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LotjaGi4g1v0083300.2

Overview

Field Value
Gene ID LotjaGi4g1v0083300
Transcript ID LotjaGi4g1v0083300.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 60 kDa chaperonin; TAIR: AT5G18820.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q56XV8|CPNA2_ARATH Chaperonin 60 subunit alpha 2, chloroplastic; TrEMBL-Plants: tr|G7JJX9|G7JJX9_MEDTR TCP-1/cpn60 chaperonin family protein; Found in the gene: LotjaGi4g1v0083300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:10906727..10913311) extracted from Lotus japonicus Gifu genome v1.2.

AAAGAACCGGCGATAGGGTTGTTGTGGAGGCGAGAACCGGCGGTGGGCGTGGCGGTGTGTGCGAAAGTCGATCAACAAAA ACAAGAGGAAAATGAAAGGAACGGAAACAAAAACACGAGAGGAAGAGGAAAAAGAAACCCAAGACTCCAAGAGGGAAGAG GAACAAGATCTGAAATGAAATTGAAACAGGGATGGGTGGTTTAGAGGGAAAATTTGAAATGAAATTGGAGTGGTGGTAGT TTTAGAAATTTACTTTTCAAAATAGCATTTTTATCTTTTCACGCCTTAGGAAGGTAAAATTAGATGTGGGGTGATCGGAA TAACAACTACCCGCATCAATAGATGTGGGGTATAAGTATACCAACTCTCTTTTGGTTAATGGGGTGGGAAGAAAATTTGT CTTGGTGAGGCAGTATTTTTGAGTAGCTGCACCTTTGCCAGGGTGAGTAGTACCGAGTTTCGAAACGAGACGAATATGCA AACACAAGCTCATACATGTCTCTCTTCATTCTTCTTCTTCCCTCCGAATCGAAACCCTTTCACTTCATCTTCATCCTCTG TAAGTCTCTTTGCTCGCTCTGCAACACTCTCACCCTCACTTTGGTCCATGCCATATACATATATATGCTTCTTTTCTTTT CGTTTTTTCTGACTTTACGCTGTTGCAGTCTTTTCGTTGGAACCAAATGGCAATTAGGGTTCGGAAAAACCCACACTTTG TGGTGCGCGCTGGTGCTAAGAAGATATCATTCGGTAAGGAATGCAGAGAGGCTTTGCTAGTAGGCATGGATAAACTCGCT GATGCTGTCTCTCTTACTGTAGGACCCAAAGGTTTCAAATTTCAAAATTCTCCTCTTTTTTTTATGTCTTATATGCTACT AATGACTTAGGTTAGCAATTAAATTAAAGTGTGGTCATTTTTATTTTATTTAATTTGTTGCATTGCTTAATCACTAGAAT ATTTTTTTATCACTGTTATATGCATTTCTCCATTGTATTAATTTAAGTGCATGTTTGGTTTGAATTAGATTTTAGTGTCT TTACGGTTTTGATTATAAGTTGTTTTAGCTATAAATAAGCTAATCCAAACAATAACCAAGTGTGTGTTTGTTTTGATGGA CTTTCGCTTCATTCGGTTCCATAAACCATGGTTTTAAATTGCAGTCGTGGTTGTGGTTATATTCCAGAAGAGAAATTCTA GCAACTCTCTCTTTGGCACTCTCTTTCTAACACTCTGTCCTTGCCTGGTTAAAATCCATGTAGTGTCCACTAAATTATAT GGGCTCCACTACCAATTTGGTGGGAATTGTATGAATTTTAACCAATCGAAGTAAGAGTGTTAGAATTGCAGACAAATGCA GGTTGATGCAACCACAATTGCGGCCATGATGCACTCAAAATCCCTTTACATTGCGGACACAATTACAGTTGCGGGCTGCA ATTTAAAACCCTGCTTAGGGGGTGTATTGAGATGAATGTGCTTTTACATTTTGGGTAACATCTAGTGAAACACACCCTAA GATTCACTATTGCTTTTAATTATGTTCAAGCTGCAGATTGCTTGCACTTGAAGCTCTATATTATGTGGTACTTTGACTGA TTATGGTTCAATGTTTTTTTTACCGTTCATGCTTATTTGTTTCACTCCTAACCACACAGGCCGTAATGTTATTCTTTCTG AATCTGGGAAGCTTAAAGTAATTAATGACGGTGTTACAATTGCACGATCCATAGAGCTTGCCGACGCAATTGAGAATGCA GGTGCCATGCTAATTCAAGAGGTTGATCATAGTTGTTAGGTTTTGCCACGGGTTAAAAGGTTGAAACTTGAGACAAAAGT TACCACAGATGTATTTAGGTTTCTATGTTTCCTGCTTGTAGGTTGCGAGTAAAATGAATGATTTGGCTGGAGATGGTACT AGCACTGCAATTATTTTGGCTCGAGCCATGATTAAATATGGGCTATTATCTGTTGCATTTGGGGCTAATCCTATTTCGTT GAGGAAAGGGATGGAAAAGACTGTAAAAGATTTGATCAAGTTCTTGAAGACGAGAAGCGTTCCTGTTGAAGGAAGGGATC ACATTAAAGGTCTTTTCTTCTGCCTGTTTTTGTTTTGTTAAGGTAATATTTTTTTCACATAGGAAGTATTTGAAGCTATT TATTTCCCTGCTTTTGCAGCTGTAGCATCAATATCTGCTGGAAATGATGAGTATGTTGGCAATTTGATTGCTGAAGCTAT AGAGAAGATTGGTTCTGATGGGGTGATCTCCATTGAGACATCTTCAACATCTGAAACCTCCGTCATAATTGAAAAAGGGA TGAAGGTATTGATGATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAA TATTTCTCAATGACAGGCGTCAATTCTTCTTTGTCAGATCTGAATGATTGTTGCCCTTGTATTTTTCACTATTATAGCTA TTTGTTCTTTCTGTACAGATTGATAAGGGTTATATGTCTCCTCACTTCATCACAAACCAGGAGAAGTCCATTGTGGAGTT TGACAATGCTAAAATTTTGGTAACTGATCAAAAGATTTCAAATGTCAAAGAAATCATTCCCTTGCTGGAAAAGGCTATGC AGTTGAATGCTCCACTCGTAATTATTGCAGAGGATATCGCAAAACAAGTGTTGGAAACATTAGTAGTGAACAAAGCACAA GGGTTACTAAGAGTTGCAGTTGTAAAATGTCCAGGATTTGGAGATGCAAAGAAAGCTATATTGCAAGATATTGCGCTTAT GACAGGTGAGTTCCTATGGCACTATGCTTTTCTATTTTCAAATTATTGTCATGAAGCCTACACACAAATAGTTGCTTCTT TTGCTACTATTGACTGACCAAGTATACTGACAAGAAGCTTTTCTATGACATTGCTTTTCGTTTTCATTTATCAATTTTAG TTTGGCAGAGAGCCTGCCTTGGGTACTAAGGCAATAATACCACTTTCTTATTTAATAATTTTCTTATTTTAGTTGCTAAG ATCTGCATGTTTCACCTCATGTTGACATTAACATCACAGGTGGTGATTTTCTTGCTGGAGATTTGGGTCTCACTCTTGAT GGCGCCACATCAGACCAGCTTGGCAATGCACTGAAAGTAACAATAACCAGTAATGCAACAACTATAATTGCTGATCCTAG CACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAAAAGGATCTTATGGGAATAGATAATGCGAACCTTTCGAAAA AGCTCTCAGAGAGAATTGCAAAACTCTCGGGTGGTATAGCTGTTATAAAGGTACCTAATTCAATGCAAGTGTCATGGGTT GTCTGTACTCTGATCATCACTCTTTACTTTGCTACTATTTCTTACTCTTTTCTGATTTTATAAATTCTTGAGTTTTATTG AATCATACATTATTCCTATGCATTTCAACCTGCATGTAACTTGAGAAATGGATATTAGATTATTAATCTTAAACATGGTC ATCTTGGAAGTTTTAGTACCTACTAGCCCTTTATGATGTATTCCTTATATAAGTAAAATCCTGTGAAGTTTTTTCACTTC TATGTCATACTATCACTGATGTTTTATTTATCTTTAATATTATTTCATCTGTGTGATATTTATCTTCTCCTTTATATATT TTCTTCTACTTTATATTTTTTTCTAAATCAAATCAAATATTACAATAGCATTTATATTTTCTATTTCTCCAAGAACTCTA GATGTCCCACTGCCTGTCGTAATGACTCAAGTCATTCTATTTTTATCTTATTGTTTCTCTGAATTCTATGAAATTGATTC TAGATATTGCACCATGTGTACGATAGTCATAATACTTTTGTATGAAGATTTTAGAAAATAAAAAATATGAATAAAAATTG AAATTTGAAACTATGTCCTAAACCATGAAGCAAGATTTATATTTAAATGATTTATCATTCTGTATGATTTACGATTGTGA TATGACTTTAAGACGTGTCATTTGAACCATATAGCCGATCCCACCTAATAGAAAAAAGCTTTTGTTGCTGTTACTGTTGT AGTCAAAATAGAAGTTGCATTTATTTCTTTTTAGAAGGGCTTTACTCACCATTAGTTTGGGTCCTATAAAAGATGTGTTG ATTGAATGCAGTATCCCTTGATCCTTGTTTAGGATATGCATGAACCAAGAAACCCATTGTGTTAATTGCATGGATCATAC TAACTTTCATTTGTTTTCGATATTCATGATGTCTTGATTGCAATTTGTTATACAGAAACAAATAGCTGTGATCTTGAATT TTGCTCAGAATATGTAACATTAGCATTATATTCTAGTGTTAACTGCTTAATGCAATAAACCATTATGTAGGTAGGTGCAC ACACTGAGCTGGAACTTGAAGATAGAAAACTTAGAATCGAGGATGCCAAAAATGCTACATTTGCTGCCATAAATGAAGGG ATTGTTCCTGGAGGGGGGGCTACATATGTCCATCTGTTGGACTTGATACCTACAATAAGGAACTCCATGGAAGATCGAGA TGAGCAAATTGGTGCTGATATTGTGGCAAAGGTAAAATTATATATGTTAATCTACAGTATCAAAGCTTGAAGAAAATAAT TGAGGGAGCCAAAAAAATATTTTCCTCAGAATGACTCATCACGAAAAAATCACTATGGTTTGTCTTAAATCAAAGAGGCT GATGATCTGAAATTGCAATTTCTTATATATTGCATCTGAATCTGATAGTGATTGTAGAGGGATAACCCAAGCCCCATCGG CCTTGAATGTTATTCAGTTATTGGCACTTTATCCCTTGTCAACTCACAATCAAATATTTATGTTGTGTTCAATAATATCA ATTTCATAAATTTGTCATGGCCTACGCAAAGATTGTCTTTTGTGATTGTGTTGGCATGGGATTTAATGTCAATGACTGCC ATCTCAACTTCACGTGACAACTATAACAAATGTACTTTCAGAATTAGGAAAGTAGATTATTGTAAATAGTATCCCTGATT GTTATAGTAGGTTTCAGAATTAGGGAAGTAGAAAGTCTCTTGTGATCTCCTATTTATGGATCCCTGCCATTTAGGAACAC TGAAATATAAACTCAATTAGGCTGAGGAACTCTCTCAAGCAATTCTAAATGCTGTAGAATAGTGGAATCTCAAGTTGATC GTCATCAATGTCAAAAATATCTAGTTATCACTTGATTCACTTTGTGGATTGTCCAAACTTGGACATTGGAGAAACTCCAC TATCTACAGTCGTGTGAAGTTTGCATTAAGAGTTTGAGGGGTGTGTCAAGTCTCCTGTGCAAGTGTGCATTATTCTAGTG GGTTTAGGATTCACCATGTAGCATCATCCACTCCCCAAGATAATGGAATATAATTTTTTTAGCTGAGATATTAGTTCTTA TTTTTAGTTTCTGGTAAAAATGATTTTTTTCTTACTATTTCCCTCACATATAGCTGGATTGAGACTAGTTCTGTGAAAGG TAATATTACTTATGAACTTGTCTTGTATGCTTTTACATATTTGTGAGAGGTTGCACTTGAATAATGGCAGGCACTCCTTG AACCTGCAAAATCAATTGCAACTAACGCTGGAGTTGATGGAGATGTTGTTGTCCAGAAGATTAGAATATTTGATTGGAGA ATTGGATATAATGCAATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCTGATCCTAGTCGAGTTGCAAGATG TGCTCTTCAAAGTGCGGTATCTGTTGCCGGCGTGGTTCTAACAACTCAAGCTATATTGGTGGAAAAAATAAAGACACCCA AGCCACCTGTGCCCATGCTCCCTGGTATAAATCTCTAAAATAGGGAGAGCAATTACAATTTTGAACACGGAGTTGAAGTC TTCTCTGATGTGTACGCCGTTGGTCGAGTCAAATATTGTGAATGTCCCTCGGGTTGATTAATACTCGTGCTGCAATTAGA ATGTTCCTTCAAGGATGGAAAAATGAGGGTTACTGCTTCTTACTCTTGGGTTATGATTTGATGAAACCCACGTATCATGA AGCAAAAGGAACAATTAGCAACAGCCAACAGGTGAAGTTCAATTTTGATTGAAGGAAGTTGTGTAGTGTTAGGTTTCTTT CCCCATTTTATTGATTCATTTTACAGTGACACTTAGCTGACAATAGTTTTGTTCCGTAAGAGCTTTAATATGATATTGTC AAGGGAATGTTTATAAACTCTGATTTAGCCGTATCATGGAATCTGCTTGAACAGGTACTTTCCTCTCCTGATAAACTCTA TGCTTCGAAATCAGGAAACACGGGTTACCTTCAGTTGTCTCGGACTCTTGGCTTAATTGATTCGAATATTCAACCAAACG GGTACCCGTTTAACGGATATTAAACAGGTTTAGTGCTCGAGAAACATTTACAGGTATTCGAGTGTTTGATGTTTCAGACG TTGGGCTTGAGACCCTTTTGTTGAAAAATTTAAGTCCAAAACGAGCCTTAAAATAAAACTTATGGTCATATATTATAATT GGGTGAACAACTTAATTAAATGCTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0083300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGTTGCGAGTAAAATGAATGATTTGGCTGGAGATGGTACTAGCACTGCAATTATTTTGGCTCGAGCCATGATTAA ATATGGGCTATTATCTGTTGCATTTGGGGCTAATCCTATTTCGTTGAGGAAAGGGATGGAAAAGACTGTAAAAGATTTGA TCAAGTTCTTGAAGACGAGAAGCGTTCCTGTTGAAGGAAGGGATCACATTAAAGCTGTAGCATCAATATCTGCTGGAAAT GATGAGTATGTTGGCAATTTGATTGCTGAAGCTATAGAGAAGATTGGTTCTGATGGGGTGATCTCCATTGAGACATCTTC AACATCTGAAACCTCCGTCATAATTGAAAAAGGGATGAAGATTGATAAGGGTTATATGTCTCCTCACTTCATCACAAACC AGGAGAAGTCCATTGTGGAGTTTGACAATGCTAAAATTTTGGTAACTGATCAAAAGATTTCAAATGTCAAAGAAATCATT CCCTTGCTGGAAAAGGCTATGCAGTTGAATGCTCCACTCGTAATTATTGCAGAGGATATCGCAAAACAAGTGTTGGAAAC ATTAGTAGTGAACAAAGCACAAGGGTTACTAAGAGTTGCAGTTGTAAAATGTCCAGGATTTGGAGATGCAAAGAAAGCTA TATTGCAAGATATTGCGCTTATGACAGGTGGTGATTTTCTTGCTGGAGATTTGGGTCTCACTCTTGATGGCGCCACATCA GACCAGCTTGGCAATGCACTGAAAGTAACAATAACCAGTAATGCAACAACTATAATTGCTGATCCTAGCACTAAGGCTGA AATTCAGGCTAGAATTTTACAGATAAAAAAGGATCTTATGGGAATAGATAATGCGAACCTTTCGAAAAAGCTCTCAGAGA GAATTGCAAAACTCTCGGGTGGTATAGCTGTTATAAAGGTAGGTGCACACACTGAGCTGGAACTTGAAGATAGAAAACTT AGAATCGAGGATGCCAAAAATGCTACATTTGCTGCCATAAATGAAGGGATTGTTCCTGGAGGGGGGGCTACATATGTCCA TCTGTTGGACTTGATACCTACAATAAGGAACTCCATGGAAGATCGAGATGAGCAAATTGGTGCTGATATTGTGGCAAAGG CACTCCTTGAACCTGCAAAATCAATTGCAACTAACGCTGGAGTTGATGGAGATGTTGTTGTCCAGAAGATTAGAATATTT GATTGGAGAATTGGATATAATGCAATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCTGATCCTAGTCGAGT TGCAAGATGTGCTCTTCAAAGTGCGGTATCTGTTGCCGGCGTGGTTCTAACAACTCAAGCTATATTGGTGGAAAAAATAA AGACACCCAAGCCACCTGTGCCCATGCTCCCTGGTATAAATCTCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0083300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQVASKMNDLAGDGTSTAIILARAMIKYGLLSVAFGANPISLRKGMEKTVKDLIKFLKTRSVPVEGRDHIKAVASISAGN DEYVGNLIAEAIEKIGSDGVISIETSSTSETSVIIEKGMKIDKGYMSPHFITNQEKSIVEFDNAKILVTDQKISNVKEII PLLEKAMQLNAPLVIIAEDIAKQVLETLVVNKAQGLLRVAVVKCPGFGDAKKAILQDIALMTGGDFLAGDLGLTLDGATS DQLGNALKVTITSNATTIIADPSTKAEIQARILQIKKDLMGIDNANLSKKLSERIAKLSGGIAVIKVGAHTELELEDRKL RIEDAKNATFAAINEGIVPGGGATYVHLLDLIPTIRNSMEDRDEQIGADIVAKALLEPAKSIATNAGVDGDVVVQKIRIF DWRIGYNAMTGTYEDLLNAGVADPSRVARCALQSAVSVAGVVLTTQAILVEKIKTPKPPVPMLPGINL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45633
2 465 464 2.1E-261 –
Gene3D
G3DSA:1.10.560.10
2 445 444 2.2E-162
IPR027413
Pfam
PF00118
2 452 451 7.2E-78
IPR002423
SUPERFAMILY
SSF48592
2 449 448 3.58E-43
IPR027413
PANTHER
PTHR45633:SF13
2 465 464 2.1E-261 –
CDD
cd03344
2 451 450 0.0
IPR001844
PRINTS
PR00298
9 36 28 3.7E-38
IPR001844
SUPERFAMILY
SSF54849
63 125 63 1.07E-12
IPR027410
Gene3D
G3DSA:3.30.260.10
63 336 274 2.2E-162
IPR027410
SUPERFAMILY
SSF52029
111 302 192 7.53E-63
IPR027409
Gene3D
G3DSA:3.50.7.10
117 301 185 2.2E-162
IPR027409
PRINTS
PR00298
194 217 24 3.7E-38
IPR001844
PRINTS
PR00298
276 301 26 3.7E-38
IPR001844
SUPERFAMILY
SSF54849
289 335 47 9.16E-12
IPR027410
PRINTS
PR00298
324 345 22 3.7E-38
IPR001844

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0042026
Biological process Protein refolding The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0083300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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