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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0083400 |
| Transcript ID | LotjaGi4g1v0083400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G15690.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690; TrEMBL-Plants: tr|V7CGN0|V7CGN0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0083400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10939720..10943356) extracted from Lotus japonicus Gifu genome v1.2.
CGCCGTTTACAGAATCATCATAAATTAAACGGAACCTCACGGTAGGGGCTTATCACCATATATTATTTTCACATTAGGGG CTTATTCCACCCAAAAAAATTTGTAGGGGCCTTAACCAAAGCACCCCTATTTTAGAGGGACTTCCAACATATTTAAGCCT ATAAAATACATATAAAAATTGGGTCTCCCATTTCATTATTTAATCGTCTTTTAAATTAGAGAAAACAAAAACCCTAGTCC TTCTGAACCCTTCTTCTTCCTCAAACCTCTCCAGTTCCACCACCATCTTCCTCTTCCTCTCCCACCACAACAACCGCGTT CCAATGTCGATTCTGCATCCTCGAAGAATCACCATGCTCCCTTTCTGGCTCAAGTCCAGACCTACTTCCATCTTCTCCAC CCAATCCCTCAGTACCACCTCCAATGGCTATGCCAGATTCCCTTCCAATCCCAATCAATGGAATCAACCACCACCACCAC ACACTCCTCCTCAAAACCCCAATTTCCAGCAACCCCATCAATGGAATCAACAACCACACACTCCTCAAAACCCCAATTTT CAGCAACCCCATCAATGGAATCAACAACCACACACTCCTCAAAACCCCAATTTTCAGCAACCCCATCAATGGAATCAACA GCATCCACAACCACACACTCCTCAAAACCCTAACTTCCAGCAACCCCATCAATGGAATCAGCAACATCCACCACCACACA CTCCTCAAAACCCCAATTTCCGGCCACCCAATCAATGGAATCAACAACCACACACTCCTCAAAACCCCAATTTTCAGCCA CCCAATAGCCACTGGAACCCTAGGACTCCAGCCCCACAAAACCAATTTCAGAACGTGCAAGCTCCGGTTCGAGTGCAAGC TCCACCACCTTCTATCATTGATTTGTGCAGGGAGGGGAAGCTGAAAGAGGCGATTGAATTGCTGGACAATGAGGTCAAGG CTGATGCTGCTTGCTTTGATCATCTCTTTGACTTGTGTGCTCAAACGAAATCGCTCGAGGATGCGAAGAAGGTCCATGAC TACTTCTTACAATCTACCTGCAGGGGAGATTTCAATTTGATCAATAAGGTCATTCATATGTACGCGAATTGTAAGAGTAT GATTGATGCACGCAGGGTGTTTGATCATATGTCTAGCAAGAATGTGGAGTCTTGGCACTTGATGCTTCGCGGCTATGCGA ATAGTACTATGGGAGATGATGCCTTGCAGCTGTTTGAGCAGATGAATGAGCTGGGTTTAGAGATCACGTCTGAGACTTTG CTTGCAGTGTTATCGGCTTGTGGTAGTGCTGAGGCTGTGGAGGATGCTTTCCTTCATTTTGACTCCATGAAAAGCAAGTA TGGGATTGAACCAGGGGTGGAGCACTACATGGGGCTTTTGGATGTTCTTGGACAATCTGGATATCTCAAGGAAGCTGAGG AGTTCATTGAGAAGTTGCCATTTGAGCCCACTGTGACTGTGTGGGAGACACTGAAGAACTATGCTCGCATTCATGGAGAT ATTGATCTTGAAGACCATGTGGAAGAGTTGATGGTTAATCTTGACCCATCAAAGGCTGTTGCCAATAAGATCCCTACCCC GCCTCCGAAAAAGTACAATCATATTAGCATGCTTGATGGCAGGAACAGAATCATTGAGTATAAGAATCCTAGTCTCTACA AGGATGATGAAAAGTTGAAGGCTTTGATTGGGATGAAGGATGCAGGGTATGTTCCTGATACGAGATATGTTCTTCATGAC ATTGATCAGGAAGCAAAGGAGCAGGCTTTGCTCTACCACAGTGAACGTCTAGCTATTGCCTATGGCCTCATTAGTACTCC ACCAAGAACACCTCTTAGAATCATTAAGAACCTTCGTGTCTGTGGTGACTGTCACAATGCCATTAAGATCATGTCCAGGA TTGTAGGGAGGGAATTGATTGTCAGAGATAACAAGAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTAC TGGTGAAGGATTCATTTCTTGAATTCTTACAATATCTTGAATGTAGTTTTTTATTGTAGACCGGGAAGCCATTTGTGCTT GGAAGGTTCAATACTGCTTATGCAGTATGCACTGATTTATAATGTAGTTGCTTTTTGTTAGATATTCACTTCATTCTCTC TCTACTTCTGTTCAGTGCTACAACTTGATAAAGTTAAATTTTGCTCTCGTGTGATTTGTTCTGCTACTTTATGCATGTAT GAAAATGTATATATTTATTTCATTGTGATGTGATTTAACCTTATTTTGTTTGTTTGATATTATTTGATTCAGTTTTGTTT TCTTTTGAATTAAGATGAACATTGTACATAATTGTCTCTGTAATTTTAATTCATGAATAAAAGAATTACGCCAAGAACAG TGATAAATTGTGTTAATTCATGGTGGAGTTACTGAAATGATAAATGTGCTATTGATTTTTTTTATCCCTGATAAAGGCCA GAAATTTGAGGCATATGTTTGAAAATCATTGCTGTGATGTTATTCATCTGTGGGTTTTTAGCCAGTTCCTATTCCTATAG TTTTGTTGAGTTCATTTGCTCAATGTAGTTCCAAATATGCAGAGGTTTAACTGATTTTGTGTATTTTGGTTTGTTCGATT AATTTTTTATGTGTTCAGTCCTGTATCTTTGTTTATTCATTTTATTTTCACATCTTTTTTTTTTTAATGTTCAGCCATTT AAGAATGTATTTGAATAAATTGTGGGAGTGAATCTAGAAAGCTCAAAGCCAAGGGTAAGATGAGATGCTGAGTGAAGTGA ACCTTCTGCATGAATTGGCCCACTTTGATTTGACATTATTGTGGGTCTGCTTTAATTGCAAACTCTCTAATGCACTGTCT TTGATTCTGACATGTATCCAAGTTTTGCTTCACCATGTGCTAGTGCTTGCTGCTTCCACCAAATTCAATTTTAGGTGAAA GCTGAGAGATCTTCAGAATTGATCTGGTTTTCCTTCAGAAGAAAATGGTACTTTAGCTGATTTTCCTGCTAATTAAGCTA CATATAGTGGTCAGTACTCAACAGCTTCATGAATATGAAGATATTAGCATAATTCAGGTCTATGTGATGACTGGACCTGG TCCACTCATTTTCTTGTTGGGTTCCTGGATTTTAATTTTATTTGCTGCAGGTGTTCACACTGTCTATGAGGTCTCTCAAA GAAGGCTTTTCTTCCCCGCACAAGAATTCCTCGTCATGGTGCCTTTCATGGATCTGGAAGTAGTCTTTGAGCCTCAAGTT CAACATGAGGAAGAACCACAAGAAGTAGCAGCAAACAATACACTTGCTATTGCAGAACCTTGGATTCCTACTTTAGAAGC ACAACATGACAACATCGATATGTTACCAATGATTTGCTGGGATTGAGCAGATGCTAAAGATTCTCTTGGAGCGCACAGCA CCCTGACTTCTTCATTCCCTATAATGCTTTATTTCCTTTAATTTTTCTGGCACTGCTTTCTCTTTTTTTTTTAACATCGC ACTGCTTTTTCTTGACCCTTTGACAATTTGGCTTTTTCCCTGGATCATTTATATCTGCTCATTGTTATTTCATTTATGCT CTGGTACCACCTTAATGTTATATTAGTATTACCACTT
CDS sequence (LotjaGi4g1v0083400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATTCTGCATCCTCGAAGAATCACCATGCTCCCTTTCTGGCTCAAGTCCAGACCTACTTCCATCTTCTCCACCCA ATCCCTCAGTACCACCTCCAATGGCTATGCCAGATTCCCTTCCAATCCCAATCAATGGAATCAACCACCACCACCACACA CTCCTCCTCAAAACCCCAATTTCCAGCAACCCCATCAATGGAATCAACAACCACACACTCCTCAAAACCCCAATTTTCAG CAACCCCATCAATGGAATCAACAACCACACACTCCTCAAAACCCCAATTTTCAGCAACCCCATCAATGGAATCAACAGCA TCCACAACCACACACTCCTCAAAACCCTAACTTCCAGCAACCCCATCAATGGAATCAGCAACATCCACCACCACACACTC CTCAAAACCCCAATTTCCGGCCACCCAATCAATGGAATCAACAACCACACACTCCTCAAAACCCCAATTTTCAGCCACCC AATAGCCACTGGAACCCTAGGACTCCAGCCCCACAAAACCAATTTCAGAACGTGCAAGCTCCGGTTCGAGTGCAAGCTCC ACCACCTTCTATCATTGATTTGTGCAGGGAGGGGAAGCTGAAAGAGGCGATTGAATTGCTGGACAATGAGGTCAAGGCTG ATGCTGCTTGCTTTGATCATCTCTTTGACTTGTGTGCTCAAACGAAATCGCTCGAGGATGCGAAGAAGGTCCATGACTAC TTCTTACAATCTACCTGCAGGGGAGATTTCAATTTGATCAATAAGGTCATTCATATGTACGCGAATTGTAAGAGTATGAT TGATGCACGCAGGGTGTTTGATCATATGTCTAGCAAGAATGTGGAGTCTTGGCACTTGATGCTTCGCGGCTATGCGAATA GTACTATGGGAGATGATGCCTTGCAGCTGTTTGAGCAGATGAATGAGCTGGGTTTAGAGATCACGTCTGAGACTTTGCTT GCAGTGTTATCGGCTTGTGGTAGTGCTGAGGCTGTGGAGGATGCTTTCCTTCATTTTGACTCCATGAAAAGCAAGTATGG GATTGAACCAGGGGTGGAGCACTACATGGGGCTTTTGGATGTTCTTGGACAATCTGGATATCTCAAGGAAGCTGAGGAGT TCATTGAGAAGTTGCCATTTGAGCCCACTGTGACTGTGTGGGAGACACTGAAGAACTATGCTCGCATTCATGGAGATATT GATCTTGAAGACCATGTGGAAGAGTTGATGGTTAATCTTGACCCATCAAAGGCTGTTGCCAATAAGATCCCTACCCCGCC TCCGAAAAAGTACAATCATATTAGCATGCTTGATGGCAGGAACAGAATCATTGAGTATAAGAATCCTAGTCTCTACAAGG ATGATGAAAAGTTGAAGGCTTTGATTGGGATGAAGGATGCAGGGTATGTTCCTGATACGAGATATGTTCTTCATGACATT GATCAGGAAGCAAAGGAGCAGGCTTTGCTCTACCACAGTGAACGTCTAGCTATTGCCTATGGCCTCATTAGTACTCCACC AAGAACACCTCTTAGAATCATTAAGAACCTTCGTGTCTGTGGTGACTGTCACAATGCCATTAAGATCATGTCCAGGATTG TAGGGAGGGAATTGATTGTCAGAGATAACAAGAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTACTGG TGA
Protein sequence (LotjaGi4g1v0083400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSILHPRRITMLPFWLKSRPTSIFSTQSLSTTSNGYARFPSNPNQWNQPPPPHTPPQNPNFQQPHQWNQQPHTPQNPNFQ QPHQWNQQPHTPQNPNFQQPHQWNQQHPQPHTPQNPNFQQPHQWNQQHPPPHTPQNPNFRPPNQWNQQPHTPQNPNFQPP NSHWNPRTPAPQNQFQNVQAPVRVQAPPPSIIDLCREGKLKEAIELLDNEVKADAACFDHLFDLCAQTKSLEDAKKVHDY FLQSTCRGDFNLINKVIHMYANCKSMIDARRVFDHMSSKNVESWHLMLRGYANSTMGDDALQLFEQMNELGLEITSETLL AVLSACGSAEAVEDAFLHFDSMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEEFIEKLPFEPTVTVWETLKNYARIHGDI DLEDHVEELMVNLDPSKAVANKIPTPPPKKYNHISMLDGRNRIIEYKNPSLYKDDEKLKALIGMKDAGYVPDTRYVLHDI DQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 173 | 148 | - | – | |
| MobiDBLite | 26 | 43 | 18 | - | – | |
| MobiDBLite | 44 | 59 | 16 | - | – | |
| MobiDBLite | 60 | 126 | 67 | - | – | |
| MobiDBLite | 139 | 173 | 35 | - | – | |
| Gene3D | 190 | 345 | 156 | 1.1E-26 | ||
| PANTHER | 191 | 410 | 220 | 5.6E-34 | – | |
| ProSiteProfiles | 214 | 248 | 35 | 6.533 | ||
| ProSiteProfiles | 249 | 279 | 31 | 7.026 | ||
| Pfam | 255 | 281 | 27 | 0.95 | ||
| ProSiteProfiles | 280 | 314 | 35 | 10.611 | ||
| Pfam | 283 | 312 | 30 | 7.3E-4 | ||
| TIGRFAM | 283 | 315 | 33 | 4.3E-4 | ||
| ProSiteProfiles | 315 | 345 | 31 | 6.116 | ||
| ProSiteProfiles | 351 | 381 | 31 | 5.853 | ||
| Pfam | 355 | 377 | 23 | 1.1 | ||
| Pfam | 457 | 550 | 94 | 1.7E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0083400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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