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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085300 |
| Transcript ID | LotjaGi4g1v0085300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease-binding protein) family protein; TAIR: AT5G45100.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|A0A0S3R2J4|A0A0S3R2J4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0085300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11253155..11254506) extracted from Lotus japonicus Gifu genome v1.2.
CCCTACTAGTCGCCACCCCATTTGCATGTGAATTGTGAATTGTGAAATTCTCCCTCCCATTTTCATTCCCTTCATTTTCC TCCTCACCAGTCACCCCCTTTGCATTTTCAAGAAGAAACAGAGTAACCATACATAACCAACTCTCATCATGGCAGTTGAA ACTCCTCACATGAATACTCTCCTTCAGTTACTCACAAACAGGTAATTATTTTCCTTCCATTTTCTGTTTCTGTTTTCTCT CCATTTTCCATCTCATTATATCAATTGCTTTTGTTCATTTTCCACAGAGAAATGTTCAATCTCAACAACAACAATCACTT TTTCTACAACCCCCAAATGGCCATGGATGGTTCCTCAGTTCCTCTCTCTTCTTCACCCTTCTGGGATCCAACCTCCATCA ACAAAGCTGTTACCGGAAGGAAGCGACCCAGAGACAACAACAACAACAACAACTCCATCGCTGAATCACCATTTCTTGAC CAAAACCTTCAGTATCAAATCCACACCCACCAATCCGAGATCGATCGATTCATCGCTCAACATGTAATTTTCTCCAATTT TTTTCACCATAACCGTGTAACTGAATTCAAGAGTTTTGAAATTTCAAATTGAATTGTTTGTTTGATTGTTAGATTTTTTT GTTACTGATTTTCTTTCTTCTGTTATTGTTGTAACAGACGGAGAAAATGCTGAAGGAGTTAGAAGAGCAACAACTGCGTC AATCAAGAGCGTTACTCTCGGCGGTTCAAGAAGCAATGTTGAAGAAGATGAAGGAGAAAGACGACGAGATTCAGAAACTC GCTAAGGTGAATTTCGTCCTGCATGAAAGAGTGAACAGCCTCTGCGAGGAGAATCAGATTTGGAGGGAGCTAGCACAGGC GCATGAAGCCGCCGTGATTTCCCTGCGTTCCGACTTGGAACAGGTGCTGGCGCACGTTAGTGATAGCCACCGCGGCGCGG CGGCGGAGGAGGAAGATGATGCTGAGTCGAGTTGCGGCAGCAACCACCACCGTGAGGAGGAGGAGGAGGAAAACGAGGCG GTGGGGAATTTGTGCAGGGAGTGTGGGGCCCAGGAATCGGGAGTACTGTTACTGCCATGTAGGCATTTGTGTCTGTGTAC GACGTGTGGGTCCACCGTTCGTAATTGCCCTCTTTGTCATTCTGCCATCAATGCTAGCGTACATGTCAATTTCTCTTAGA AATTTAGAAATTTACATTTTCCATATTGGATTTTACACCATCCAATAACTAGACTTGTTACTAGTAGTTGTTAGCAAAAG AAAACAAATTGACTTTACAATTCTTTTGTTATTAATATAGATATATTTTTTTTTTTTGGTGCTTCGGAAAAA
CDS sequence (LotjaGi4g1v0085300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAATCTCAACAACAACAATCACTTTTTCTACAACCCCCAAATGGCCATGGATGGTTCCTCAGTTCCTCTCTCTTC TTCACCCTTCTGGGATCCAACCTCCATCAACAAAGCTGTTACCGGAAGGAAGCGACCCAGAGACAACAACAACAACAACA ACTCCATCGCTGAATCACCATTTCTTGACCAAAACCTTCAGTATCAAATCCACACCCACCAATCCGAGATCGATCGATTC ATCGCTCAACATACGGAGAAAATGCTGAAGGAGTTAGAAGAGCAACAACTGCGTCAATCAAGAGCGTTACTCTCGGCGGT TCAAGAAGCAATGTTGAAGAAGATGAAGGAGAAAGACGACGAGATTCAGAAACTCGCTAAGGTGAATTTCGTCCTGCATG AAAGAGTGAACAGCCTCTGCGAGGAGAATCAGATTTGGAGGGAGCTAGCACAGGCGCATGAAGCCGCCGTGATTTCCCTG CGTTCCGACTTGGAACAGGTGCTGGCGCACGTTAGTGATAGCCACCGCGGCGCGGCGGCGGAGGAGGAAGATGATGCTGA GTCGAGTTGCGGCAGCAACCACCACCGTGAGGAGGAGGAGGAGGAAAACGAGGCGGTGGGGAATTTGTGCAGGGAGTGTG GGGCCCAGGAATCGGGAGTACTGTTACTGCCATGTAGGCATTTGTGTCTGTGTACGACGTGTGGGTCCACCGTTCGTAAT TGCCCTCTTTGTCATTCTGCCATCAATGCTAGCGTACATGTCAATTTCTCTTAG
Protein sequence (LotjaGi4g1v0085300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNLNNNNHFFYNPQMAMDGSSVPLSSSPFWDPTSINKAVTGRKRPRDNNNNNNSIAESPFLDQNLQYQIHTHQSEIDRF IAQHTEKMLKELEEQQLRQSRALLSAVQEAMLKKMKEKDDEIQKLAKVNFVLHERVNSLCEENQIWRELAQAHEAAVISL RSDLEQVLAHVSDSHRGAAAEEEDDAESSCGSNHHREEEEEENEAVGNLCRECGAQESGVLLLPCRHLCLCTTCGSTVRN CPLCHSAINASVHVNFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 17 | 257 | 241 | 4.7E-67 | – | |
| MobiDBLite | 36 | 58 | 23 | - | – | |
| PANTHER | 41 | 256 | 216 | 3.2E-84 | – | |
| PANTHER | 41 | 256 | 216 | 3.2E-84 | ||
| MobiDBLite | 172 | 201 | 30 | - | – | |
| MobiDBLite | 175 | 201 | 27 | - | – | |
| Gene3D | 184 | 256 | 73 | 2.9E-12 | ||
| Pfam | 208 | 249 | 42 | 9.9E-9 | – | |
| ProSiteProfiles | 210 | 245 | 36 | 8.949 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0085300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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