTAAAAT TTTGGTAACTGATCAAAAGATTTCAAATGTCAAAGAAATCATTCCCTTGCTGGAAAAGGCTATGCAGTTGAATGCTCCAC TCGTAATTATTGCAGAGGATATCGCAAAACAAGTGTTGGAAACATTAGTAGTGAACAAAGCACAAGGGTTACTAAGAGTT GCAGTTGTAAAATGTCCAGGATTTGGAGATGCAAAGAAAGCTATATTGCAAGATATTGCGCTTATGACAGGTGGTGATTT TCTTGCTGGAGATTTGGGTCTCACTCTTGATGGCGCCACATCAGACCAGCTTGGCAATGCACTGAAAGTAACAATAACCA GTAATGCAACAACTATAATTGCTGATCCTAGCACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAAAAGGATCTT ATGGGAATAGATAATGCGAACCTTTCGAAAAAGCTCTCAGAGAGAATTGCAAAACTCTCGGGTGGTATAGCTGTTATAAA GGTAGGTGCACACACTGAGCTGGAACTTGAAGATAGAAAACTTAGAATCGAGGATGCCAAAAATGCTACATTTGCTGCCA TAAATGAAGGGATTGTTCCTGGAGGGGGGGCTACATATGTCCATCTGTTGGACTTGATACCTACAATAAGGAACTCCATG GAAGATCGAGATGAGCAAATTGGTGCTGATATTGTGGCAAAGGCACTCCTTGAACCTGCAAAATCAATTGCAACTAACGC TGGAGTTGATGGAGATGTTGTTGTCCAGAAGATTAGAATATTTGATTGGAGAATTGGATATAATGCAATGACTGGCACAT ATGAAGATCTTTTGAATGCTGGAGTAGCTGATCCTAGTCGAGTTGCAAGATGTGCTCTTCAAAGTGCGGTATCTGTTGCC GGCGTGGTTCTAACAACTCAAGCTATATTGGTGGAAAAAATAAAGACACCCAAGCCACCTGTGCCCATGCTCCCTGGTAT AAATCTCTAA
Protein sequence (LotjaGi4g1v0083300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTQAHTCLSSFFFFPPNRNPFTSSSSSSFRWNQMAIRVRKNPHFVVRAGAKKISFGKECREALLVGMDKLADAVSLTVG PKGRNVILSESGKLKVINDGVTIARSIELADAIENAGAMLIQEVASKMNDLAGDGTSTAIILARAMIKYGLLSVAFGANP ISLRKGMEKTVKDLIKFLKTRSVPVEGRDHIKAVASISAGNDEYVGNLIAEAIEKIGSDGVISIETSSTSETSVIIEKGM KIDKGYMSPHFITNQEKSIVEFDNAKILVTDQKISNVKEIIPLLEKAMQLNAPLVIIAEDIAKQVLETLVVNKAQGLLRV AVVKCPGFGDAKKAILQDIALMTGGDFLAGDLGLTLDGATSDQLGNALKVTITSNATTIIADPSTKAEIQARILQIKKDL MGIDNANLSKKLSERIAKLSGGIAVIKVGAHTELELEDRKLRIEDAKNATFAAINEGIVPGGGATYVHLLDLIPTIRNSM EDRDEQIGADIVAKALLEPAKSIATNAGVDGDVVVQKIRIFDWRIGYNAMTGTYEDLLNAGVADPSRVARCALQSAVSVA GVVLTTQAILVEKIKTPKPPVPMLPGINL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 586 | 556 | 0.0 | – | |
| PANTHER | 31 | 586 | 556 | 0.0 | – | |
| TIGRFAM | 51 | 573 | 523 | 9.2E-192 | ||
| CDD | 52 | 572 | 521 | 0.0 | ||
| Gene3D | 56 | 569 | 514 | 3.2E-191 | ||
| SUPERFAMILY | 59 | 570 | 512 | 1.58E-61 | ||
| Pfam | 71 | 573 | 503 | 1.4E-91 | ||
| PRINTS | 75 | 101 | 27 | 3.0E-45 | ||
| PRINTS | 130 | 157 | 28 | 3.0E-45 | ||
| SUPERFAMILY | 184 | 246 | 63 | 1.5E-12 | ||
| Gene3D | 184 | 457 | 274 | 3.2E-191 | ||
| SUPERFAMILY | 232 | 423 | 192 | 1.21E-62 | ||
| Gene3D | 239 | 420 | 182 | 3.2E-191 | ||
| PRINTS | 315 | 338 | 24 | 3.0E-45 | ||
| PRINTS | 397 | 422 | 26 | 3.0E-45 | ||
| SUPERFAMILY | 411 | 456 | 46 | 1.31E-11 | ||
| PRINTS | 445 | 466 | 22 | 3.0E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi4g1v0083300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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